BAC Information

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BAC

Clone NameB6Ng01-004M14
Chromosome11 (Build37)
Map Location 74,496,834 - 74,596,945
singlet/doubletdoublet
Overlap genePafah1b1, Mett10d
Upstream gene1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik
Downstream geneMnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004M14.bB6Ng01-004M14.g
ACCDH842102DH842103
length8251,010
definitionDH842102|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M14, 5' end.DH842103|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,496,834 - 74,497,661)(74,595,934 - 74,596,945)
sequence
gaattctaggctacagttttagttgtatccagagaccttagactgaaaat
cacacaagttacctaaggctctgccctatgacacagtaacaaaatcataa
aaagacatgcaatcaatcgtacagtacctcagatcctgttgcttcagaga
tggaagaatatgaactttctggagcccaggaaatgcattccaccacatgt
tcatgttctcggagctcagccttgcattcctttgttgctacaacccacac
acgcacagtctggtcattggaacagctggctatcagagtgccatcctgat
ttggccgcaccatacgtacccattctctgtgtcctgtgaatgtcttcaca
cagtagctgtcaatttaagaagtgtacattgtgaataaatggtaaccact
agaacactttccaaaagtgacacaaattgagatgaagagatatcattagt
tagagaaattacactacatcaaaaaaagaaaagtaaaagtaataaaaaat
gggcactaacctgaagtaaaacaacactaggtaaaataagctgacaagaa
acaccactaaacacaataaaactttaaaacctcaagtctaataaatgcat
accagcagcatatacattatttaaattctaatttaaacccagataagaaa
aacaaaacaaaaaaaaaataacaacaacaaaaataaaccacacagagaag
aaagaaagtagatatctcacagaactggctttcaaaaattcttcctacag
tgcattcatgttcacagtgcatacagtgcagtgtgtgtatgaatggatgg
atgaatgtatgtattgtatgtatgt
gaattccagtacagtcaaaagtacacagggaaactgccttaaaaaaaaaa
aaaaaaacaacaacaaaaccagcataatagtgttcaggaatagtaacagc
caagcgtggtggcacacacctttactctccctacttaggaggcagaaaca
ggcctgttaggtttgaggccagcctggtctacatactgagttccagagcc
cagccagagcatgtaaaagagaccttatctctaaaaacaaaaacaaaaaa
aacttaacaaaatattctattttactcctatggaaccaaccaagttcatt
aaaagggtgggctaatgtcatcgtcttcaatgacagaaatacaattgggg
agtagtgacacacacctttagtcccagtactcgggaggcagaggcaggcg
gatttctgagttcaaggccagcctggtctacagagtgggatccaggacag
gcagagctacacagagaaaccctgtctcagaaaaaaaaccctgtcttgaa
aaaccaaaaataaaaataaaattcaatcctacacaccaaagaaatctata
ttcaagtaaaataataaacattcatatcctattccaatacattgcctaat
ctaatatcctatcatactatgtgtaaagtcttaaattctcaaatgtagaa
gtttagaaattaaaggaacctaataacctagaagctcctcccaaaacaaa
gtttgaaagcattttctcaagagcataaacagtaacttaattactgcctt
acaacttctcaatgatacctgcagcccagttgtgaaaatccagagttaca
aatctagggaatttaccaggaatagctttcaaaataacaattcagggaaa
gaaacattaaataatcaaatgacacaaggtctttatatctgtggacagaa
acaaacttagttcatggctgagcagccagtaaggaccatgctctgataat
agcactattgccatataataggagctatggctacactctcaggttcacag
aaactagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_74496834_74497661
seq2: B6Ng01-004M14.b_47_871

seq1  GAATTCTAGGCTACAGTTTTAGTTGTATCCAGAGACCTTAGACTGAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCTACAGTTTTAGTTGTATCCAGAGACCTTAGACTGAAAAT  50

seq1  CACACAAGTTACCTAAGGCTCTGCCCTATGACACAGTAACAAAATCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGTTACCTAAGGCTCTGCCCTATGACACAGTAACAAAATCATAA  100

seq1  AAAGACATGCAATCAATCGTACAGTACCTCAGATCCTGTTGCTTCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATGCAATCAATCGTACAGTACCTCAGATCCTGTTGCTTCAGAGA  150

seq1  TGGAAGAATATGAACTTTCTGGAGCCCAGGAAATGCATTCCACCACATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAATATGAACTTTCTGGAGCCCAGGAAATGCATTCCACCACATGT  200

seq1  TCATGTTCTCGGAGCTCAGCCTTGCATTCCTTTGTTGCTACAACCCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCTCGGAGCTCAGCCTTGCATTCCTTTGTTGCTACAACCCACAC  250

seq1  ACGCACAGTCTGGTCATTGGAACAGCTGGCTATCAGAGTGCCATCCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACAGTCTGGTCATTGGAACAGCTGGCTATCAGAGTGCCATCCTGAT  300

seq1  TTGGCCGCACCATACGTACCCATTCTCTGTGTCCTGTGAATGTCTTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCGCACCATACGTACCCATTCTCTGTGTCCTGTGAATGTCTTCACA  350

seq1  CAGTAGCTGTCAATTTAAGAAGTGTACATTGTGAATAAATGGTAACCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCTGTCAATTTAAGAAGTGTACATTGTGAATAAATGGTAACCACT  400

seq1  AGAACACTTTCCAAAAGTGACACAAATTGAGATGAAGAGATATCATTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTTTCCAAAAGTGACACAAATTGAGATGAAGAGATATCATTAGT  450

seq1  TAGAGAAATTACACTACATCAAAAAAAGAAAAGTAAAAGTAATAAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAATTACACTACATCAAAAAAAGAAAAGTAAAAGTAATAAAAAAT  500

seq1  GGGCACTAACCTGAAGTAAAACAACACTAGGTAAAATAAGCTGACAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTAACCTGAAGTAAAACAACACTAGGTAAAATAAGCTGACAAGAA  550

seq1  ACACCACTAAACACAATAAAACTTTAAAACCTCAAGTCTAATAAATGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACTAAACACAATAAAACTTTAAAACCTCAAGTCTAATAAATGCAT  600

seq1  ACCAGCAGCATATACATTATTTAAATTCTAATTTAAACCCAGATAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAGCATATACATTATTTAAATTCTAATTTAAACCCAGATAAGAAA  650

seq1  AACAAAACAAAAAAAAAATAACAACAACAAAAATAAACCACACAGAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAAAAAAAATAACAACAACAAAAATAAACCACACAGAGAAG  700

seq1  AAAGAAAGTAGATATCTCACAGAACTGGCTTTCAAAAATTCTTCCTACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGTAGATATCTCACAGAACTGGCTTTCAAAAATTCTTCCTACAG  750

seq1  TGCATTCATGTTCACAGTGCATACAGTGCAGTGTGTGTATGAATGGATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCATGTTCACAGTGCATACAGTGCAGTGTGTGTATGAATGGATGG  800

seq1  ATGAATGTATGTATGTATGTATGTATGT  828
      ||||||||||||||   |||||||||||
seq2  ATGAATGTATGTAT---TGTATGTATGT  825

seq1: chr11_74595934_74596945
seq2: B6Ng01-004M14.g_69_1078 (reverse)

seq1  ACTCTAGGTTTCTGGTGAACCTGGAAGAGTGGTAGCCATAGCT-CTA-TA  48
      |||||| |||||| |||||||||  ||||| |||||||||||| ||| ||
seq2  ACTCTA-GTTTCT-GTGAACCTG--AGAGT-GTAGCCATAGCTCCTATTA  45

seq1  TATGGC-ATAGTGCTA-TATCAGAGCATGGTCCCTTACTGGCTGCTCAGC  96
      |||||| ||||||||| |||||||||||||| ||||||||||||||||||
seq2  TATGGCAATAGTGCTATTATCAGAGCATGGT-CCTTACTGGCTGCTCAGC  94

seq1  CATGAACTAAGTTTGTTTCTGTCCACAGATATAAAGACCTTGTGTCATTT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACTAAGTTTGTTTCTGTCCACAGATATAAAGACCTTGTGTCATTT  144

seq1  GATTATTTAATGTTTCTTTCCCTGAATTGTTATTTTGAAAGCTATTCCTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTAATGTTTCTTTCCCTGAATTGTTATTTTGAAAGCTATTCCTG  194

seq1  GTAAATTCCCTAGATTTGTAACTCTGGATTTTCACAACTGGGCTGCAGGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTCCCTAGATTTGTAACTCTGGATTTTCACAACTGGGCTGCAGGT  244

seq1  ATCATTGAGAAGTTGTAAGGCAGTAATTAAGTTACTGTTTATGCTCTTGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGAGAAGTTGTAAGGCAGTAATTAAGTTACTGTTTATGCTCTTGA  294

seq1  GAAAATGCTTTCAAACTTTGTTTTGGGAGGAGCTTCTAGGTTATTAGGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCTTTCAAACTTTGTTTTGGGAGGAGCTTCTAGGTTATTAGGTT  344

seq1  CCTTTAATTTCTAAACTTCTACATTTGAGAATTTAAGACTTTACACATAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATTTCTAAACTTCTACATTTGAGAATTTAAGACTTTACACATAG  394

seq1  TATGATAGGATATTAGATTAGGCAATGTATTGGAATAGGATATGAATGTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATAGGATATTAGATTAGGCAATGTATTGGAATAGGATATGAATGTT  444

seq1  TATTATTTTACTTGAATATAGATTTCTTTGGTGTGTAGGATTGAATTTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTACTTGAATATAGATTTCTTTGGTGTGTAGGATTGAATTTTA  494

seq1  TTTTTATTTTTGGTTTTTCAAGACAGGGTTTTTTTTCTGAGACAGGGTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTTGGTTTTTCAAGACAGGGTTTTTTTTCTGAGACAGGGTTT  544

seq1  CTCTGTGTAGCTCTGCCTGTCCTGGATCCCACTCTGTAGACCAGGCTGGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTAGCTCTGCCTGTCCTGGATCCCACTCTGTAGACCAGGCTGGC  594

seq1  CTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTACTGGGACTAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTACTGGGACTAAA  644

seq1  GGTGTGTGTCACTACTCCCCAATTGTATTTCTGTCATTGAAGACGATGAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGTCACTACTCCCCAATTGTATTTCTGTCATTGAAGACGATGAC  694

seq1  ATTAGCCCACCCTTTTAATGAACTTGGTTGGTTCCATAGGAGTAAAATAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCCACCCTTTTAATGAACTTGGTTGGTTCCATAGGAGTAAAATAG  744

seq1  AATATTTTGTTAAGTTTTTTTTGTTTTTGTTTTTAGAGATAAGGTCTCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTGTTAAGTTTTTTTTGTTTTTGTTTTTAGAGATAAGGTCTCTT  794

seq1  TTACATGCTCTGGCTGGGCTCTGGAACTCAGTATGTAGACCAGGCTGGCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGCTCTGGCTGGGCTCTGGAACTCAGTATGTAGACCAGGCTGGCC  844

seq1  TCAAACCTAACAGGCCTGTTTCTGCCTCCTAAGTAGGGAGAGTAAAGGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCTAACAGGCCTGTTTCTGCCTCCTAAGTAGGGAGAGTAAAGGTG  894

seq1  TGTGCCACCACGCTTGGCTGTTACTATTCCTGAACACTATTATGCTGGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCACCACGCTTGGCTGTTACTATTCCTGAACACTATTATGCTGGTT  944

seq1  TTGTTGTTGTTTTTTTTTTTTTTTTTAAGGCAGTTTCCCTGTGTACTTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTTTTTTTTTTTTTTTTAAGGCAGTTTCCCTGTGTACTTTT  994

seq1  GACTGTACTGGAATTC  1012
      ||||||||||||||||
seq2  GACTGTACTGGAATTC  1010