BAC Information

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BAC

Clone NameB6Ng01-003H18
Chromosome11 (Build37)
Map Location 79,747,973 - 79,869,480
singlet/doubletdoublet
Overlap geneUtp6, ENSMUSG00000072631, Suz12, Crlf3
Upstream geneNos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584
Downstream geneAtad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3, Accn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003H18.bB6Ng01-003H18.g
ACCDH841181DH841182
length9601,215
definitionDH841181|Mus musculus domesticus DNA, BAC clone: B6Ng01-003H18, 5' end.DH841182|Mus musculus domesticus DNA, BAC clone: B6Ng01-003H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,868,524 - 79,869,480)(79,747,973 - 79,749,199)
sequence
gaattcaagatggcctcagcacaaagcaagtcagcatgggctgtgtaaga
ccctgtctgtacaacaaagcaaactgctcggaggccaagaattatttttc
cctttgtctctgaaaagcagcttactgttaagagcacggcgtgtgtgtaa
ctctgtaaaatataactgaaagcacgccttccctgccatcagctctcctt
tacctgctttcttgttagccgagcagtgtgttctatggtcgtatttctaa
atagctctttgtagaaaaccaaagcccagatgctttggtttggtttggtt
ttggctaagccctgttttggtttgagtgattaaacgtgtgcctggctttt
accatgcgtacttcagggtaacagaatctccgcaagattttaagtctcaa
gattatcaaatatttttatttctttaaaaatgttcttaattgggctggag
agatgactcagcagttaagagcattgcctgctcttatagaggtcctgagt
tcaattcccagtaaccacacagtagctcacaaccatctgtaatgggatct
gatgccctcttctggtgtgtgttgacagggtgctcatgtcattagataga
tagatagatagatagatagatagatagatagatagatagatagatagata
gatagatagacaaatagataagtaaataaataatactctttaaaatgttt
ttcttaattacatgtgtgtgcattgtgggatacaaacttgcaggaattgg
attctctttttcaacctcgtaggttctagatttctaatcccattctgggg
ctgtgaccagtgtctttattagaactcctgagcatcttaccaacctcata
tggtagggattttttgtctggtctgttttctgtgtgaaggcaggagagac
atctgggagtcttgtctgaactagtgttgcttgttaccctttccgcttct
catttgaact
gaattcattaggtgttttccatgttattaaatgaacttaatattaattaa
ggcttactattaagtaacttgttcaaaatactttcccaatgatatcaaaa
tgttaaggtccagctgttgaggcctgtaacctcagccacttgagaggctg
aggcaagagcattcaaagttcaaggcctgcctagacctgagaacttttca
ggccagccaaaacttagtgagacctgctcaaaacagaaaataaaaagatg
cctggggtctgtctcagtggtaaagctcttgcctcaaatgcaaatttagg
tttatcacaaacaaacaaatacccagtatcaaaaaaaatgaaaggattta
tttcagcttcctcccttactccccaaatgccctcctttgtgccaatctgc
ccctccaccccctactgaggcacttcccactccctcccccgccacaaagc
tgggcatcctccatgccattcttggcctgtccatccttggggtaaatcgt
ttcctgtgccacctcaaccttcttaaaagacaaacttctcccaataccca
gcgcctccttctctgtcactcatcttccaagtctccctttttcctgcagg
tgaaggaaggcgctatttcttgaatgattgatttaaaagtacagatccaa
ttcagatacaggaaaagaagtcactgttcagcctcacttcggtgatctaa
gtgactttctgctctgctctgccctagtgttgggataatcttgggcactg
taaaggctgtctttgtagtattcagtgttgatttttgaaccagtagagta
ctgtccggactttggtactgttatttttatgaagcatcacctgcatcgaa
gattgtacacattctcctctatcacttctgatttgtttgataaacagctg
atggctgggcaggagagtaaaggtgggacatctagaagagatcggaactc
tgggaagaattgagaggtggggagatctgccggccagacttggaacttga
atgtacggggctgaggaagaggtgatcagccaggtgttaaacatggctaa
gccatagggactaagcttcataaataaagttctttaatcagtattcggga
gctggaaggtggagggcagttcattctcaccctcgttcctcctatctcca
tggtatcatgcaggctttcacagaagaaaccaaagctatcttctctggtt
gacactgggtccctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_79868524_79869480
seq2: B6Ng01-003H18.b_44_1003 (reverse)

seq1  AGTTCAAATGATGTGGCTG-AAGGGGAACACAGCAACACTAGCTCAGACA  49
      ||||||||||| |  || | ||||| |||| ||||||||||| |||||||
seq2  AGTTCAAATGA-GAAGCGGAAAGGGTAACA-AGCAACACTAGTTCAGACA  48

seq1  AAACTTCCAGATGT-TCTCCCACGCCTCACACAAGAAAACAGAACAGAC-  97
      | ||| |||||||| |||||  | | |||||| |||||||||| ||||| 
seq2  AGACTCCCAGATGTCTCTCCTGC-CTTCACAC-AGAAAACAGACCAGACA  96

seq1  AAAAATCCCTACCATATGAGGTTGGTAAGATGCTCAGG-GTTCTAATAAA  146
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAAATCCCTACCATATGAGGTTGGTAAGATGCTCAGGAGTTCTAATAAA  146

seq1  GACACTGGTCACAG-CCCAGAATGGGATTGGAAATCTAGAACCTACGAGG  195
      |||||||||||||| |||||||||||||| ||||||||||||||||||||
seq2  GACACTGGTCACAGCCCCAGAATGGGATTAGAAATCTAGAACCTACGAGG  196

seq1  TAGAAAAAGAGAATCC-ATTCCTGCAAGTTTGTATCCCACAATGCACACA  244
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGAAAAAGAGAATCCAATTCCTGCAAGTTTGTATCCCACAATGCACACA  246

seq1  CATGTAATTAAGAAAAACA-TTTAAAGAGTATTATTTATTTACTTATCTA  293
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATGTAATTAAGAAAAACATTTTAAAGAGTATTATTTATTTACTTATCTA  296

seq1  TTTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATC  346

seq1  TATCTATCTATCTATCTATCTAATGACATGAGCACCCTGTCAACACACAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTAATGACATGAGCACCCTGTCAACACACAC  396

seq1  CAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCTACTGTGTGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCTACTGTGTGG  446

seq1  TTACTGGGAATTGAACTCAGGACCTCTATAAGAGCAGGCAATGCTCTTAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGGAATTGAACTCAGGACCTCTATAAGAGCAGGCAATGCTCTTAA  496

seq1  CTGCTGAGTCATCTCTCCAGCCCAATTAAGAACATTTTTAAAGAAATAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGTCATCTCTCCAGCCCAATTAAGAACATTTTTAAAGAAATAAA  546

seq1  AATATTTGATAATCTTGAGACTTAAAATCTTGCGGAGATTCTGTTACCCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGATAATCTTGAGACTTAAAATCTTGCGGAGATTCTGTTACCCT  596

seq1  GAAGTACGCATGGTAAAAGCCAGGCACACGTTTAATCACTCAAACCAAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACGCATGGTAAAAGCCAGGCACACGTTTAATCACTCAAACCAAAA  646

seq1  CAGGGCTTAGCCAAAACCAAACCAAACCAAAGCATCTGGGCTTTGGTTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTTAGCCAAAACCAAACCAAACCAAAGCATCTGGGCTTTGGTTTT  696

seq1  CTACAAAGAGCTATTTAGAAATACGACCATAGAACACACTGCTCGGCTAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGAGCTATTTAGAAATACGACCATAGAACACACTGCTCGGCTAA  746

seq1  CAAGAAAGCAGGTAAAGGAGAGCTGATGGCAGGGAAGGCGTGCTTTCAGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGCAGGTAAAGGAGAGCTGATGGCAGGGAAGGCGTGCTTTCAGT  796

seq1  TATATTTTACAGAGTTACACACACGCCGTGCTCTTAACAGTAAGCTGCTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTACAGAGTTACACACACGCCGTGCTCTTAACAGTAAGCTGCTT  846

seq1  TTCAGAGACAAAGGGAAAAATAATTCTTGGCCTCCGAGCAGTTTGCTTTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGACAAAGGGAAAAATAATTCTTGGCCTCCGAGCAGTTTGCTTTG  896

seq1  TTGTACAGACAGGGTCTTACACAGCCCATGCTGACTTGCTTTGTGCTGAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGACAGGGTCTTACACAGCCCATGCTGACTTGCTTTGTGCTGAG  946

seq1  GCCATCTTGAATTC  957
      ||||||||||||||
seq2  GCCATCTTGAATTC  960

seq1: chr11_79747973_79749199
seq2: B6Ng01-003H18.g_67_1281

seq1  GAATTCATTAGGTGTTTTCCATGTTATTAAATGAACTTAATATTAATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGGTGTTTTCCATGTTATTAAATGAACTTAATATTAATTAA  50

seq1  GGCTTACTATTAAGTAACTTGTTCAAAATACTTTCCCAATGATATCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACTATTAAGTAACTTGTTCAAAATACTTTCCCAATGATATCAAAA  100

seq1  TGTTAAGGTCCAGCTGTTGAGGCCTGTAACCTCAGCCACTTGAGAGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGGTCCAGCTGTTGAGGCCTGTAACCTCAGCCACTTGAGAGGCTG  150

seq1  AGGCAAGAGCATTCAAAGTTCAAGGCCTGCCTAGACCTGAGAACTTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGAGCATTCAAAGTTCAAGGCCTGCCTAGACCTGAGAACTTTTCA  200

seq1  GGCCAGCCAAAACTTAGTGAGACCTGCTCAAAACAGAAAATAAAAAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCAAAACTTAGTGAGACCTGCTCAAAACAGAAAATAAAAAGATG  250

seq1  CCTGGGGTCTGTCTCAGTGGTAAAGCTCTTGCCTCAAATGCAAATTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGTCTGTCTCAGTGGTAAAGCTCTTGCCTCAAATGCAAATTTAGG  300

seq1  TTTATCACAAACAAACAAATACCCAGTATCAAAAAAAATGAAAGGATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACAAACAAACAAATACCCAGTATCAAAAAAAATGAAAGGATTTA  350

seq1  TTTCAGCTTCCTCCCTTACTCCCCAAATGCCCTCCTTTGTGCCAATCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTTCCTCCCTTACTCCCCAAATGCCCTCCTTTGTGCCAATCTGC  400

seq1  CCCTCCACCCCCTACTGAGGCACTTCCCACTCCCTCCCCCGCCACAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCACCCCCTACTGAGGCACTTCCCACTCCCTCCCCCGCCACAAAGC  450

seq1  TGGGCATCCTCCATGCCATTCTTGGCCTGTCCATCCTTGGGGTAAATCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATCCTCCATGCCATTCTTGGCCTGTCCATCCTTGGGGTAAATCGT  500

seq1  TTCCTGTGCCACCTCAACCTTCTTAAAAGACAAACTTCTCCCAATACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGCCACCTCAACCTTCTTAAAAGACAAACTTCTCCCAATACCCA  550

seq1  GCGCCTCCTTCTCTGTCACTCATCTTCCAAGTCTCCCTTTTTCCTGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTCCTTCTCTGTCACTCATCTTCCAAGTCTCCCTTTTTCCTGCAGG  600

seq1  TGAAGGAAGGCGCTATTTCTTGAATGATTGATTTAAAAGTACAGATCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAAGGCGCTATTTCTTGAATGATTGATTTAAAAGTACAGATCCAA  650

seq1  TTCAGATACAGGAAAAGAAGTCACTGTTCAGCCTCACTTCGGTGATCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATACAGGAAAAGAAGTCACTGTTCAGCCTCACTTCGGTGATCTAA  700

seq1  GTGACTTTCTGCTCTGCTCTGCCCTAGTGTTGGGATAATCTTGGGCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTTCTGCTCTGCTCTGCCCTAGTGTTGGGATAATCTTGGGCACTG  750

seq1  TAAAGGCTGTCTTTGTAGTATTCAGTGTTGATTTTTGAACCAGTAGAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCTGTCTTTGTAGTATTCAGTGTTGATTTTTGAACCAGTAGAGTA  800

seq1  CTGTCCGGACTTTGGTACTGTTATTTTTATGAAGCATCACCTGCATCGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCGGACTTTGGTACTGTTATTTTTATGAAGCATCACCTGCATCGAA  850

seq1  GATTGTACACATTCTCCTCTATCACTTCTGATTTGTTTGATAAACAGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTACACATTCTCCTCTATCACTTCTGATTTGTTTGATAAACAGCTG  900

seq1  ATGGCTGGGCAGGAGAGTAAAGGTGGGACATCCAAGAAGAGATCGGAACT  950
      ||||||||||||||||||||||||||||||| | ||||||||||||||||
seq2  ATGGCTGGGCAGGAGAGTAAAGGTGGGACAT-CTAGAAGAGATCGGAACT  949

seq1  CTGGGAAGAATTGAGAGGT-GGGAGATCTGCCGGCCAGACTTGGAACTTG  999
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGGGAAGAATTGAGAGGTGGGGAGATCTGCCGGCCAGACTTGGAACTTG  999

seq1  AATGTACGGGGCTGAGG-AGAGGTGATCAGCCAGGTGGTAAACATGGCTA  1048
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  AATGTACGGGGCTGAGGAAGAGGTGATCAGCCAGGTGTTAAACATGGCTA  1049

seq1  AGCCATAAGGACTAAGCTTTCATAAATAAAGTCTCTTAATCAGTATTCGG  1098
      ||||||| ||||||||| ||||||||||||||   |||||||||||||||
seq2  AGCCATAGGGACTAAGC-TTCATAAATAAAGTTCTTTAATCAGTATTCGG  1098

seq1  GAGCTGGAGGGTTGA-GGCAGTCCATCCACACCCTCGTCCCTCCTATCTC  1147
      |||||||| ||| || |||||| ||| | ||||||||| |||||||||||
seq2  GAGCTGGAAGGTGGAGGGCAGTTCATTCTCACCCTCGTTCCTCCTATCTC  1148

seq1  CACAGGTATCATGCAGGCTTTCACAACAAGAAGAGAACACACAAAACTAT  1197
      ||  ||||||||||||||||||||    |||||| |||   |||| ||||
seq2  CA-TGGTATCATGCAGGCTTTCAC----AGAAGA-AAC---CAAAGCTAT  1189

seq1  ACTTTCTCTTGGGTTTGAACTGGGTCCCTC  1227
         ||||||  ||||   ||||||||||||
seq2  --CTTCTCT--GGTTGACACTGGGTCCCTC  1215