BAC Information

Click to search

BAC

Clone NameB6Ng01-002H18
Chromosome11 (Build37)
Map Location 73,637,513 - 73,741,360
singlet/doubletdoublet
Overlap geneOlfr393, Olfr394, Olfr395
Upstream geneZzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392
Downstream geneOlfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002H18.bB6Ng01-002H18.g
ACCDH840494DH840495
length1,193852
definitionDH840494|Mus musculus domesticus DNA, BAC clone: B6Ng01-002H18, 5' end.DH840495|Mus musculus domesticus DNA, BAC clone: B6Ng01-002H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,740,151 - 73,741,360)(73,637,513 - 73,638,335)
sequence
gaattctttggtttcttatatgtgttttaatattttatcctttaaattct
cctcttatctgagatacaatatacgttgactttctcttatttctgagttg
gttatgtggcctcagtgattatgattttgttcacttctgcaagtttcttg
catttcaaagttctttaggccttattgaagattgtcttattttatgatta
taaatcttcagcaatgagaaattcatgtaatggctcacataaaaacttaa
gactcaggttggatttctatcttatcctcagaactctgatttctaaggat
gaatgaattttctctagaatgtgctgcagaccttgtaaacacagcagatt
ccaaacaaaactcccatattcagatccttcctctgctatcccatcattct
tcactcttccatatcattcaaagtaatctgtgatcaaagatgaaatctga
tagttttatttcattcattcatttctttcactattatactccattaataa
atgctatagatactgaagttcatattttatttatcctaattgttactaag
aaattattatcccacttgaactattgtatccacatctcaatttactctga
ttctgaacccccatacattcttaaaagagctttgttttgctctttacaca
taaagtgaaaaatcaaatcatttttcttttctaatcgattgtttgttgga
ttatcagtgcttggatgataaaatataaatttctttcagggacactcttc
acactgatgtccctaagtttcccttcctctgcagtcacatttagtcatac
aaatactctgtattatattctccagctatgctggatttagggtatatttt
acagtgtctgtgcctttcctgatatttcatctgcctgacagtttcttcta
tttgttccaactctctggattgacatttatccttcagtatctctggcttt
gtaagatagtctcccaagtctgtctagagtagtgagaactactagctttt
ctcactgtgtctgctactcatcctatagtaccgaatgcttcagtctgact
caacagattgagattcaatctgaaaagcatgctgcttcttttagctgcgt
attgactgcatttgcccagtcaactgtgatattattatctgcaattccaa
taaaatgcgatcatttttaagacttatgtctatgaaatataca
gaattcttgtcacactctgcaccagaaatgttatcttctctgttagatga
gaagcaaacttctcacaaactatgtctgagttttcagtagatattttcct
tgatttagtgtttgcagataactatgaagcataaaatttgtaaatgaaga
aaattaagcatttaaagagcgagatgtaaggggtcagactttctgcaagt
ctttatgttttcttggtcacaattaatctataatggattttattgagctc
aaaaggttttattgaagtcaggatatttcagaaatccaaaggaggaatac
catgtctgcatgtaagtgtgcataaaagcccaccagcaatggtgtgttct
ttttccacatccttgccagcatctgctgttgcctgggttttctattttag
ccattctgactagtgtgaggtggaatctgagttgttttgatttttatttc
cctggtgactaagaatgttcaatattttttagttgcttctcagccattca
agatttgtcctttgaaaattctttgtttagctctgtactctattttaatg
gggttatttggttcactggagtctaatttcttgagggtattttttgtata
ttttgaatattagccctttattggatgtagatttggttggtagatatctt
ttccagcctgttgatttccattttgtcctataggcagtgcactttgcctt
acagaagattttcaattttatgaggtcacattcgtcaattgttgatctta
gagattgagccattggtgttctgtccaggaaaatttcccctgtcctgaca
tgttcccaggttctttcacactttttcttctattagattcatgtatctgg
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_73740151_73741360
seq2: B6Ng01-002H18.b_47_1239 (reverse)

seq1  TGTA-ATTTCATAGAGCATTAAAGTCTTTTAAAAAATGACTGCATTTTTT  49
      |||| |||||||||| |||  |||||||   ||||||||  |||  ||||
seq2  TGTATATTTCATAGA-CAT--AAGTCTT---AAAAATGATCGCA--TTTT  42

seq1  ATTGGAAAATGCAGATAATAATATTAATGTTGTATTGGGTAAATGCAGTC  99
      ||||| || ||||||||||||||| |  |||| | |||| ||||||||||
seq2  ATTGG-AATTGCAGATAATAATATCACAGTTG-ACTGGGCAAATGCAGTC  90

seq1  AATAAGCAGGTAAAGAGCAG--GCATGCCTTTCCAGAATGGAATCTACAA  147
      |||| |||| |||| || ||  ||||| |||| ||| || |||||| |||
seq2  AATACGCAGCTAAA-AGAAGCAGCATG-CTTTTCAG-ATTGAATCT-CAA  136

seq1  TCTGTTGGAGTCAGACTGAAGCATTGGGTACTATAGGATGAGTACCAGAC  197
      |||||| |||||||||||||||||| |||||||||||||||||| |||||
seq2  TCTGTT-GAGTCAGACTGAAGCATTCGGTACTATAGGATGAGTAGCAGAC  185

seq1  ACAGTGAGGAAAAGCTAGTAGTTCTCACCTACTCTAGACAGACTTGGGAG  247
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  ACAGTGA-GAAAAGCTAGTAGTTCTCA-CTACTCTAGACAGACTTGGGAG  233

seq1  ACTTATCTTACAAAGCCAGAGATACTGAAGGATAAATGTCAATCCAGGAG  297
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AC-TATCTTACAAAGCCAGAGATACTGAAGGATAAATGTCAATCCA-GAG  281

seq1  AGTTGGAACAAATAGAAGAAACTGTCAGGCAGATGGAATATCAGGAAAGG  347
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTTGGAACAAATAGAAGAAACTGTCAGGCAGATGAAATATCAGGAAAGG  331

seq1  CACAGAACACAGTAAAATATACCCTAAATCCAGCATAGCTGGAGAATATA  397
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  CACAG-ACACTGTAAAATATACCCTAAATCCAGCATAGCTGGAGAATATA  380

seq1  ATACAGAGTATTTGTATGACTAAATGTGACTGCAGAGGAAGGGAAACTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGTATTTGTATGACTAAATGTGACTGCAGAGGAAGGGAAACTTA  430

seq1  GGGACATCAGTGTGAAGAGTGTCCCTGAAAGAAATTTATATTTTATCATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATCAGTGTGAAGAGTGTCCCTGAAAGAAATTTATATTTTATCATC  480

seq1  CAAGCACTGATAATCCAACAAACAATCGATTAGAAAAGAAAAATGATTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTGATAATCCAACAAACAATCGATTAGAAAAGAAAAATGATTTG  530

seq1  ATTTTTCACTTTATGTGTAAAGAGCAAAACAAAGCTCTTTTAAGAATGTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCACTTTATGTGTAAAGAGCAAAACAAAGCTCTTTTAAGAATGTA  580

seq1  TGGGGGTTCAGAATCAGAGTAAATTGAGATGTGGATACAATAGTTCAAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTTCAGAATCAGAGTAAATTGAGATGTGGATACAATAGTTCAAGT  630

seq1  GGGATAATAATTTCTTAGTAACAATTAGGATAAATAAAATATGAACTTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAATAATTTCTTAGTAACAATTAGGATAAATAAAATATGAACTTCA  680

seq1  GTATCTATAGCATTTATTAATGGAGTATAATAGTGAAAGAAATGAATGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTATAGCATTTATTAATGGAGTATAATAGTGAAAGAAATGAATGAA  730

seq1  TGAAATAAAACTATCAGATTTCATCTTTGATCACAGATTACTTTGAATGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAAAACTATCAGATTTCATCTTTGATCACAGATTACTTTGAATGA  780

seq1  TATGGAAGAGTGAAGAATGATGGGATAGCAGAGGAAGGATCTGAATATGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGAGTGAAGAATGATGGGATAGCAGAGGAAGGATCTGAATATGG  830

seq1  GAGTTTTGTTTGGAATCTGCTGTGTTTACAAGGTCTGCAGCACATTCTAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTGTTTGGAATCTGCTGTGTTTACAAGGTCTGCAGCACATTCTAG  880

seq1  AGAAAATTCATTCATCCTTAGAAATCAGAGTTCTGAGGATAAGATAGAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTCATTCATCCTTAGAAATCAGAGTTCTGAGGATAAGATAGAAA  930

seq1  TCCAACCTGAGTCTTAAGTTTTTATGTAAGCCATTACATGAATTTCTCAT  997
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCCAACCTGAGTCTTAAGTTTTTATGTGAGCCATTACATGAATTTCTCAT  980

seq1  TGCTGAAGATTTATAATCATAAAATAAGACAATCTTCAATAAGGCCTAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAGATTTATAATCATAAAATAAGACAATCTTCAATAAGGCCTAAA  1030

seq1  GAACTTTGAAATGCAAGAAACTTGCAGAAGTGAACAAAATCATAATCACT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTGAAATGCAAGAAACTTGCAGAAGTGAACAAAATCATAATCACT  1080

seq1  GAGGCCACATAACCAACTCAGAAATAAGAGAAAGTCAACGTATATTGTAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCACATAACCAACTCAGAAATAAGAGAAAGTCAACGTATATTGTAT  1130

seq1  CTCAGATAAGAGGAGAATTTAAAGGATAAAATATTAAAACACATATAAGA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATAAGAGGAGAATTTAAAGGATAAAATATTAAAACACATATAAGA  1180

seq1  AACCAAAGAATTC  1210
      |||||||||||||
seq2  AACCAAAGAATTC  1193

seq1: chr11_73637513_73638335
seq2: B6Ng01-002H18.g_68_891

seq1  GAATTCTTGTCACACTCTGCACCAGAAATGTTATCTTCTCTGTTAGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCACACTCTGCACCAGAAATGTTATCTTCTCTGTTAGATGA  50

seq1  GAAGCAAACTTCTCACAAACTATGTCTGAGTTTTCAGTAGATATTTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAACTTCTCACAAACTATGTCTGAGTTTTCAGTAGATATTTTCCT  100

seq1  TGATTTAGTGTTTGCAGATAACTATGAAGCATAAAATTTGTAAATGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAGTGTTTGCAGATAACTATGAAGCATAAAATTTGTAAATGAAGA  150

seq1  AAATTAAGCATTTAAAGAGCGAGATGTAAGGGGTCAGACTTTCTGCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGCATTTAAAGAGCGAGATGTAAGGGGTCAGACTTTCTGCAAGT  200

seq1  CTTTATGTTTTCTTGGTCACAATTAATCTATAATGGATTTTATTGAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTTTTCTTGGTCACAATTAATCTATAATGGATTTTATTGAGCTC  250

seq1  AAAAGGTTTTATTGAAGTCAGGATATTTCAGAAATCCAAAGGAGGAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTTTATTGAAGTCAGGATATTTCAGAAATCCAAAGGAGGAATAC  300

seq1  CATGTCTGCATGTAAGTGTGCATAAAAGCCCACCAGCAATGGTGTGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGCATGTAAGTGTGCATAAAAGCCCACCAGCAATGGTGTGTTCT  350

seq1  TTTTCCACATCCTTGCCAGCATCTGCTGTTGCCTGGGTTTTCTATTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACATCCTTGCCAGCATCTGCTGTTGCCTGGGTTTTCTATTTTAG  400

seq1  CCATTCTGACTAGTGTGAGGTGGAATCTGAGTTGTTTTGATTTTTATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGACTAGTGTGAGGTGGAATCTGAGTTGTTTTGATTTTTATTTC  450

seq1  CCTGGTGACTAAGAATGTTCAATATTTTTTAGTTGCTTCTCAGCCATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGACTAAGAATGTTCAATATTTTTTAGTTGCTTCTCAGCCATTCA  500

seq1  AGATTTGTCCTTTGAAAATTCTTTGTTTAGCTCTGTACTCTATTTTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTCCTTTGAAAATTCTTTGTTTAGCTCTGTACTCTATTTTAATG  550

seq1  GGGTTATTTGGTTCACTGGAGTCTAATTTCTTGAGGGTATTTTTTGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATTTGGTTCACTGGAGTCTAATTTCTTGAGGGTATTTTTTGTATA  600

seq1  TTTTAAATATTAGCCCTTTATTGGATGTAGATTTGGTTGGTAGATATCTT  650
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATATTAGCCCTTTATTGGATGTAGATTTGGTTGGTAGATATCTT  650

seq1  TTCCAGCCTGTTGATTTCCATTTTGTCCTATTGGCAGTGCACTTTGCCTT  700
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCCAGCCTGTTGATTTCCATTTTGTCCTATAGGCAGTGCACTTTGCCTT  700

seq1  ACAGAAGATTTTCAATTTTATGAGGTCACATTTGTCAATTGTTGATCTTA  750
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACAGAAGATTTTCAATTTTATGAGGTCACATTCGTCAATTGTTGATCTTA  750

seq1  GAGATTGAGCCATTGGTGTTCTGTCCAGGAAAATTTCCCCTGTCCTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGAGCCATTGGTGTTCTGTCCAGGAAAATTTCCCCTGTCCTGACA  800

seq1  TGTT-CCAGGTTCTTTCCCACTTT  823
      |||| |||||||||||| ||||||
seq2  TGTTCCCAGGTTCTTTCACACTTT  824