BAC Information

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BAC

Clone NameB6Ng01-003G02
Chromosome5 (Build37)11 (Build37)
Map Location 140,594,239 - 140,595,22786,365,218 - 86,365,785
singlet/doubletsingletsinglet
Overlap geneMad1l1
Upstream genePrkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270
Downstream geneFtsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003G02.bB6Ng01-003G02.g
ACCDH841114DH841115
length992950
definitionDH841114|Mus musculus domesticus DNA, BAC clone: B6Ng01-003G02, 5' end.DH841115|Mus musculus domesticus DNA, BAC clone: B6Ng01-003G02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(140,594,239 - 140,595,227)(86,365,218 - 86,365,785)
sequence
gaattccaggggttgacctgtctctgtctcccatctcctatatttttgca
tgagttctgagtactgactcatgtccttatccccgtacaacaagcacttt
actagctgagctaccttcccagcctcaaggatggtgccatcttagcatgc
cactggcttttgttcctaacacactgacattgtcatttgtggtacagctt
ccccatggcgaggaacaagcaacacggtgcttacttcagagaactgtccc
cttgcttccacactctgatgtagtttatgtgctgtggcaggtctcacagc
tttgagaatctgatagaatggcccctgaaactggctgtgctggacagatc
ccagcaaatttcctgttgcatattgttggaggaggtggcaaggctgcagg
gcctgttgcatgctgctatagtaagagaggtgtgtgtgtgtgtgcacacg
ttcacgcatgtaaatgcacatgtagccaaagtgtgggtgtaggtcgagga
caacttgcagaaattggttctatcctcccaccatatgggtcctggagatg
aaactcgggttgtcaggtttgttcagtgcctttacctgctgaaccacctt
gctggcctcatcaaggttttctgtgactcctcagcgggctctctagcctt
gagaggctggctaggcacatgcacacactgatttcaaggaaacatttgct
tctctgtgtacttccatgttccctacagagtggagtacagatgtccttgt
gcacctcagtactgagaggcatatctgcctacttcccgcaatgctttatg
gcttgaattcagatgaggcatgaatagctgatgccctgctgagatgctta
caaatgccaagtggccttggcagccaactgttccaatttcttgattctgc
gtagaactcatcagaaagtctttccccttttactagcagagttagcccat
tttatatcttgcttttctgtttggatagatttctactgcata
gaattcttgggattcagtttgaagtcttgtgttcctcagggagcacttta
cccactgagccatctctcccagccccgttttgagaatgttgtcacatgta
gtttcttaagcctgtatgggaaagcaagagatccagaatagccaggacag
cagtgaggaagattgaagggacagagcggacatctgacagcagggctgag
tggggatgtgcagtgatgcagacagtatgacctcatggaaaggtggaagg
gctcaggaccctcaccagcacagccagctaactctgacagcagtgcaaag
gtggctcggaggaaggagggactttgccacaggtgtcaaatgagaactca
atatccacaggaaagaaacccagcccaggcctctgcctcttaccagcacc
aactccaggaggatcctaaacctgagtgttaaacacaaaacttgaaattt
tctgaggtgacaggaaagaaatctagctgaccttgaatttcatgttgact
ttcaacagccaacataaaaggcgcaatttctggaagaaataattgatatg
ctggacttaattaaaattaaaaattcttttttgctgactatattgccaat
agaataagaagagagatcatagctggatgtagtggtgtacagacctatca
tcccagctagtaggaaggctcaggcaagagtattacaagttcaagggcta
cctgggttacaaagtgtgtttaggtttagtttgagcaacttagtaagatc
ctgtctaaaattaaaacccaagcctttaatcccagcacctgggaggcaga
ggcaggcagatttctgagttcgaggccagcctggtctacaaagtgagttc
caggacagccaggggctatacagagaaaccctgtctcaaaaacaccaaaa
aacaaaacaaacaaacaaaaaaccaaaaagagggctaggaatttagtggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_140594239_140595227
seq2: B6Ng01-003G02.b_48_1038

seq1  GAATTCCAGGGGTTGACCTGTCTCTGTCTCCCATCTCCTATATTTTTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGGTTGACCTGTCTCTGTCTCCCATCTCCTATATTTTTGCA  50

seq1  TGAGTTCTGAGTACTGACTCATGTCCTTATCCCCGTACAACAAGCACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTGAGTACTGACTCATGTCCTTATCCCCGTACAACAAGCACTTT  100

seq1  ACTAGCTGAGCTACCTTCCCAGCCTCAAGGATGGTGCCATCTTAGCATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTGAGCTACCTTCCCAGCCTCAAGGATGGTGCCATCTTAGCATGC  150

seq1  CACTGGCTTTTGTTCCTAACACACTGACATTGTCATTTGTGGTACAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCTTTTGTTCCTAACACACTGACATTGTCATTTGTGGTACAGCTT  200

seq1  CCCCATGGCGAGGAACAAGCAACACGGTGCTTACTTCAGAGAACTGTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGGCGAGGAACAAGCAACACGGTGCTTACTTCAGAGAACTGTCCC  250

seq1  CTTGCTTCCACACTCTGATGTAGTTTATGTGCTGTGGCAGGTCTCACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCCACACTCTGATGTAGTTTATGTGCTGTGGCAGGTCTCACAGC  300

seq1  TTTGAGAATCTGATAGAATGGCCCCTGAAACTGGCTGTGCTGGACAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAATCTGATAGAATGGCCCCTGAAACTGGCTGTGCTGGACAGATC  350

seq1  CCAGCAAATTTCCTGTTGCATATTGTTGGAGGAGGTGGCAAGGCTGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAATTTCCTGTTGCATATTGTTGGAGGAGGTGGCAAGGCTGCAGG  400

seq1  GCCTGTTGCATGCTGCTATAGTAAGAGAGGTGTGTGTGTGTGTGCACACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTGCATGCTGCTATAGTAAGAGAGGTGTGTGTGTGTGTGCACACG  450

seq1  TTCACGCATGTAAATGCACATGTAGCCAAAGTGTGGGTGTAGGTCGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGCATGTAAATGCACATGTAGCCAAAGTGTGGGTGTAGGTCGAGGA  500

seq1  CAACTTGCAGAAATTGGTTCTATCCTCCCACCATATGGGTCCTGGAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGCAGAAATTGGTTCTATCCTCCCACCATATGGGTCCTGGAGATG  550

seq1  AAACTCGGGTTGTCAGGTTTGTTCAGTGCCTTTACCTGCTGAACCACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCGGGTTGTCAGGTTTGTTCAGTGCCTTTACCTGCTGAACCACCTT  600

seq1  GCTGGCCTCATCAAGGTTTTCTGTGACTCCTCAGCGGGCTCTCTAGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTCATCAAGGTTTTCTGTGACTCCTCAGCGGGCTCTCTAGCCTT  650

seq1  GAGAGGCTGGCTAGGCACATGCACACACTGATTTCAAGGAAACATTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCTGGCTAGGCACATGCACACACTGATTTCAAGGAAACATTTGCT  700

seq1  TCTCTGTGTACTTCCATGTTCCCTACAGAGTGGAGTACAGATGTCCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTACTTCCATGTTCCCTACAGAGTGGAGTACAGATGTCCTTGT  750

seq1  GCACCTCAGTACTGAGAGGCATATCTGCCTACTTCCCGCAATGCTTTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCAGTACTGAGAGGCATATCTGCCTACTTCCCGCAATGCTTTATG  800

seq1  GCTTGAATTCAGATGAGGCATGAATAGCTGATG-CCTGCTGAGATGCTTA  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCTTGAATTCAGATGAGGCATGAATAGCTGATGCCCTGCTGAGATGCTTA  850

seq1  CAAATGCCAAGTGGCCTTGGCAGCCAACTGTTCCAATTTCTTTGATTCTG  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAAATGCCAAGTGGCCTTGGCAGCCAACTGTTCCAATTTC-TTGATTCTG  899

seq1  CGTAGAACTCATCAGAAAGTCTTTCCCC-TTTACTAGCAGAGTTTAGCCC  948
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  CGTAGAACTCATCAGAAAGTCTTTCCCCTTTTACTAGCAGAG-TTAGCCC  948

seq1  A-TTTATATCTTGC-TATCTGTCTGTATTGATTTCTACTGCAT  989
      | |||||||||||| | ||||| || || ||||||||||||||
seq2  ATTTTATATCTTGCTTTTCTGTTTGGATAGATTTCTACTGCAT  991

seq1: chr11_86365218_86365785
seq2: B6Ng01-003G02.g_710_995

seq1  CCTATAATCCCAGCTACTCAGCAAGAAGATCTCTGGTTCAATGTCTGCCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAGCTATACAGCAAATTCAGAGTCAGCCTGGGCATTTTAGCAAACTCTTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCAAAATTCAGAGTATATAAACAAAAGGGAACCAAAACAAACAAACAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAAACAAACAAACCCGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCA  200
            |  |  | |||   ||| |   || ||||||   |  |||||  
seq2  ------CCTATCATCCC--AGCTAGTAGGAAGGCTCA---GGCAAGAG--  37

seq1  CTGACTGCTCTTCCAGAGGTCCTAAGTTCAATTCCTGGCAACCACATGGT  250
              | || |         ||||||||     ||| |||      |
seq2  --------TATTAC---------AAGTTCAA----GGGCTACC------T  60

seq1  GGCTCACAACCATCTGTAATAGGATCTGATGCCCTCTTCTGGTGTGTCTG  300
      || | ||||                                |||||| | 
seq2  GGGTTACAA-------------------------------AGTGTGTTT-  78

seq1  AAGACAGCTACAGTGTAGTTATATTAA-TTAATAAATAAATCTTTAAAAA  349
           ||     || |||||  |  || ||| |||     | | |||   
seq2  -----AG-----GTTTAGTTTGAGCAACTTAGTAAGATCCTGTCTAA---  115

seq1  AACAAACAAAAAAAACCCAAAACCAAAAAATTGTAACCGGGTGTGGTGGC  399
             ||  |||||||||                              
seq2  -------AATTAAAACCCAA------------------------------  128

seq1  ACACGTCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGA  449
          | ||||||||||||||| |||||||||||||||||  |||||||||
seq2  ----GCCTTTAATCCCAGCACCTGGGAGGCAGAGGCAGGCAGATTTCTGA  174

seq1  GTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCA-GAGCT  498
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  GTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGGCT  224

seq1  ACACAGAGAAACCCTGTCTTGAAAAATCAAACCAAACAAATAAACAAAAC  548
      | |||||||||||||||||  |||    | ||||||     |||||||||
seq2  ATACAGAGAAACCCTGTCTCAAAA----ACACCAAA-----AAACAAAAC  265

seq1  AAAACAAAACAAAACAAAAA-  568
      |||  || | ||||| |||| 
seq2  AAACAAACAAAAAACCAAAAA  286