BAC Information

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BAC

Clone NameB6Ng01-002M12
Chromosome11 (Build37)
Map Location 106,112,855 - 106,235,734
singlet/doubletdoublet
Overlap geneFtsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a
Upstream geneTlk2, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42
Downstream gene2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002M12.bB6Ng01-002M12.g
ACCDH840700DH840701
length1,1571,093
definitionDH840700|Mus musculus domesticus DNA, BAC clone: B6Ng01-002M12, 5' end.DH840701|Mus musculus domesticus DNA, BAC clone: B6Ng01-002M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,112,855 - 106,114,024)(106,234,637 - 106,235,734)
sequence
gaattcacatttgtgtaatttgatcccaaataaaggagcactcaacaggc
atcaaactgcatctgttgattttgactactattagaaccccaaaacctct
actcctggtggacagagctgctctgtgagtatcacaccattctgggggta
atactcaaccatttttttaaacctctccatatggtatggtgtattcttat
ttaacaagtggggaaaacagacttaagttacacaataaaaggggagttgg
cactaaaccgttcctgctctattgcctctcctgtgtcataaaggtgacca
ggccattgcaccacaaaagctcattttgctgtgagattgctttgaaaggc
ttattcttcagcagcccaaatcacagtgctcattaaacccagtgagtcaa
ttgtgcccccttggtaacacaggcattacaacttcatctcctgtcatgtg
aactcttggtcttaactctagtttatagagcttcctgatgtcatcatatt
agaggtgtttcatttgagcattctggagtctcgggtactccttttctcct
ctagtatttataggtaaacacaacaaccaaaccccacgatcactcaatat
atttaactcgatgcttcccccgacctctgagccctcaaaccgatggccca
gctctcccttacctgctggccacggatggttcgcagggagaacatgcctg
tctccccctcatctgcaatagaaaccccaggcagatccatcttcagctcg
acacgctcccgctgcttcctctgctcacgaagcaacttcttcttcttcct
gatcagatgttgagggattaacctgcttgtctccaaaacttgagtgtcct
ttaccctttttatatactcctcctcagacccctcacctcttgagttctgc
cacttcttgggctttcatctctgccagagtccgattaagctgttcttcct
ctctctcttcttcttcctctggcgctgctttgtctcagctactgcctctt
cttcatcactcttcttcttcttctgagctgagctggcaaccagtcgaaag
gtttgttttattttcccagacacttgatcccacacccacctcctaacctt
gctactccctctactgagttcaatgccttgccttggctctttcagctcct
agccaca
gaattcctggcggaggtgaaccactcactgccctctcagagatgggcagt
tcagtaccggagtccacaacaccgtcttctgtttccaaggcatgcattct
tccgacaggaagttagtgaagtgtctattgcgtaaagacaggtgagggga
gagatctatttccacagctgtgacatccgaagataggccccgtgcagcag
tcgagcacagtcccaacaggaagctgggattagcacccgagactcaccct
tcccccatcctccactcctgtccccctttccatagtcctggagtggagag
ccaggaagaacatccccgtctcctctttgtccctgtctgtcagtgactgc
tgctgcattttactacggccagagccttcgctctctcagccctagccagt
catcttcaataaggcaattaaaaagataaactaatagtaaaaatgtggga
aaaggagagtcttccatgtggccacattaggaaggaggacaaagagatcc
agtgataaccccgtccccaccccccagggcatcctcagggtcttggcact
agggttaggtggaaagaacagccaagcaacccaagagggaaatcactgta
cccgggaaattagcaaaaagggaggtcactcccaacagagcagagctctc
agccttcaaaacgctgcgacctttaacacagctcctcaaggtgtggtgac
ccccaaccgtaagaattttgctactgttatgaattatggtgtaatatccg
atatgcaggatatctgctatgtgactcctgtgaaagggtcatttaacccc
caaaggaatcaccacccacaggttgggaactgctgtgataaaggctgaga
ttccaagatagggaatgtaggtattatcctgagagtaattggggcttatg
ggcaggggccagcagagagaacgggtgacatgcacagccaaaactagaat
tattttgttctcgtgtcttactccaatcctatggataaacacacatgcgc
gggcgcgcgtgcgcgcgcgcacaccaccacacacacaccaccacgtacca
caaacatacaccatacaatatatacacaaaccaccccatacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106112855_106114024
seq2: B6Ng01-002M12.b_49_1205

seq1  GAATTCACATTTGTGTAATTTGATCCCAAATAAAGGAGCACTCAACAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTGTGTAATTTGATCCCAAATAAAGGAGCACTCAACAGGC  50

seq1  ATCAAACTGCATCTGTTGATTTTGACTACTATTAGAACCCCAAAACCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTGCATCTGTTGATTTTGACTACTATTAGAACCCCAAAACCTCT  100

seq1  ACTCCTGGTGGACAGAGCTGCTCTGTGAGTATCACACCATTCTGGGGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGGTGGACAGAGCTGCTCTGTGAGTATCACACCATTCTGGGGGTA  150

seq1  ATACTCAACCATTTTTTTAAACCTCTCCATATGGTATGGTGTATTCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAACCATTTTTTTAAACCTCTCCATATGGTATGGTGTATTCTTAT  200

seq1  TTAACAAGTGGGGAAAACAGACTTAAGTTACACAATAAAAGGGGAGTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAGTGGGGAAAACAGACTTAAGTTACACAATAAAAGGGGAGTTGG  250

seq1  CACTAAACCGTTCCTGCTCTATTGCCTCTCCTGTGTCATAAAGGTGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAACCGTTCCTGCTCTATTGCCTCTCCTGTGTCATAAAGGTGACCA  300

seq1  GGCCATTGCACCACAAAAGCTCATTTTGCTGTGAGATTGCTTTGAAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTGCACCACAAAAGCTCATTTTGCTGTGAGATTGCTTTGAAAGGC  350

seq1  TTATTCTTCAGCAGCCCAAATCACAGTGCTCATTAAACCCAGTGAGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTCAGCAGCCCAAATCACAGTGCTCATTAAACCCAGTGAGTCAA  400

seq1  TTGTGCCCCCTTGGTAACACAGGCATTACAACTTCATCTCCTGTCATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCCCCTTGGTAACACAGGCATTACAACTTCATCTCCTGTCATGTG  450

seq1  AACTCTTGGTCTTAACTCTAGTTTATAGAGCTTCCTGATGTCATCATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTGGTCTTAACTCTAGTTTATAGAGCTTCCTGATGTCATCATATT  500

seq1  AGAGGTGTTTCATTTGAGCATTCTGGAGTCTCGGGTACTCCTTTTCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGTTTCATTTGAGCATTCTGGAGTCTCGGGTACTCCTTTTCTCCT  550

seq1  CTAGTATTTATAGGTAAACACAACAACCAAACCCCACGATCACTCAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATTTATAGGTAAACACAACAACCAAACCCCACGATCACTCAATAT  600

seq1  ATTTAACTCGATGCTTCCCCCGACCTCTGAGCCCTCAAACCGATGGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTCGATGCTTCCCCCGACCTCTGAGCCCTCAAACCGATGGCCCA  650

seq1  GCTCTCCCTTACCTGCTGGCCACGGATGGTTCGCAGGGAGAACATGCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCTTACCTGCTGGCCACGGATGGTTCGCAGGGAGAACATGCCTG  700

seq1  TCTCCCCCTCATCTGCAATAGAAACCCCAGGCAGATCCATCTTCAGCTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCTCATCTGCAATAGAAACCCCAGGCAGATCCATCTTCAGCTCG  750

seq1  ACACGCTCCCGCTGCTTCCTCTGCTCACGAAGCAACTTCTTCTTCTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCTCCCGCTGCTTCCTCTGCTCACGAAGCAACTTCTTCTTCTTCCT  800

seq1  GATCAGATGTTGAGGGATTTAACCTGCTTGTCTCCAAAACTTGAGTGTCC  850
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATCAGATGTTGAGGGA-TTAACCTGCTTGTCTCCAAAACTTGAGTGTCC  849

seq1  TTTACCCTTTTCATATACTCCTCCTCAGACCCCTCACCTCTTGAGTTCTG  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCTTTTTATATACTCCTCCTCAGACCCCTCACCTCTTGAGTTCTG  899

seq1  CCACTTCTTGGGCTTTCATCTCTGCCAGAGTCCGATTAAGCTGTTCTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTTGGGCTTTCATCTCTGCCAGAGTCCGATTAAGCTGTTCTTCC  949

seq1  TCTCTCTCTTCTTCTTCCTCTGGCGCCTGCTTTGTCTCAGCTACTGCCTC  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTCTCTCTTCTTCTTCCTCTGGCG-CTGCTTTGTCTCAGCTACTGCCTC  998

seq1  TTCTTCATCACCTTCTTCTTCTTCTTCTGAGCTGAGGCTGGCAAACCAGT  1050
      |||||||||||  |||||||||||||||||||||| |||||| |||||||
seq2  TTCTTCATCAC--TCTTCTTCTTCTTCTGAGCTGA-GCTGGC-AACCAGT  1044

seq1  CGAAAGGTGTG-TTTATTTTCCCAGACACTTGATCCCACACCCAACCCTC  1099
      |||||||| || ||||||||||||||||||||||||||||||||  ||| 
seq2  CGAAAGGTTTGTTTTATTTTCCCAGACACTTGATCCCACACCCA--CCT-  1091

seq1  CCTAACCCTGGCTACCTCCTCCTTACCTGATGTCCAATGCCTTTGCTT-G  1148
      ||||| ||| |||||  ||||  || |||| || |||||||||  ||| |
seq2  CCTAA-CCTTGCTACTCCCTC--TA-CTGA-GTTCAATGCCTTGCCTTGG  1136

seq1  CTCTTTCAGCTTCTTAGCCACA  1170
      |||||||||| || ||||||||
seq2  CTCTTTCAGC-TCCTAGCCACA  1157

seq1: chr11_106234637_106235734
seq2: B6Ng01-002M12.g_66_1158 (reverse)

seq1  GTGTATGTGTGTGTTTGTGTATATATATGTATGTGTGTATGTTTGTGTGT  50
      ||||||| |   |||||||||||||| |||||| ||||||||||||| ||
seq2  GTGTATGGGGTGGTTTGTGTATATAT-TGTATG-GTGTATGTTTGTG-GT  47

seq1  ACGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACGCGCGCGCGC  100
      ||||| ||| |||||||||||   |||||||||||||||||||||| |||
seq2  ACGTG-GTG-GTGTGTGTGTGGTGGTGTGCGCGCGCGCACGCGCGCCCGC  95

seq1  GCATGTGTGTTTATCCATAGGATTGGAGTAAGACACGAGGAACAAAATAA  150
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCATGTGTGTTTATCCATAGGATTGGAGTAAGACACGA-GAACAAAATAA  144

seq1  TTCTAGTTTTGGCTGTGCATGTCACCCGTTCTCTCCTGCTGGCCCCTGCC  200
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCTAGTTTTGGCTGTGCATGTCACCCGTTCTCT-CTGCTGGCCCCTGCC  193

seq1  CAT-AGCCCC-ATTACTCTCAGGATAATACCTACATTCCCTATCTTGGAA  248
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCCCCAATTACTCTCAGGATAATACCTACATTCCCTATCTTGGAA  243

seq1  TCTCAGCCTTTATCACAGCAGTTCCCAACCTGTGGGTGGTGATTCCTTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCTTTATCACAGCAGTTCCCAACCTGTGGGTGGTGATTCCTTTG  293

seq1  GGGGTTAAATGACCCTTTCACAGGAGTCACATAGCAGATATCCTGCATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTAAATGACCCTTTCACAGGAGTCACATAGCAGATATCCTGCATAT  343

seq1  CGGATATTACACCATAATTCATAACAGTAGCAAAATTCTTACGGTTGGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATATTACACCATAATTCATAACAGTAGCAAAATTCTTACGGTTGGGG  393

seq1  GTCACCACACCTTGAGGAGCTGTGTTAAAGGTCGCAGCGTTTTGAAGGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCACACCTTGAGGAGCTGTGTTAAAGGTCGCAGCGTTTTGAAGGCT  443

seq1  GAGAGCTCTGCTCTGTTGGGAGTGACCTCCCTTTTTGCTAATTTCCCGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTCTGCTCTGTTGGGAGTGACCTCCCTTTTTGCTAATTTCCCGGG  493

seq1  TACAGTGATTTCCCTCTTGGGTTGCTTGGCTGTTCTTTCCACCTAACCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGATTTCCCTCTTGGGTTGCTTGGCTGTTCTTTCCACCTAACCCT  543

seq1  AGTGCCAAGACCCTGAGGATGCCCTGGGGGGTGGGGACGGGGTTATCACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAAGACCCTGAGGATGCCCTGGGGGGTGGGGACGGGGTTATCACT  593

seq1  GGATCTCTTTGTCCTCCTTCCTAATGTGGCCACATGGAAGACTCTCCTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCTTTGTCCTCCTTCCTAATGTGGCCACATGGAAGACTCTCCTTT  643

seq1  TCCCACATTTTTACTATTAGTTTATCTTTTTAATTGCCTTATTGAAGATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATTTTTACTATTAGTTTATCTTTTTAATTGCCTTATTGAAGATG  693

seq1  ACTGGCTAGGGCTGAGAGAGCGAAGGCTCTGGCCGTAGTAAAATGCAGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTAGGGCTGAGAGAGCGAAGGCTCTGGCCGTAGTAAAATGCAGCA  743

seq1  GCAGTCACTGACAGACAGGGACAAAGAGGAGACGGGGATGTTCTTCCTGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCACTGACAGACAGGGACAAAGAGGAGACGGGGATGTTCTTCCTGG  793

seq1  CTCTCCACTCCAGGACTATGGAAAGGGGGACAGGAGTGGAGGATGGGGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCACTCCAGGACTATGGAAAGGGGGACAGGAGTGGAGGATGGGGGA  843

seq1  AGGGTGAGTCTCGGGTGCTAATCCCAGCTTCCTGTTGGGACTGTGCTCGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGTCTCGGGTGCTAATCCCAGCTTCCTGTTGGGACTGTGCTCGA  893

seq1  CTGCTGCACGGGGCCTATCTTCGGATGTCACAGCTGTGGAAATAGATCTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCACGGGGCCTATCTTCGGATGTCACAGCTGTGGAAATAGATCTC  943

seq1  TCCCCTCACCTGTCTTTACGCAATAGACACTTCACTAACTTCCTGTCGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCACCTGTCTTTACGCAATAGACACTTCACTAACTTCCTGTCGGA  993

seq1  AGAATGCATGCCTTGGAAACAGAAGACGGTGTTGTGGACTCCGGTACTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCATGCCTTGGAAACAGAAGACGGTGTTGTGGACTCCGGTACTGA  1043

seq1  ACTGCCCATCTCTGAGAGGGCAGTGAGTGGTTCACCTCCGCCAGGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCATCTCTGAGAGGGCAGTGAGTGGTTCACCTCCGCCAGGAATTC  1093