BAC Information

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BAC

Clone NameB6Ng01-005B08
Chromosome11 (Build37)
Map Location 16,446,262 - 16,596,815
singlet/doubletdoublet
Overlap geneLOC665689, LOC627583
Upstream geneLOC665660, Vstm2, Sec61g, Akt2-ps
Downstream geneEgfr, 2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005B08.bB6Ng01-005B08.g
ACCDH842319DH842320
length1,0991,093
definitionDH842319|Mus musculus domesticus DNA, BAC clone: B6Ng01-005B08, 5' end.DH842320|Mus musculus domesticus DNA, BAC clone: B6Ng01-005B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,595,693 - 16,596,815)(16,446,262 - 16,447,356)
sequence
gaattctttgttacagattttctttggtccttgaacaaagaagccagtca
tccccacagtttgttaggataactgaagtggaagacaaatcaagtctggg
catagtcttttactcccgtctttccttggtgaagagaaagtgaagcatgc
tgggaaaatcaggaagagatcacctttggtaaagcaaatagcttaaaaaa
aaacagatgacaaaatgtaatttgagtcccagataccagaaaacaagggg
cagcagttttgttgctgggctgtgaaatcttggatgaagtgacacatgga
gtagcccatttattcccattctggcagaacaggagcattgaaaggaccag
tccaggctctgcacagacctgagactggtcatcatctacaggattagtgc
cttcttttgcttcctgctagtggtttgacacagctagctcaacttctata
gagtttgctcctattattttgcctatttcggtggaatttttagttcagaa
aaatcaggttccttgtttgggggtgtggcaaagagaggaggtgaattaca
ttcagaacatacatatagttacgagaaaaggatgcatctgggacctcaaa
aactagttcctctgcagaacactccacatttccatctgaagagtaaaccc
ctccctatttaaatgttagtgttatcacagggagggctgagagagggaaa
ttccttgagttatttgagatgccatctaactgcatgttatactgtctttt
aggaagagattggaccaaagtggcagatattaccacaagcagtgtagtcc
cctagttgctatggaccaaagaatgagtgtcctctggtaatggagaggta
acacttcaagtgatttaattggcagtaactctccttggtgatttaggata
ggcggaataccagctaccagctcccttttccctctgactcactcactgat
cagaactgaaggatttcttactgtctcatctttccttacaagacaggaat
atctacagatgcagcagctgaaggtgagagtcacccagcacacgagcaat
atgttgcattgatctgtttatttttattcctagcacttcaaatgttctg
gaattcaaatgtcccacacaatgtatgtgccacatgcttctgcttgtgat
gaaaggtttttcaaagttcattttccagagtcaactgtaacattgccaac
tctctccaagggaagacgggcacagatgttccatgatgctcatgaggatt
ggcgttcagtacattgtcttctttgtctcaggccaattctttgcacagtt
ttctccaaggcagcattgtagtgatgtgcacagtcctttttgctaagtga
tgtgaggattcgtgcatctcttctttgggagatcaaaagtgctcatagct
cacatggactcacacacagcacctctctcccagccaagtgaatcattcct
gcagttgactgttagtgccaagttgactcccagccagggcacagtggtta
taactcccaagaaatattcctggcttttttctgaaactttctttgcgtct
tcatttacccttgagtctcccttcattttctgggatttatgttatttgat
acttttcctaacattgtaaaaccatgttaattcaccatttacattgggct
catttctctgttgtttctggacagacatggaggcattaaaaactgcaatc
ctggaggtagttgggttcatctgaagatgtttgatcccagttcttcactg
tgtggtgcccggtgtaatcttatttgttgtcaaagcctggctccagaaaa
ggatatagttttccatatttaacagcagtgcccctgggacctgcctcgcc
tttatgaactcagcctgggctcctcgtgtggggagtcataaaagcaattt
ttgactcaaaccttatatttcttttgggctttaataaagaactatataaa
ctttaacttgggctatgcagatcagaaaaggtaaatgtcactaaagggct
ttcatttaggatcagaattaatatttgacacttttttcttgtcggagaac
aatatcataacccaatggcgatgtttatatgtatcaggtttatttagttc
tacatgccaatacatgtcaagctatggaggaatcccttcttagaccacgt
tctgctaacatgatgtggcacagtggttctcccccccccctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_16595693_16596815
seq2: B6Ng01-005B08.b_47_1145 (reverse)

seq1  CAGAACATTTTGAAAGTGCTAGAGAATAAAAAATAAAACAGAATACAATG  50
      ||||||||||   ||||||||| |||||||||   |||||||   |||||
seq2  CAGAACATTT--GAAGTGCTAG-GAATAAAAA--TAAACAGA--TCAATG  43

seq1  CAAACATATTGCTCTGTGGTTGGCTGGGTGACCTTCTCACCTCTCAGCTG  100
      | ||||||||||||    ||  ||||||||||  |||||||| |||||||
seq2  C-AACATATTGCTC----GTGTGCTGGGTGAC--TCTCACCT-TCAGCTG  85

seq1  CCTTGCATTCTTGTAGATATTCCCTGTCTTGTAAAGGAAAGATGAGACAG  150
      |  |||||   |||||||||| |||||||||| |||||||||||||||||
seq2  C--TGCAT--CTGTAGATATT-CCTGTCTTGT-AAGGAAAGATGAGACAG  129

seq1  TAAGAAATCCTTCAGTTCTGATCAGTGAGTGAGTCAGAGGGGAAAAAGGG  200
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  TAAGAAATCCTTCAGTTCTGATCAGTGAGTGAGTCAGAGGG--AAAAGGG  177

seq1  AGCTGGTAGCTGGTATTCCGCCTTATCCTAAATCACCAAGGAGAGTTACT  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCTGGTAGCTGGTATTCCGCC-TATCCTAAATCACCAAGGAGAGTTACT  226

seq1  GCCAATTAAATCACTTGAAGTGTTACCTCTCCATTACCAGAGGACACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTAAATCACTTGAAGTGTTACCTCTCCATTACCAGAGGACACTCA  276

seq1  TTCTTTGGTCCATAGCAACTAGGGGACTACACTGCTTGTGGTAATATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGTCCATAGCAACTAGGGGACTACACTGCTTGTGGTAATATCTG  326

seq1  CCACTTTGGTCCAATCTCTTCCTAAAAGACAGTATAACATGCAGTTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTGGTCCAATCTCTTCCTAAAAGACAGTATAACATGCAGTTAGAT  376

seq1  GGCATCTCAAATAACTCAAGGAATTTCCCTCTCTCAGCCCTCCCTGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTCAAATAACTCAAGGAATTTCCCTCTCTCAGCCCTCCCTGTGAT  426

seq1  AACACTAACATTTAAATAGGGAGGGGTTTACTCTTCAGATGGAAATGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAACATTTAAATAGGGAGGGGTTTACTCTTCAGATGGAAATGTGG  476

seq1  AGTGTTCTGCAGAGGAACTAGTTTTTGAGGTCCCAGATGCATCCTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTGCAGAGGAACTAGTTTTTGAGGTCCCAGATGCATCCTTTTCT  526

seq1  CGTAACTATATGTATGTTCTGAATGTAATTCACCTCCTCTCTTTGCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAACTATATGTATGTTCTGAATGTAATTCACCTCCTCTCTTTGCCACA  576

seq1  CCCCCAAACAAGGAACCTGATTTTTCTGAACTAAAAATTCCACCGAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAACAAGGAACCTGATTTTTCTGAACTAAAAATTCCACCGAAATA  626

seq1  GGCAAAATAATAGGAGCAAACTCTATAGAAGTTGAGCTAGCTGTGTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAATAATAGGAGCAAACTCTATAGAAGTTGAGCTAGCTGTGTCAAA  676

seq1  CCACTAGCAGGAAGCAAAAGAAGGCACTAATCCTGTAGATGATGACCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGCAGGAAGCAAAAGAAGGCACTAATCCTGTAGATGATGACCAGT  726

seq1  CTCAGGTCTGTGCAGAGCCTGGACTGGTCCTTTCAATGCTCCTGTTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTCTGTGCAGAGCCTGGACTGGTCCTTTCAATGCTCCTGTTCTGC  776

seq1  CAGAATGGGAATAAATGGGCTACTCCATGTGTCACTTCATCCAAGATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGGAATAAATGGGCTACTCCATGTGTCACTTCATCCAAGATTTC  826

seq1  ACAGCCCAGCAACAAAACTGCTGCCCCTTGTTTTCTGGTATCTGGGACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCAGCAACAAAACTGCTGCCCCTTGTTTTCTGGTATCTGGGACTC  876

seq1  AAATTACATTTTGTCATCTGTTTTTTTTTAAGCTATTTGCTTTACCAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACATTTTGTCATCTGTTTTTTTTTAAGCTATTTGCTTTACCAAAG  926

seq1  GTGATCTCTTCCTGATTTTCCCAGCATGCTTCACTTTCTCTTCACCAAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTCTTCCTGATTTTCCCAGCATGCTTCACTTTCTCTTCACCAAGG  976

seq1  AAAGACGGGAGTAAAAGACTATGCCCAGACTTGATTTGTCTTCCACTTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACGGGAGTAAAAGACTATGCCCAGACTTGATTTGTCTTCCACTTCA  1026

seq1  GTTATCCTAACAAACTGTGGGGATGACTGGCTTCTTTGTTCAAGGACCAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCTAACAAACTGTGGGGATGACTGGCTTCTTTGTTCAAGGACCAA  1076

seq1  AGAAAATCTGTAACAAAGAATTC  1123
      |||||||||||||||||||||||
seq2  AGAAAATCTGTAACAAAGAATTC  1099

seq1: chr11_16446262_16447356
seq2: B6Ng01-005B08.g_69_1161

seq1  GAATTCAAATGTCCCACACAATGTATGTGCCACATGCTTCTGCTTGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGTCCCACACAATGTATGTGCCACATGCTTCTGCTTGTGAT  50

seq1  GAAAGGTTTTTCAAAGTTCATTTTCCAGAGTCAACTGTAACATTGCCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTTTTTCAAAGTTCATTTTCCAGAGTCAACTGTAACATTGCCAAC  100

seq1  TCTCTCCAAGGGAAGACGGGCACAGATGTTCCATGATGCTCATGAGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAAGGGAAGACGGGCACAGATGTTCCATGATGCTCATGAGGATT  150

seq1  GGCGTTCAGTACATTGTCTTCTTTGTCTCAGGCCAATTCTTTGCACAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTCAGTACATTGTCTTCTTTGTCTCAGGCCAATTCTTTGCACAGTT  200

seq1  TTCTCCAAGGCAGCATTGTAGTGATGTGCACAGTCCTTTTTGCTAAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAAGGCAGCATTGTAGTGATGTGCACAGTCCTTTTTGCTAAGTGA  250

seq1  TGTGAGGATTCGTGCATCTCTTCTTTGGGAGATCAAAAGTGCTCATAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGATTCGTGCATCTCTTCTTTGGGAGATCAAAAGTGCTCATAGCT  300

seq1  CACATGGACTCACACACAGCACCTCTCTCCCAGCCAAGTGAATCATTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGACTCACACACAGCACCTCTCTCCCAGCCAAGTGAATCATTCCT  350

seq1  GCAGTTGACTGTTAGTGCCAAGTTGACTCCCAGCCAGGGCACAGTGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGACTGTTAGTGCCAAGTTGACTCCCAGCCAGGGCACAGTGGTTA  400

seq1  TAACTCCCAAGAAATATTCCTGGCTTTTTTCTGAAACTTTCTTTGCGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCCAAGAAATATTCCTGGCTTTTTTCTGAAACTTTCTTTGCGTCT  450

seq1  TCATTTACCCTTGAGTCTCCCTTCATTTTCTGGGATTTATGTTATTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACCCTTGAGTCTCCCTTCATTTTCTGGGATTTATGTTATTTGAT  500

seq1  ACTTTTCCTAACATTGTAAAACCATGTTAATTCACCATTTACATTGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCCTAACATTGTAAAACCATGTTAATTCACCATTTACATTGGGCT  550

seq1  CATTTCTCTGTTGTTTCTGGACAGACATGGAGGCATTAAAAACTGCAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCTGTTGTTTCTGGACAGACATGGAGGCATTAAAAACTGCAATC  600

seq1  CTGGAGGTAGTTGGGTTCATCTGAAGATGTTTGATCCCAGTTCTTCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGTAGTTGGGTTCATCTGAAGATGTTTGATCCCAGTTCTTCACTG  650

seq1  TGTGGTGCCCGGTGTAATCTTA-TTGTTGTCAAAGCCTGGCTCCAGAAAA  699
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTGGTGCCCGGTGTAATCTTATTTGTTGTCAAAGCCTGGCTCCAGAAAA  700

seq1  GGAAATAGTTTTCCATATTTAACAGCAGTGCCCCTGGGACCTGCCTCGCC  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAGTTTTCCATATTTAACAGCAGTGCCCCTGGGACCTGCCTCGCC  750

seq1  TTTATGAACTCAGCCTGGGCTCCTCGTGT-GGGAGTCATAAAAGCAA-TT  797
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  TTTATGAACTCAGCCTGGGCTCCTCGTGTGGGGAGTCATAAAAGCAATTT  800

seq1  TTGACTCAAACC-TATATTTCTTTT-GGCTTTAATAAAGAACTATATAAA  845
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  TTGACTCAAACCTTATATTTCTTTTGGGCTTTAATAAAGAACTATATAAA  850

seq1  CTTTAACTT-GGCTATGCAGATCAGAAAA-GTAAATGTCACTAAA-GGCC  892
      ||||||||| ||||||||||||||||||| ||||||||||||||| ||| 
seq2  CTTTAACTTGGGCTATGCAGATCAGAAAAGGTAAATGTCACTAAAGGGCT  900

seq1  TTCATTTAAGATCAGAATTAATATTTGACACTTTTT--CTGTCAGAGACA  940
      |||||||| |||||||||||||||||||||||||||   |||| ||||  
seq2  TTCATTTAGGATCAGAATTAATATTTGACACTTTTTTCTTGTCGGAGAAC  950

seq1  AATA-CATAAACACAAATGGCGATGTTTATAATGTAATCA-GTTTAATTA  988
      |||| |||||   | ||||||||||||||| |||| |||| ||||| |||
seq2  AATATCATAA--CCCAATGGCGATGTTTAT-ATGT-ATCAGGTTTATTTA  996

seq1  GTTTCTACATGCCAATAACATGTCAAGCTATGGAAGAATCACCTTCTTAG  1038
      | |||||||||||||| ||||||||||||||||| ||||| |||||||||
seq2  G-TTCTACATGCCAAT-ACATGTCAAGCTATGGAGGAATC-CCTTCTTAG  1043

seq1  AACCACGTCCTGCTAACATGAAATGTGGCACAGTGTTTCCCTCCCCCCCC  1088
       ||||||| |||||||||||  ||||||||||||| ||  ||||||||||
seq2  -ACCACGTTCTGCTAACATG--ATGTGGCACAGTGGTT--CTCCCCCCCC  1088

seq1  CCCCTCT  1095
      || ||  
seq2  CCTCT--  1093