BAC Information

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BAC

Clone NameB6Ng01-006A19
Chromosome11 (Build37)
Map Location 88,519,050 - 88,682,501
singlet/doubletdoublet
Overlap geneLOC100038945
Upstream geneRnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2
Downstream geneAkap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006A19.bB6Ng01-006A19.g
ACCDH843016DH843017
length4071,066
definitionDH843016|Mus musculus domesticus DNA, BAC clone: B6Ng01-006A19, 5' end.DH843017|Mus musculus domesticus DNA, BAC clone: B6Ng01-006A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,682,095 - 88,682,501)(88,519,050 - 88,520,126)
sequence
gaattctcactcttccacttatcaagtcagcatcgcgcgcctgcctgtct
ccgccactgtcaacatccgcgctcccaagtctccagcagcctgagctcag
ggccgcccctctctctctggcaattacgattccttccctggctcacgtcg
gaagtctttgttcttctccctgaacattcaagttaatttctactgactgt
ttattcagcctttgtactggctggcttgctacttagtcaggaaacgaggc
cctccgaggcaaaagcacggggatgcgtggggactcagagcaacagttta
ggacaggaagtaagacacttcagaggaggagggcgctagacaggaattcc
cagggccatgggaccaggactgggatcatgatcttagggaggggagtggg
aagggaa
gaattcaaacaacatccctccctcccagcaatgagacctaagatagctcc
tgaagcagcaggtgcctggacctcagggcccaatgagtgtcttcctgcag
gaccactacatgaatgacaaatggaagtgcataaggtgttaagaacagag
cctggtaatcaacgcatgcctaataacactaataagcattggggacaatt
atcctttcacccaggacactcttagggctattcgttcttacgttaccagt
tgctcctgaagacactaaggaaatataaatcattgctcaagacatggtcc
accagtccttactaggaatgcgaagatgccaacttgaacaggcagtctag
aattctttatccaaggcttgcattttggaggtttctgatttcggacaggc
aacaagatgtgtgcatcgtattctacagcacccacctccctgctctgcct
gcttctactcaaagacattagaagtttttcagaaaaatccatgtaccctc
atagtcagcaggatggagacgccatatagtctgaggacaggcaggtcaga
ttctgtagcccacggagttatagaaaagctgaggccgtgacacgctagac
ctgtagccacggggtaacacggaggcaggaactgtagaaagggggactag
gcaagtaactagggtaagactaaggacaggctcagttaacacctgaagaa
gaaacaagagcctcctgagagaaaggctctctctggcagaggctgcagca
gatgcaaaggagaaccttctagaacggcatcaaccataatggacacccaa
gaggccatgcaaggcaacaagaaggctgacaaatgaggctagggtcagag
tctggtgactgagaccatactaaaggacctccccttaaactgtggctcaa
ccagtactttaaaaaaagaatatgatagccgggtgtggtgcgcacgtctt
tagtccagcactcgggagcagaggcagcgatttctgagttcgaggccagc
tgtctacaaaagtgagttcagacagtcagggctaccgaagaaacactgtc
tcgaaatccaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88682095_88682501
seq2: B6Ng01-006A19.b_40_446 (reverse)

seq1  TTCCCTTCCCACTCCCCTCCCTAAGATCATGATCCCAGTCCTGGTCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCCCACTCCCCTCCCTAAGATCATGATCCCAGTCCTGGTCCCAT  50

seq1  GGCCCTGGGAATTCCTGTCTAGCGCCCTCCTCCTCTGAAGTGTCTTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGGAATTCCTGTCTAGCGCCCTCCTCCTCTGAAGTGTCTTACTT  100

seq1  CCTGTCCTAAACTGTTGCTCTGAGTCCCCACGCATCCCCGTGCTTTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTAAACTGTTGCTCTGAGTCCCCACGCATCCCCGTGCTTTTGCC  150

seq1  TCGGAGGGCCTCGTTTCCTGACTAAGTAGCAAGCCAGCCAGTACAAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGGGCCTCGTTTCCTGACTAAGTAGCAAGCCAGCCAGTACAAAGGC  200

seq1  TGAATAAACAGTCAGTAGAAATTAACTTGAATGTTCAGGGAGAAGAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAACAGTCAGTAGAAATTAACTTGAATGTTCAGGGAGAAGAACAA  250

seq1  AGACTTCCGACGTGAGCCAGGGAAGGAATCGTAATTGCCAGAGAGAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCCGACGTGAGCCAGGGAAGGAATCGTAATTGCCAGAGAGAGAGG  300

seq1  GGCGGCCCTGAGCTCAGGCTGCTGGAGACTTGGGAGCGCGGATGTTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCCCTGAGCTCAGGCTGCTGGAGACTTGGGAGCGCGGATGTTGACA  350

seq1  GTGGCGGAGACAGGCAGGCGCGCGATGCTGACTTGATAAGTGGAAGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGGAGACAGGCAGGCGCGCGATGCTGACTTGATAAGTGGAAGAGTG  400

seq1  AGAATTC  407
      |||||||
seq2  AGAATTC  407

seq1: chr11_88519050_88520126
seq2: B6Ng01-006A19.g_65_1130

seq1  GAATTCAAACAACATCCCTCCCTCCCAGCAATGAGACCTAAGATAGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAACATCCCTCCCTCCCAGCAATGAGACCTAAGATAGCTCC  50

seq1  TGAAGCAGCAGGTGCCTGGACCTCAGGGCCCAATGAGTGTCTTCCTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGCAGGTGCCTGGACCTCAGGGCCCAATGAGTGTCTTCCTGCAG  100

seq1  GACCACTACATGAATGACAAATGGAAGTGCATAAGGTGTTAAGAACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTACATGAATGACAAATGGAAGTGCATAAGGTGTTAAGAACAGAG  150

seq1  CCTGGTAATCAACGCATGCCTAATAACACTAATAAGCATTGGGGACAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAATCAACGCATGCCTAATAACACTAATAAGCATTGGGGACAATT  200

seq1  ATCCTTTCACCCAGGACACTCTTAGGGCTATTCGTTCTTACGTTACCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTCACCCAGGACACTCTTAGGGCTATTCGTTCTTACGTTACCAGT  250

seq1  TGCTCCTGAAGACACTAAGGAAATATAAATCATTGCTCAAGACATGGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGAAGACACTAAGGAAATATAAATCATTGCTCAAGACATGGTCC  300

seq1  ACCAGTCCTTACTAGGAATGCGAAGATGCCAACTTGAACAGGCAGTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCCTTACTAGGAATGCGAAGATGCCAACTTGAACAGGCAGTCTAG  350

seq1  AATTCTTTATCCAAGGCTTGCATTTTGGAGGTTTCTGATTTCGGACAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTATCCAAGGCTTGCATTTTGGAGGTTTCTGATTTCGGACAGGC  400

seq1  AACAAGATGTGTGCATCGTATTCTACAGCACCCACCTCCCTGCTCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATGTGTGCATCGTATTCTACAGCACCCACCTCCCTGCTCTGCCT  450

seq1  GCTTCTACTCAAAGACATTAGAAGTTTTTCAGAAAAATCCATGTACCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTACTCAAAGACATTAGAAGTTTTTCAGAAAAATCCATGTACCCTC  500

seq1  ATAGTCAGCAGGATGGAGACGCCATATAGTCTGAGGACAGGCAGGTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAGCAGGATGGAGACGCCATATAGTCTGAGGACAGGCAGGTCAGA  550

seq1  TTCTGTAGCCCACGGAGTTATAGAAAAGCTGAGGCCGTGACACGCTAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGCCCACGGAGTTATAGAAAAGCTGAGGCCGTGACACGCTAGAC  600

seq1  CTGTAGCCACGGGGTAACACGGAGGCAGGAACTGTAGAAAGGGGGACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCCACGGGGTAACACGGAGGCAGGAACTGTAGAAAGGGGGACTAG  650

seq1  GCAAGTAACTAGGGTAAGACTAAGGACAGGCTCAGTTAACACCTGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAACTAGGGTAAGACTAAGGACAGGCTCAGTTAACACCTGAAGAA  700

seq1  GAAACAAGAGCCTCCTGAGAGAAAGGCTCTCTCTGGCAGAGGCTGCAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGAGCCTCCTGAGAGAAAGGCTCTCTCTGGCAGAGGCTGCAGCA  750

seq1  GATGCAAAGGAGAACCTTCTAGAACGGCATCAACCATAATGGACACCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAAGGAGAACCTTCTAGAACGGCATCAACCATAATGGACACCCAA  800

seq1  GAGGCCATGCAAGGCAACAAGAAGGCTGACAAATGAGGCTAGGGTCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATGCAAGGCAACAAGAAGGCTGACAAATGAGGCTAGGGTCAGAG  850

seq1  TCTGGTGACTGAGACCATACTAAAGGACCTCCCCTTAAAACTGTGGCTCA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTGGTGACTGAGACCATACTAAAGGACCTCCCCTT-AAACTGTGGCTCA  899

seq1  ACCAGTACTTTAAAAAAAGAATATGATAGCCGGGTGTGGTGGCGCACGCC  950
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  ACCAGTACTTTAAAAAAAGAATATGATAGCCGGGTGTGGT-GCGCACGTC  948

seq1  TTTAGTCCCAGCACTCGGGAAGCAGAGGCAGGCGGATTTCTGAGTTCGAG  1000
      |||||| |||||||||||| |||||||||||   ||||||||||||||||
seq2  TTTAGT-CCAGCACTCGGG-AGCAGAGGCAG--CGATTTCTGAGTTCGAG  994

seq1  GCCAGCCTGGTCTAC-AAAGTGAGTTCCAGGACAGTCAGGGCTACACAGA  1049
      ||||||   |||||| |||||||||||   ||||||||||||||| |  |
seq2  GCCAGC--TGTCTACAAAAGTGAGTTC--AGACAGTCAGGGCTAC-CGAA  1039

seq1  GAAACACTGTCTCGAAAAACCAAAAAAA  1077
      |||||||||||||| ||| |||||||||
seq2  GAAACACTGTCTCG-AAATCCAAAAAAA  1066