BAC Information

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BAC

Clone NameB6Ng01-004F13
Chromosome11 (Build37)
Map Location 40,013,427 - 40,183,827
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004F13.bB6Ng01-004F13.g
ACCDH841782DH841783
length1,0151,197
definitionDH841782|Mus musculus domesticus DNA, BAC clone: B6Ng01-004F13, 5' end.DH841783|Mus musculus domesticus DNA, BAC clone: B6Ng01-004F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,183,141 - 40,183,827)(40,013,427 - 40,014,657)
sequence
gaattcattgcctatgtgggatttacagtaaagtgtattgttgctgtggt
ttgagcatttgtatcttcccacactcattattgtgatctactccacaagg
atacagtattaaagggtatgtggtgggactagaaaagtgggaaggctatg
aggttagaactcttaagaatagttagtatatgtatttagatttccagaga
tcttctttttatggctctttgaagcaggaaagacagttgttatcctgcca
ttcagatcatgttatttcctattcttcatggcagtgaagctgaaaccctc
attcatatttacacacaggttttcagagttctgactcttacgtatttact
ggccatcccctggtcatgtccactcacataaagtttcctctttcccctct
gctggtatactcatctctatcaccaacaatggttgtttttgcagtttcct
atagaattccttgcaagtataaccatgctgtttaatattgctccttgtgc
ttagcataacattttggagatgcatctatgctactgtattaccactcagt
tggtgtatctttattaagtggtattttgttgtgtggtgtgcttttgtgct
atttttcagtttggggctattttgaataaagaaacagctcatttgcatgc
tttatgcaaactatgatatggagttttgtttattatttctttttaggtag
ataacaaggagtaggattctgatgttgggtggaaaaatgtacattttaca
ctatgaatagttggtaatcttccaaagttttaaaatattttccattctca
ttagcagtgtgtgagcgtcccaagtagcttacatttctcattctcctttg
tgtgctttttcttgttttagtgattgtgatcattctagaacattttgcat
tgacacttcatttgtagctaaaattcatatagttctaattcacataccag
tttggggaaactgaaagtgtacagtgaaacttctagaagcataaaggatt
tgggttgagattatc
gaattccatgtttggaagaatgatcttaaataattttctgttactgtgga
taataggtagttattaatttgcgaataaatctagaaccttatacacatta
ttttaaaaagtaattcttaagataaaataagaatatgatgggatataaat
aaaattatagcaagaataaacacataccacctagaagcaggaatatatgt
actgtttcacatcttcccaatatctccacttctcacatgcacaccccaac
attcacctcctgacaagtcactgaaaccattagcagcatctacatattta
tcattctcccaccttacaaaattatttttagcacatctggtgattggact
tgatctggtcatttccctttcatgcaggacatttattcctgatgtttctg
taaggtatctatggtcctatttattgatagtcctaaaactcttaaataaa
aagattttcctttaagtaactcgaagttaactctatctccatctctcctc
taagccctaatttaatcaatggtttccacatgaattatacagttcattca
tcaccaatgaagtgcgcactgaaatgcttgttttgaatttattctgaaca
tattgcatcacacgttgcaaatttaagcattggggatgttttataatatg
taaaagtttcacaaatgtaatttcttaccatcaaaattatgtgactaagg
accacttttttcagttggcgtttgagagttgccctatatacagtttaagg
cataaaaagacttgacaaatggcaaaagtttgatggtctttcttaacatg
gtgttagtgttccttcatagaaaagatataaagtgtatttaaggtctcag
acggactcatgaaagagatgtagataaaaagcacgacagctggacaggaa
ttagaacagtactcggaactgaagcctaaatatagcatggggatatctct
aagccaacacaggaagaaaagatgactttctcattcaaatattacatccc
taaaactccattcttgactttgtgagtactacagaaaagcatggcaggtg
gtaaaatgtctacttttattacacatctctcctcacgagatgatgtacag
agaatctcttagctgagattggcaagtgaatttacgaaataatgataaca
ccctatgtgtttgcaaaggttggcccaagaattgaagacgtttttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40183141_40183827
seq2: B6Ng01-004F13.b_45_731 (reverse)

seq1  AATAATAAACAAAACTCCATATCATAGTTTGCATAAAGCATGCAAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAACAAAACTCCATATCATAGTTTGCATAAAGCATGCAAATGAG  50

seq1  CTGTTTCTTTATTCAAAATAGCCCCAAACTGAAAAATAGCACAAAAGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTTTATTCAAAATAGCCCCAAACTGAAAAATAGCACAAAAGCAC  100

seq1  ACCACACAACAAAATACCACTTAATAAAGATACACCAACTGAGTGGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACAACAAAATACCACTTAATAAAGATACACCAACTGAGTGGTAAT  150

seq1  ACAGTAGCATAGATGCATCTCCAAAATGTTATGCTAAGCACAAGGAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGCATAGATGCATCTCCAAAATGTTATGCTAAGCACAAGGAGCAA  200

seq1  TATTAAACAGCATGGTTATACTTGCAAGGAATTCTATAGGAAACTGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACAGCATGGTTATACTTGCAAGGAATTCTATAGGAAACTGCAAA  250

seq1  AACAACCATTGTTGGTGATAGAGATGAGTATACCAGCAGAGGGGAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCATTGTTGGTGATAGAGATGAGTATACCAGCAGAGGGGAAAGAG  300

seq1  GAAACTTTATGTGAGTGGACATGACCAGGGGATGGCCAGTAAATACGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTATGTGAGTGGACATGACCAGGGGATGGCCAGTAAATACGTAA  350

seq1  GAGTCAGAACTCTGAAAACCTGTGTGTAAATATGAATGAGGGTTTCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAACTCTGAAAACCTGTGTGTAAATATGAATGAGGGTTTCAGCT  400

seq1  TCACTGCCATGAAGAATAGGAAATAACATGATCTGAATGGCAGGATAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCCATGAAGAATAGGAAATAACATGATCTGAATGGCAGGATAACA  450

seq1  ACTGTCTTTCCTGCTTCAAAGAGCCATAAAAAGAAGATCTCTGGAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTTCCTGCTTCAAAGAGCCATAAAAAGAAGATCTCTGGAAATCT  500

seq1  AAATACATATACTAACTATTCTTAAGAGTTCTAACCTCATAGCCTTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATATACTAACTATTCTTAAGAGTTCTAACCTCATAGCCTTCCCA  550

seq1  CTTTTCTAGTCCCACCACATACCCTTTAATACTGTATCCTTGTGGAGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTAGTCCCACCACATACCCTTTAATACTGTATCCTTGTGGAGTAG  600

seq1  ATCACAATAATGAGTGTGGGAAGATACAAATGCTCAAACCACAGCAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAATAATGAGTGTGGGAAGATACAAATGCTCAAACCACAGCAACAA  650

seq1  TACACTTTACTGTAAATCCCACATAGGCAATGAATTC  687
      |||||||||||||||||||||||||||||||||||||
seq2  TACACTTTACTGTAAATCCCACATAGGCAATGAATTC  687

seq1: chr11_40013427_40014657
seq2: B6Ng01-004F13.g_66_1262

seq1  GAATTCCATGTTTGGAAGAATGATCTTAAATAATTTTCTGTTACTGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTTTGGAAGAATGATCTTAAATAATTTTCTGTTACTGTGGA  50

seq1  TAATAGGTAGTTATTAATTTGCGAATAAATCTAGAACCTTATACACATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGTAGTTATTAATTTGCGAATAAATCTAGAACCTTATACACATTA  100

seq1  TTTTAAAAAGTAATTCTTAAGATAAAATAAGAATATGATGGGATATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAGTAATTCTTAAGATAAAATAAGAATATGATGGGATATAAAT  150

seq1  AAAATTATAGCAAGAATAAACACATACCACCTAGAAGCAGGAATATATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATAGCAAGAATAAACACATACCACCTAGAAGCAGGAATATATGT  200

seq1  ACTGTTTCACATCTTCCCAATATCTCCACTTCTCACATGCACACCCCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCACATCTTCCCAATATCTCCACTTCTCACATGCACACCCCAAC  250

seq1  ATTCACCTCCTGACAAGTCACTGAAACCATTAGCAGCATCTACATATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCTCCTGACAAGTCACTGAAACCATTAGCAGCATCTACATATTTA  300

seq1  TCATTCTCCCACCTTACAAAATTATTTTTAGCACATCTGGTGATTGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCCCACCTTACAAAATTATTTTTAGCACATCTGGTGATTGGACT  350

seq1  TGATCTGGTCATTTCCCTTTCATGCAGGACATTTATTCCTGATGTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGGTCATTTCCCTTTCATGCAGGACATTTATTCCTGATGTTTCTG  400

seq1  TAAGGTATCTATGGTCCTATTTATTGATAGTCCTAAAACTCTTAAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTATCTATGGTCCTATTTATTGATAGTCCTAAAACTCTTAAATAAA  450

seq1  AAGATTTTCCTTTAAGTAACTCGAAGTTAACTCTATCTCCATCTCTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTCCTTTAAGTAACTCGAAGTTAACTCTATCTCCATCTCTCCTC  500

seq1  TAAGCCCTAATTTAATCAATGGTTTCCACATGAATTATACAGTTCATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCTAATTTAATCAATGGTTTCCACATGAATTATACAGTTCATTCA  550

seq1  TCACCAATGAAGTGCGCACTGAAATGCTTGTTTTGAATTTATTCTGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAATGAAGTGCGCACTGAAATGCTTGTTTTGAATTTATTCTGAACA  600

seq1  TATTGCATCACACGTTGCAAATTTAAGCATTGGGGATGTTTTATAATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCATCACACGTTGCAAATTTAAGCATTGGGGATGTTTTATAATATG  650

seq1  TAAAAGTTTCACAAATGTAATTTCTTACCATCAAAATTATGTGACTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTTCACAAATGTAATTTCTTACCATCAAAATTATGTGACTAAGG  700

seq1  ACCACTTTTTTCAGTTGGCGTTTGAGAGTTGCCCTATATACAGTTTAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTTTTTCAGTTGGCGTTTGAGAGTTGCCCTATATACAGTTTAAGG  750

seq1  CATAAAAAGACTTGACAAATGGCAAAAGTTTGATGGTCTTTCTTAACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAAGACTTGACAAATGGCAAAAGTTTGATGGTCTTTCTTAACATG  800

seq1  GTGTTAGTGTTCCTTCATAGAAAAGATATAAAGTGTATTTAAGGTCTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGTGTTCCTTCATAGAAAAGATATAAAGTGTATTTAAGGTCTCAG  850

seq1  ACGGACTCATGAAAGAGATGTAGATAAAAAGCAGGACAGCTGGACAGGAA  900
      ||||||||||||||||||||||||||||||||| |||||||||||||| |
seq2  ACGGACTCATGAAAGAGATGTAGATAAAAAGCACGACAGCTGGACAGG-A  899

seq1  ATTAGAAACAGTACTCGGAACTGAAGCCTAAAATAATAGCATGGGGATAT  950
      ||||| ||||||||||||||||||||||||||   |||||||||||||||
seq2  ATTAG-AACAGTACTCGGAACTGAAGCCTAAA--TATAGCATGGGGATAT  946

seq1  CTTCTAAGCCAACAACAGGAAGGAAAAGATGACTTTCTCATTCAAATATT  1000
      | ||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  C-TCTAAGCCAAC-ACAGGAA-GAAAAGATGACTTTCTCATTCAAATATT  993

seq1  ACATCCCTAAAAACTCCATTCTTGACTTTGTTGAAGTACTACAGGAAAAG  1050
      |||||||| ||||||||||||||||||||||   ||||||||| ||||||
seq2  ACATCCCT-AAAACTCCATTCTTGACTTTGT--GAGTACTACA-GAAAAG  1039

seq1  CCATGGCAGGGTGGTAAAAATGTCTACTTTTATTACAACAATCCTCTCCT  1100
       ||||||| |||||| |||||||||||||||||||| |||   |||||||
seq2  -CATGGCA-GGTGGT-AAAATGTCTACTTTTATTAC-ACA--TCTCTCCT  1083

seq1  CAAACGAGATTGATGTACAGAGATCACCT-TTAGCT-AGATATGGCAAAG  1148
      |  |||||| |||||||||||||  | || |||||| |||| |||| |||
seq2  C--ACGAGA-TGATGTACAGAGA--ATCTCTTAGCTGAGAT-TGGC-AAG  1126

seq1  TGGGATATTTATCGATATAAATAGATAACACCCTATGTTGTTTGCAAATG  1198
      ||    ||||| ||| ||||   |||||||||||||| ||||||||||  
seq2  TG---AATTTA-CGAAATAA--TGATAACACCCTATG-TGTTTGCAAA--  1167

seq1  TGTTTGCCAAAAGTATTTTGAGAACGTTTTTGA  1231
       | ||| |  ||| |  ||||  ||||||||||
seq2  -GGTTGGCCCAAGAA--TTGAAGACGTTTTTGA  1197