BAC Information

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BAC

Clone NameB6Ng01-002K12
Chromosome11 (Build37)
Map Location 47,833,978 - 47,999,689
singlet/doubletdoublet
Overlap genenone
Upstream geneSgcd, LOC628753, LOC100039647
Downstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002K12.bB6Ng01-002K12.g
ACCDH840616DH840617
length1,102596
definitionDH840616|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K12, 5' end.DH840617|Mus musculus domesticus DNA, BAC clone: B6Ng01-002K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,998,576 - 47,999,689)(47,833,978 - 47,834,573)
sequence
gaattcaaggtttttgtatcctgaaatgttctttttaggtgaaactgtat
ttagaggaagcctgaagtatatcagacacacaaacaaatgagaaactgtg
gttaagtgagaagggttaatattctctgtctacaatagaatgtgcactgg
tttagaagcccatggtgtaggtcactgggcataatcatgcagatacaggt
tgaacactctctggacactgaacaagctacatcctggggttgaagaacaa
aatgtatgtggtttttttctaacattcctgatagggcctcttgtttatag
acagggaaacgaaggtaaagagaagaaaagtagttgactacccaggctat
gccagatgtggcttcacttactgtccaatggcatgatgtcctaacaaaac
aaagagctttcagaaaacaaaacaaaacaaaacaaaacaaaacctcaaat
ctcatcccacagtcctgaaagggaactttaaaatgaccaggaatggtgaa
actggcaacgggaactgaattcacttaaagtgtcataagaggaaatgtga
tctagccataatgttttgtacctatgtctcccatgatgacagcagttcac
gttttagatatgtcttgatttcaagctctaaaagtttcagttgttttaat
caattgaacatttatagaatactttgaatcaaatattgaaacaaagcccc
aaacagaaacaatcttcagtcttaatgcctgagctctgttaagctcataa
ttctgtttcaacgggtgctttgcagtgagtcactgagcaggccattctga
gggcatttctaatatcctttaattaaaactcacaagagtttgtttgataa
aataccaaggaaaccaattattcccaggtatttctctgccaagaagcctt
gcacagtgataatgcagttctgtccctgagtgccacctgaagtgatattt
gcattcaaccccactgtcttcctgagttccctaagcaagccagggacatg
gcttctgtgagttgttattgggttatcttcagtgtcacatgatgtctagg
gtcagtgatgctgtgagctgactgtatatcccctcaggaattaaaacagt
ga
gaattctctgtaggggagcagtctcaggtggcagtcatcttgaagcaaga
agctctggtgatagtttttgtgcacactggttttagcttatggtcaactc
tttaacaatatatctattcagaacaggggaaggagtttctcctttactga
gtctgaactgggaaagatcttgtcattcacatgggtctgaggcatcagag
tccttgaaatgcttatactaatgtcactaatacacactcactcaaactgt
ccttggctcccaaaaaataaaactgcaaagctcgggaatgaaaggcaaaa
aactgaaaatggattaaatgaaatttaaaagatctgtagagcaagaaaaa
cacttaacagacagaagagccagcctctagaatgtgagaaaaatctttgc
tatgtctttcttggacatgaaatatgtatctaaaataagaactcagaaaa
attaaaacaacactcaagataaataccaagtgaaaaattgggaaaggtga
tgagcagatacttttaaaaagagaaaggaaggaaggaaggaaggaaggaa
ggaaggaaggaaggaaggaaggaaggaaagaagggagtgagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_47998576_47999689
seq2: B6Ng01-002K12.b_47_1148 (reverse)

seq1  TCACTGTATAAATT-CTGAGGGGATATAACAGTCAGCTCACAGCATCCAC  49
      ||||||| | |||| |||||||||||| |||||||||||||||||| |||
seq2  TCACTGTTTTAATTCCTGAGGGGATAT-ACAGTCAGCTCACAGCAT-CAC  48

seq1  TGACCCTAGACATCATTGTGACAACTGGAAGATAACCCAAATAAACAACT  99
      ||||||||||||||| |||||| ||| |||||||||||||   |||||||
seq2  TGACCCTAGACATCA-TGTGAC-ACT-GAAGATAACCCAA--TAACAACT  93

seq1  CACAGAAGCCATTGTCCCTGGCTTTGCCTTAGGGGAACTCAGGAAAGACA  149
      ||||||||||| ||||||||||||   |||| ||||||||||| ||||||
seq2  CACAGAAGCCA-TGTCCCTGGCTT--GCTTA-GGGAACTCAGG-AAGACA  138

seq1  GTGGGGGTTGAATGCAAATATCACTTCAGGTGGCACTCAGGGACAGAACT  199
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GT-GGGGTTGAATGCAAATATCACTTCAGGTGGCACTCAGGGACAGAACT  187

seq1  GCATTATCACTGTGCAAGGCTTCTTGGCAGAGAAATACCTTGGAATAATT  249
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCATTATCACTGTGCAAGGCTTCTTGGCAGAGAAATACCTGGGAATAATT  237

seq1  GGTTTCCTTGGTATTTTATCAAACAAACTCTTGTGAGTTTTAATTAAAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTTGGTATTTTATCAAACAAACTCTTGTGAGTTTTAATTAAAGG  287

seq1  ATATTAGAAATGCCCTCAGAATGGCCTGCTCAGTGACTCACTGCAAAGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAAATGCCCTCAGAATGGCCTGCTCAGTGACTCACTGCAAAGCA  337

seq1  CCCGTTGAAACAGAATTATGAGCTTAACAGAGCTCAGGCATTAAGACTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTGAAACAGAATTATGAGCTTAACAGAGCTCAGGCATTAAGACTGA  387

seq1  AGATTGTTTCTGTTTGGGGCTTTGTTTCAATATTTGATTCAAAGTATTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTTCTGTTTGGGGCTTTGTTTCAATATTTGATTCAAAGTATTCT  437

seq1  ATAAATGTTCAATTGATTAAAACAACTGAAACTTTTAGAGCTTGAAATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTTCAATTGATTAAAACAACTGAAACTTTTAGAGCTTGAAATCA  487

seq1  AGACATATCTAAAACGTGAACTGCTGTCATCATGGGAGACATAGGTACAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATATCTAAAACGTGAACTGCTGTCATCATGGGAGACATAGGTACAA  537

seq1  AACATTATGGCTAGATCACATTTCCTCTTATGACACTTTAAGTGAATTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATGGCTAGATCACATTTCCTCTTATGACACTTTAAGTGAATTCA  587

seq1  GTTCCCGTTGCCAGTTTCACCATTCCTGGTCATTTTAAAGTTCCCTTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCGTTGCCAGTTTCACCATTCCTGGTCATTTTAAAGTTCCCTTTCA  637

seq1  GGACTGTGGGATGAGATTTGAGGTTTTGTTTTGTTTTGTTTTGTTTTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTGGGATGAGATTTGAGGTTTTGTTTTGTTTTGTTTTGTTTTGTT  687

seq1  TTCTGAAAGCTCTTTGTTTTGTTAGGACATCATGCCATTGGACAGTAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAGCTCTTTGTTTTGTTAGGACATCATGCCATTGGACAGTAAGT  737

seq1  GAAGCCACATCTGGCATAGCCTGGGTAGTCAACTACTTTTCTTCTCTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCACATCTGGCATAGCCTGGGTAGTCAACTACTTTTCTTCTCTTTA  787

seq1  CCTTCGTTTCCCTGTCTATAAACAAGAGGCCCTATCAGGAATGTTAGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGTTTCCCTGTCTATAAACAAGAGGCCCTATCAGGAATGTTAGAAA  837

seq1  AAAACCACATACATTTTGTTCTTCAACCCCAGGATGTAGCTTGTTCAGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACATACATTTTGTTCTTCAACCCCAGGATGTAGCTTGTTCAGTG  887

seq1  TCCAGAGAGTGTTCAACCTGTATCTGCATGATTATGCCCAGTGACCTACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGAGTGTTCAACCTGTATCTGCATGATTATGCCCAGTGACCTACA  937

seq1  CCATGGGCTTCTAAACCAGTGCACATTCTATTGTAGACAGAGAATATTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGCTTCTAAACCAGTGCACATTCTATTGTAGACAGAGAATATTAA  987

seq1  CCCTTCTCACTTAACCACAGTTTCTCATTTGTTTGTGTGTCTGATATACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCACTTAACCACAGTTTCTCATTTGTTTGTGTGTCTGATATACT  1037

seq1  TCAGGCTTCCTCTAAATACAGTTTCACCTAAAAAGAACATTTCAGGATAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTTCCTCTAAATACAGTTTCACCTAAAAAGAACATTTCAGGATAC  1087

seq1  AAAAACCTTGAATTC  1114
      |||||||||||||||
seq2  AAAAACCTTGAATTC  1102

seq1: chr11_47833978_47834573
seq2: B6Ng01-002K12.g_68_663

seq1  GAATTCTCTGTAGGGGAGCAGTCTCAGGTGGCAGTCATCTTGAAGCAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTAGGGGAGCAGTCTCAGGTGGCAGTCATCTTGAAGCAAGA  50

seq1  AGCTCTGGTGATAGTTTTTGTGCACACTGGTTTTAGCTTATGGTCAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGTGATAGTTTTTGTGCACACTGGTTTTAGCTTATGGTCAACTC  100

seq1  TTTAACAATATATCTATTCAGAACAGGGGAAGGAGTTTCTCCTTTACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAATATATCTATTCAGAACAGGGGAAGGAGTTTCTCCTTTACTGA  150

seq1  GTCTGAACTGGGAAAGATCTTGTCATTCACATGGGTCTGAGGCATCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAACTGGGAAAGATCTTGTCATTCACATGGGTCTGAGGCATCAGAG  200

seq1  TCCTTGAAATGCTTATACTAATGTCACTAATACACACTCACTCAAACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAAATGCTTATACTAATGTCACTAATACACACTCACTCAAACTGT  250

seq1  CCTTGGCTCCCAAAAAATAAAACTGCAAAGCTCGGGAATGAAAGGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCTCCCAAAAAATAAAACTGCAAAGCTCGGGAATGAAAGGCAAAA  300

seq1  AACTGAAAATGGATTAAATGAAATTTAAAAGATCTGTAGAGCAAGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAATGGATTAAATGAAATTTAAAAGATCTGTAGAGCAAGAAAAA  350

seq1  CACTTAACAGACAGAAGAGCCAGCCTCTAGAATGTGAGAAAAATCTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAACAGACAGAAGAGCCAGCCTCTAGAATGTGAGAAAAATCTTTGC  400

seq1  TATGTCTTTCTTGGACATGAAATATGTATCTAAAATAAGAACTCAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTTTCTTGGACATGAAATATGTATCTAAAATAAGAACTCAGAAAA  450

seq1  ATTAAAACAACACTCAAGATAAATACCAAGTGAAAAATTGGGAAAGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACAACACTCAAGATAAATACCAAGTGAAAAATTGGGAAAGGTGA  500

seq1  TGAGCAGATACTTTTAAAAAGAGAAAGGAAGGAAGGAAGGAAGGAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGATACTTTTAAAAAGAGAAAGGAAGGAAGGAAGGAAGGAAGGAA  550

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAGGGAGTGAGGGAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAGGGAGTGAGGGAGG  596