BAC Information

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BAC

Clone NameB6Ng01-003P14
Chromosome11 (Build37)
Map Location 78,638,136 - 78,776,794
singlet/doubletdoublet
Overlap gene1810012P15Rik, Nos2
Upstream geneMyo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik
Downstream geneLgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003P14.bB6Ng01-003P14.g
ACCDH841518DH841519
length862941
definitionDH841518|Mus musculus domesticus DNA, BAC clone: B6Ng01-003P14, 5' end.DH841519|Mus musculus domesticus DNA, BAC clone: B6Ng01-003P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,775,925 - 78,776,794)(78,638,136 - 78,639,082)
sequence
gaattccaggaaggtgaaattcccaattgactccctccacaaagggggtt
ttctaggctgtgtggcacatggctgtcagcccatagtctgagccattgcc
cccaagctagctatatactgagggaagtgaccctcctgggtttgctcaga
tctctgatcgttcccccctctgtggcccttttctttcacccctccaggag
agccaccctgatatcatcccactggcctccaactgacccacaatgtccac
agtaactttcccccattctcacccagtatccataaaataaagaaataata
ttgcttgtctacacacacatgtgagatggctggcttattgaacgggccta
gagacattctggaacctaccaaagggaatggtaggagacaggtctgtgcc
ctgcttataggggtccctcctcccaaaccccataaggtgcaaactggggc
ccagggtctctgacaagaatgcaagcctcggtgtaaaccagggagcaacc
tcatgctctaagatggaagaggtgctgggcagaggctgtgggagccctgg
cagcttgtgctgggtgggaggagaggtaatggggtcaggaggagctggcc
tgctgtgagctccccagcagaagagtctggggtggggacctgccattagg
gaccctgaatgatcctaactccttgaggctcccctccctcaggaccaggg
tggggacttcagatcatcagctttcagcaacacccgggagctggtcagaa
atgcagcagcccacctggcaggctgagcatgaggatggcaagttcagacc
actggatacagtgtgatcttgtctcacatacagacatgaagaaaaacagc
ttgggtccttcc
gaattctttagttttactactgaaatgaaaagaaatttaaagtttctgtc
aagttaaaaagaatcactatttccttattctttttttgttttttattttc
ttccttcctttcttctttcttttgttttgttttgttttatttgtgttttt
ttttttttttttttttttgcttttacaagacaaaacagccctgtttctct
gtgtaacagccctgggtgtcctggaactcgatttgtagagcagcctggcc
tcgaactcacagagctccacctgcctctgcctctggagtgtttggattaa
aggtgtgcacctccttgcctggcttggattattcttaaatccaagttctc
actgtgactcggtaaaagaaagggagctgctatccacatctctccctcaa
gctaaaaaataaaaaaatttcttttctgttctttctcttttgtgctgcct
agctgtcgacaaagagttttcgagaaagataaatgttgtgtctctgtaaa
gacagaagtaacacaagaggcaggaaggtggagcctttcggaggtagagc
taacagcttgcttcttgaatattttatgacctaggtattagaatgaggct
tctgaagcaggaacacggagatctaggaacaaaagagggggactgagaga
acagattgaaatttcttaaaaatatgaaaggatcttaatgttgtacgaga
gagtggattggtgtccctagcaggttgctcctagtaaaggctctaaaagc
gtaatgatttattgattggatctgcactaatgacatgccgtgattatgca
tgggtaaataaaaggctgatttatgaagggtgcattcgatctttcgatac
agttgggtccaagtctacagtttgaaaataatgaagaaatatctgggtat
tcaaggggaggatcttctcacacagatttgagacgggtaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_78775925_78776794
seq2: B6Ng01-003P14.b_45_906 (reverse)

seq1  GGAAGGACCCAATGCTGCTTTTTCTTTCATGTCTGTTATGTGAGACAAGA  50
      |||||||||||| |||| |||||| |||||||||| ||||||||||||||
seq2  GGAAGGACCCAA-GCTG-TTTTTC-TTCATGTCTG-TATGTGAGACAAGA  46

seq1  TCACACTGTATCCCAAGCTGGTCTTGAACTTGCCATCCTCCTGCCTCAGC  100
      |||||||||||||  || ||||| |||||||||||||||| || ||||||
seq2  TCACACTGTATCC--AG-TGGTC-TGAACTTGCCATCCTCATG-CTCAGC  91

seq1  CTGCCAGGTGGGCTGCTGCATTTCTGACCAGCTCCCGGGTGTTGCTG-AA  149
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGCCAGGTGGGCTGCTGCATTTCTGACCAGCTCCCGGGTGTTGCTGAAA  141

seq1  GCTGATGATCTGAAGTCCCCACCCTGGTCCTGAGGGAGGGGAGCCTCAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGATCTGAAGTCCCCACCCTGGTCCTGAGGGAGGGGAGCCTCAAG  191

seq1  GAGTTAGGATCATTCAGGGTCCCTAATGGCAGGTCCCCACCCCAGACTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGGATCATTCAGGGTCCCTAATGGCAGGTCCCCACCCCAGACTCT  241

seq1  TCTGCTGGGGAGCTCACAGCAGGCCAGCTCCTCCTGACCCCATTACCTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGGGAGCTCACAGCAGGCCAGCTCCTCCTGACCCCATTACCTCT  291

seq1  CCTCCCACCCAGCACAAGCTGCCAGGGCTCCCACAGCCTCTGCCCAGCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACCCAGCACAAGCTGCCAGGGCTCCCACAGCCTCTGCCCAGCAC  341

seq1  CTCTTCCATCTTAGAGCATGAGGTTGCTCCCTGGTTTACACCGAGGCTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCATCTTAGAGCATGAGGTTGCTCCCTGGTTTACACCGAGGCTTG  391

seq1  CATTCTTGTCAGAGACCCTGGGCCCCAGTTTGCACCTTATGGGGTTTGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGTCAGAGACCCTGGGCCCCAGTTTGCACCTTATGGGGTTTGGG  441

seq1  AGGAGGGACCCCTATAAGCAGGGCACAGACCTGTCTCCTACCATTCCCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGACCCCTATAAGCAGGGCACAGACCTGTCTCCTACCATTCCCTT  491

seq1  TGGTAGGTTCCAGAATGTCTCTAGGCCCGTTCAATAAGCCAGCCATCTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGTTCCAGAATGTCTCTAGGCCCGTTCAATAAGCCAGCCATCTCA  541

seq1  CATGTGTGTGTAGACAAGCAATATTATTTCTTTATTTTATGGATACTGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGTGTAGACAAGCAATATTATTTCTTTATTTTATGGATACTGGG  591

seq1  TGAGAATGGGGGAAAGTTACTGTGGACATTGTGGGTCAGTTGGAGGCCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGGGGGAAAGTTACTGTGGACATTGTGGGTCAGTTGGAGGCCAG  641

seq1  TGGGATGATATCAGGGTGGCTCTCCTGGAGGGGTGAAAGAAAAGGGCCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGATATCAGGGTGGCTCTCCTGGAGGGGTGAAAGAAAAGGGCCAC  691

seq1  AGAGGGGGGAACGATCAGAGATCTGAGCAAACCCAGGAGGGTCACTTCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGGGAACGATCAGAGATCTGAGCAAACCCAGGAGGGTCACTTCCC  741

seq1  TCAGTATATAGCTAGCTTGGGGGCAATGGCTCAGACTATGGGCTGACAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATATAGCTAGCTTGGGGGCAATGGCTCAGACTATGGGCTGACAGC  791

seq1  CATGTGCCACACAGCCTAGAAAACCCCCTTTGTGGAGGGAGTCAATTGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCACACAGCCTAGAAAACCCCCTTTGTGGAGGGAGTCAATTGGG  841

seq1  AATTTCACCTTCCTGGAATTC  870
      |||||||||||||||||||||
seq2  AATTTCACCTTCCTGGAATTC  862

seq1: chr11_78638136_78639082
seq2: B6Ng01-003P14.g_71_1011

seq1  GAATTCTTTAGTTTTACTACTGAAATGAAAAGAAATTTAAAGTTTCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGTTTTACTACTGAAATGAAAAGAAATTTAAAGTTTCTGTC  50

seq1  AAGTTAAAAAGAATCACTATTTCCTTATTCTTTTTTTGTTTTTTATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAAAAGAATCACTATTTCCTTATTCTTTTTTTGTTTTTTATTTTC  100

seq1  TTCCTTCCTTTCTTCTTTCTTTTGTTTTGTTTTGTTTTATTTGTGTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTTCTTCTTTCTTTTGTTTTGTTTTGTTTTATTTGTGTTTTT  150

seq1  TTTTTTTTTTTTTTTTTTGCTTTTACAAGACAAAACAGCCCTGTTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTGCTTTTACAAGACAAAACAGCCCTGTTTCTCT  200

seq1  GTGTAACAGCCCTGGGTGTCCTGGAACTCGATTTGTAGAGCAGCCTGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACAGCCCTGGGTGTCCTGGAACTCGATTTGTAGAGCAGCCTGGCC  250

seq1  TCGAACTCACAGAGCTCCACCTGCCTCTGCCTCTGGAGTGTTTGGATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCACAGAGCTCCACCTGCCTCTGCCTCTGGAGTGTTTGGATTAA  300

seq1  AGGTGTGCACCTCCTTGCCTGGCTTGGATTATTCTTAAATCCAAGTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGCACCTCCTTGCCTGGCTTGGATTATTCTTAAATCCAAGTTCTC  350

seq1  ACTGTGACTCGGTAAAAGAAAGGGAGCTGCTATCCACATCTCTCCCTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGACTCGGTAAAAGAAAGGGAGCTGCTATCCACATCTCTCCCTCAA  400

seq1  GCTAAAAAATAAAAAAATTTCTTTTCTGTTCTTTCTCTTTTGTGCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAAATAAAAAAATTTCTTTTCTGTTCTTTCTCTTTTGTGCTGCCT  450

seq1  AGCTGTCGACAAAGAGTTTTCGAGAAAGATAAATGTTGTGTCTCTGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCGACAAAGAGTTTTCGAGAAAGATAAATGTTGTGTCTCTGTAAA  500

seq1  GACAGAAGTAACACAAGAGGCAGGAAGGTGGAGCCTTTCGGAGGTAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGTAACACAAGAGGCAGGAAGGTGGAGCCTTTCGGAGGTAGAGC  550

seq1  TAACAGCTTGCTTCTTGAATATTTTATGACCTAGGTATTAGAATGAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCTTGCTTCTTGAATATTTTATGACCTAGGTATTAGAATGAGGCT  600

seq1  TCTGAAGCAGGAACACGGAGATCTAGGAACAAAAGAGGGGGACTGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCAGGAACACGGAGATCTAGGAACAAAAGAGGGGGACTGAGAGA  650

seq1  ACAGATTGAAATTTCTTAAAAATATGAAAGGATCTTAATGTTGTACGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTGAAATTTCTTAAAAATATGAAAGGATCTTAATGTTGTACGAGA  700

seq1  GAGTGGATTGGTGTCCC-AGCAGGTTGCTCCTAGTAAGGGCTCTAAAAGC  749
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  GAGTGGATTGGTGTCCCTAGCAGGTTGCTCCTAGTAAAGGCTCTAAAAGC  750

seq1  GTAATGATTTATTGATTGGATCTGCACTAATGACATGCCGTGATTATGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGATTTATTGATTGGATCTGCACTAATGACATGCCGTGATTATGCA  800

seq1  TGGGTAAATAAAAAGGCTGATTTATG-AGGGTGCATTCGGATCTTTCAGA  848
      ||||||||| |||||||||||||||| ||||||||||| |||||||| ||
seq2  TGGGTAAAT-AAAAGGCTGATTTATGAAGGGTGCATTC-GATCTTTC-GA  847

seq1  TACAGTT-GGTCCAAGTCTACAGTTTGAAAATAAATGAAGGAAATTATCT  897
      ||||||| |||||||||||||||||||||||| |||||||  || |||||
seq2  TACAGTTGGGTCCAAGTCTACAGTTTGAAAAT-AATGAAG--AAATATCT  894

seq1  GGGTATTCCAGGGGAAGAATCCTCCCACACAGATTTGAAGACGGGGTAGA  947
      |||||||| ||||| || ||| || |||||||||||| |||| |||||||
seq2  GGGTATTCAAGGGG-AGGATCTTCTCACACAGATTTG-AGAC-GGGTAGA  941