BAC Information

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BAC

Clone NameB6Ng01-004O12
Chromosome11 (Build37)
Map Location 111,350,365 - 111,485,317
singlet/doubletdoublet
Overlap geneLOC100041559
Upstream geneMap2k6, LOC100041523, Kcnj16, Kcnj2, LOC667003, LOC100041539
Downstream geneEG629966, LOC629967, LOC100041589, LOC100043020, EG668396, EG667038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004O12.bB6Ng01-004O12.g
ACCDH842191DH842192
length1,1211,109
definitionDH842191|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O12, 5' end.DH842192|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,350,365 - 111,351,504)(111,484,169 - 111,485,317)
sequence
gaattctgtgctaaatccaactggccctgggttcttttgggttggaagat
tttaatgtctgcttctactttcttaggaataataggaacatttaaatttt
ttacctgttcttgatttatttaactttggtaagtgctatctaccaagaaa
atcatgtatttcttttagaatttccaattttgtggagtacaggatcttga
agtaagacttaatgaatctttgaatttccttagttagtctgttgttatat
ctccctttcatttttgattttgctaacttgagtattgtctctctaccttt
tagttagtgtagtttgtggaattgtaatgggaatgcaacagttttataac
gatttttttttcattctgagaacttttaaaatccatgtgttactttgatt
atcagacaaaagtgaatttgaatttttgaagtgcagtattatgtcctatg
ctcataatgtatgtaggttttccagttctgatacactttaatgtgtatac
taccttgtagttttaatgtcctcagatataacactaaatataaatggtga
taaagaacacacttgtcttatgaatgttccttgaagtgtatatgtaacca
ttactagactaatatttctacttctgctcctaagcaggtaacttttctac
tgcatacaataagaacacttgggtaaatcacagaaatcatatttctaatg
aatcaggggacagacaaaacaagtgacattcagtgtactaaaacttcaga
cataatagaattacgcatagatagaggaatatctgtaatatctgtgaagg
ccttgtctgggtccattattgatttgaaatgggcaaaatttgagaacagt
ggcctggcccaggctttggattcctccaggagtataagaagttaggtggt
atttcaatggctgtgtagaggcaataccaagactagagtttatattaaga
tttgtttatttttatttcatggatacagtgtttgtgtgtatgtatgcctg
tgcaccatgtatggatattccttaaagggcctgagaggtgtgattcccct
ggagtgatacaggcagtgtggacacccttcagtcctggaaccaacctcag
ttctacaagagcagtaatacc
gaattccagttaatattaagccaatgtgctccgagtcacatgtgagccag
cctggaatgaagtcacagaatgaaagcaaagatagagaagaagattagtt
taattaggatttcttaagataacatttaatttcataaagtatttgaaggc
tgcaagtctttcctcacatcacaagctgcatgggatacgcatgctttcag
attctccctagaaactgtggtcaacaggattctgcggcattcctaacctc
ccagaggcaaaattaataccagttataataagagactagagaatattaat
ggcatgtgaatggatttgattaataataaaatgtaaggctgtgttcttca
catttttagtccattgatttctgcaaggctctgtccttgatctcctctta
tctggaaattgtaacttggggctgactgcatttgataagaaactaatgcc
ttaaatatacatgagcaaggtgtcttagtgtgtggtacttgaaacagagt
ttaaaaagtgtgcatagagaagcagtatttgaaacagtataggtcacaaa
tgaacttaggatataacagatttatgatttcgagcttctacttcatttat
tcttcatctgtctgagagagacctatagaacaataaaagaaccagaggtt
aaaaataaaatgaccaccactcaatcaaattagtgagaatttctgagtcc
tactaatgggctttcatttttacttgtacgggctgttacatcagaatggt
gaagaggtgtgaccatgtgctacatggtggagtgggtacttggattgctg
ttgggatgatgacaggaagagaaggtattagtgttggcggggaacccatt
tgagatgctttgttaaatactgaagttgaagatgatggaggcagcaaaga
agacacagtgatcacagagaggggtgtgccacggttttgagagctcttta
aaggcagtgatacgtctgtagacagtttatgataagcagagctagcagca
tgcgtcatacacatcccagcagctttcacccagattgtgagcaagcagtg
gatcgagacatagcaaatctagttggtagtacgtagccaaacttcttctg
actctgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_111350365_111351504
seq2: B6Ng01-004O12.b_45_1165

seq1  GAATTCTGTGCTAAATCCAACTGGCCCTGGGTTCTTTTGGGTTGGAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCTAAATCCAACTGGCCCTGGGTTCTTTTGGGTTGGAAGAT  50

seq1  TTTAATGTCTGCTTCTACTTTCTTAGGAATAATAGGAACATTTAAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTCTGCTTCTACTTTCTTAGGAATAATAGGAACATTTAAATTTT  100

seq1  TTACCTGTTCTTGATTTATTTAACTTTGGTAAGTGCTATCTACCAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGTTCTTGATTTATTTAACTTTGGTAAGTGCTATCTACCAAGAAA  150

seq1  ATCATGTATTTCTTTTAGAATTTCCAATTTTGTGGAGTACAGGATCTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTATTTCTTTTAGAATTTCCAATTTTGTGGAGTACAGGATCTTGA  200

seq1  AGTAAGACTTAATGAATCTTTGAATTTCCTTAGTTAGTCTGTTGTTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGACTTAATGAATCTTTGAATTTCCTTAGTTAGTCTGTTGTTATAT  250

seq1  CTCCCTTTCATTTTTGATTTTGCTAACTTGAGTATTGTCTCTCTACCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTCATTTTTGATTTTGCTAACTTGAGTATTGTCTCTCTACCTTT  300

seq1  TAGTTAGTGTAGTTTGTGGAATTGTAATGGGAATGCAACAGTTTTATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGTGTAGTTTGTGGAATTGTAATGGGAATGCAACAGTTTTATAAC  350

seq1  GATTTTTTTTTCATTCTGAGAACTTTTAAAATCCATGTGTTACTTTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTTCATTCTGAGAACTTTTAAAATCCATGTGTTACTTTGATT  400

seq1  ATCAGACAAAAGTGAATTTGAATTTTTGAAGTGCAGTATTATGTCCTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACAAAAGTGAATTTGAATTTTTGAAGTGCAGTATTATGTCCTATG  450

seq1  CTCATAATGTATGTAGGTTTTCCAGTTCTGATACACTTTAATGTGTATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAATGTATGTAGGTTTTCCAGTTCTGATACACTTTAATGTGTATAC  500

seq1  TACCTTGTAGTTTTAATGTCCTCAGATATAACACTAAATATAAATGGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGTAGTTTTAATGTCCTCAGATATAACACTAAATATAAATGGTGA  550

seq1  TAAAGAACACACTTGTCTTATGAATGTTCCTTGAAGTGTATATGTAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACACACTTGTCTTATGAATGTTCCTTGAAGTGTATATGTAACCA  600

seq1  TTACTAGACTAATATTTCTACTTCTGCTCCTAAGCAGGTAACTTTTCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGACTAATATTTCTACTTCTGCTCCTAAGCAGGTAACTTTTCTAC  650

seq1  TGCATACAATAAGAACACTTGGGTAAATCACAGAAATCATATTTCTAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACAATAAGAACACTTGGGTAAATCACAGAAATCATATTTCTAATG  700

seq1  AATCAGGGGACAGACAAAACAAGTGACATTCAGTGTACTAAAACTTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGGGACAGACAAAACAAGTGACATTCAGTGTACTAAAACTTCAGA  750

seq1  CATAATAGAATTACGCATAGATAGAGGAATATCTGTAATATCTGTGAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGAATTACGCATAGATAGAGGAATATCTGTAATATCTGTGAAGG  800

seq1  CCTTGTCTGGGTCCATTATTGATTTGAAATGGGCAAAATTTGAGAACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTGGGTCCATTATTGATTTGAAATGGGCAAAATTTGAGAACAGT  850

seq1  GGCCTGGCCCAGGCTTTGGATTCCTCCAGGAGTATAAGAAGTTAGGTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCCCAGGCTTTGGATTCCTCCAGGAGTATAAGAAGTTAGGTGGT  900

seq1  ATTTCAATGGCTGTGTAAGAAGGCAATACCAAGACTAGAGTTTATATTAA  950
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  ATTTCAATGGCTGTGTA--GAGGCAATACCAAGACTAGAGTTTATATTAA  948

seq1  GATTTGTTTATTTTTATTTCATGGATACAAGTGTTTGTGTGTATGTATGC  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATTTGTTTATTTTTATTTCATGGATAC-AGTGTTTGTGTGTATGTATGC  997

seq1  CTGTGCACCATGTATGGATATTCCTTAAAAGGGCCTGAAGAGGGTGTTGA  1050
      |||||||||||||||||||||||||| |||||||||| ||| |||| |||
seq2  CTGTGCACCATGTATGGATATTCCTT-AAAGGGCCTG-AGA-GGTG-TGA  1043

seq1  ATCCCCTGGAAGTGGAATTACAGGCAGTTGTGAGACA-CCTTCAGGGTCC  1099
       |||||||| ||||    ||||||||| |||| |||| ||||||  ||||
seq2  TTCCCCTGG-AGTG---ATACAGGCAG-TGTG-GACACCCTTCA--GTCC  1085

seq1  TGGAAACCAAACTCAAGTGTTCTACAAGAGCAGTAAATACC  1140
      ||| |||||| ||||   |||||||||||||||| ||||||
seq2  TGG-AACCAACCTCA---GTTCTACAAGAGCAGT-AATACC  1121

seq1: chr11_111484169_111485317
seq2: B6Ng01-004O12.g_68_1176 (reverse)

seq1  ACCCAGAGTCAGGGAAGGAGAGTTTTGCTTAACTGTTACTTACT-CATAC  49
      |||||||||||  |||| ||   ||||       | ||| |||| |  ||
seq2  ACCCAGAGTCA--GAAGAAG---TTTG-------GCTACGTACTACCAAC  38

seq1  TAGTATTTTGCTTATTTTGTCTTCTGTATCTCAACTGCTTGCCTCACCAT  99
      |||   |||||    | ||||     |   || |||||||| ||||| ||
seq2  TAG--ATTTGC----TATGTC-----TCGATCCACTGCTTG-CTCACAAT  76

seq1  ATTCCTGGGTGAAAAGCTGCTGGGATGTGGTTATGACGCATGCTGCTTAG  149
          ||||||| |||||||||||||||||  ||||||||||||||| |||
seq2  ----CTGGGTG-AAAGCTGCTGGGATGTG--TATGACGCATGCTGC-TAG  118

seq1  CTCTGCTTTATTCATAAACTTGGTTCTACAGACGTATCACTTGGCCTTTA  199
      ||||||||   |||||||||    |||||||||||||||||  |||||||
seq2  CTCTGCTT--ATCATAAACT---GTCTACAGACGTATCACT--GCCTTTA  161

seq1  AAGAGCTCTCAAAACCGT-GCACACCCCTCTCTTGTGATCACTGTTGTC-  247
      |||||||||||||||||| ||||||||||||| ||||||||||| |||| 
seq2  AAGAGCTCTCAAAACCGTGGCACACCCCTCTC-TGTGATCACTG-TGTCT  209

seq1  TCTTTGCTGCCTCCATCATCTTCAACCTTCAGTATTTAACAAAGCATCTC  297
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTTTGCTGCCTCCATCATCTTCAA-CTTCAGTATTTAACAAAGCATCTC  258

seq1  AAATGGGTTCCCCGCCAACACTAATACCTTCTCTTCCCTGTCATCATCCC  347
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAATGGGTTCCCCGCCAACACTAATACCTTCTCTT-CCTGTCATCATCCC  307

seq1  AACAGCAATCCAAGTACCCACTCCACCATGTAGCACATGGTCACACCTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAATCCAAGTACCCACTCCACCATGTAGCACATGGTCACACCTCT  357

seq1  TCACCATTCTGATGTAACAGCCCGTACAAGTAAAAATGAAAGCCCATTAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATTCTGATGTAACAGCCCGTACAAGTAAAAATGAAAGCCCATTAG  407

seq1  TAGGACTCAGAAATTCTCACTAATTTGATTGAGTGGTGGTCATTTTATTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTCAGAAATTCTCACTAATTTGATTGAGTGGTGGTCATTTTATTT  457

seq1  TTAACCTCTGGTTCTTTTATTGTTCTATAGGTCTCTCTCAGACAGATGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTCTGGTTCTTTTATTGTTCTATAGGTCTCTCTCAGACAGATGAA  507

seq1  GAATAAATGAAGTAGAAGCTCGAAATCATAAATCTGTTATATCCTAAGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATGAAGTAGAAGCTCGAAATCATAAATCTGTTATATCCTAAGTT  557

seq1  CATTTGTGACCTATACTGTTTCAAATACTGCTTCTCTATGCACACTTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGACCTATACTGTTTCAAATACTGCTTCTCTATGCACACTTTTT  607

seq1  AAACTCTGTTTCAAGTACCACACACTAAGACACCTTGCTCATGTATATTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGTTTCAAGTACCACACACTAAGACACCTTGCTCATGTATATTT  657

seq1  AAGGCATTAGTTTCTTATCAAATGCAGTCAGCCCCAAGTTACAATTTCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTAGTTTCTTATCAAATGCAGTCAGCCCCAAGTTACAATTTCCA  707

seq1  GATAAGAGGAGATCAAGGACAGAGCCTTGCAGAAATCAATGGACTAAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAGGAGATCAAGGACAGAGCCTTGCAGAAATCAATGGACTAAAAA  757

seq1  TGTGAAGAACACAGCCTTACATTTTATTATTAATCAAATCCATTCACATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGAACACAGCCTTACATTTTATTATTAATCAAATCCATTCACATG  807

seq1  CCATTAATATTCTCTAGTCTCTTATTATAACTGGTATTAATTTTGCCTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAATATTCTCTAGTCTCTTATTATAACTGGTATTAATTTTGCCTCT  857

seq1  GGGAGGTTAGGAATGCCGCAGAATCCTGTTGACCACAGTTTCTAGGGAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTTAGGAATGCCGCAGAATCCTGTTGACCACAGTTTCTAGGGAGA  907

seq1  ATCTGAAAGCATGCGTATCCCATGCAGCTTGTGATGTGAGGAAAGACTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAAGCATGCGTATCCCATGCAGCTTGTGATGTGAGGAAAGACTTG  957

seq1  CAGCCTTCAAATACTTTATGAAATTAAATGTTATCTTAAGAAATCCTAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTCAAATACTTTATGAAATTAAATGTTATCTTAAGAAATCCTAAT  1007

seq1  TAAACTAATCTTCTTCTCTATCTTTGCTTTCATTCTGTGACTTCATTCCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAATCTTCTTCTCTATCTTTGCTTTCATTCTGTGACTTCATTCCA  1057

seq1  GGCTGGCTCACATGTGACTCGGAGCACATTGGCTTAATATTAACTGGAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTCACATGTGACTCGGAGCACATTGGCTTAATATTAACTGGAAT  1107

seq1  TC  1149
      ||
seq2  TC  1109