BAC Information

Click to search

BAC

Clone NameB6Ng01-006H05
Chromosome13 (Build37)11 (Build37)
Map Location 80,840,011 - 80,840,50827,373,372 - 27,374,531
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006H05.bB6Ng01-006H05.g
ACCDH843305DH843306
length1,0391,157
definitionDH843305|Mus musculus domesticus DNA, BAC clone: B6Ng01-006H05, 5' end.DH843306|Mus musculus domesticus DNA, BAC clone: B6Ng01-006H05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,840,011 - 80,840,508)(27,373,372 - 27,374,531)
sequence
gaattctcgatttaacctattttaaattgttttattttgcttgttggtat
ctaatttcttgagtttttatatattttggttattagtccgctgttgcatg
caagattagtgaagatcttttgcaaccctgtagactgcttgttttttcct
attgacacatgaattccatcttttactacttagaaatttattcttaaaaa
acaagatttagttatataattttaaaataatgtattattttaaattatat
attacttataatatataatatacttgtatattatacataataaattatat
gtacaatatgctgacatttatttgcaatatttaaataattcatatttaaa
cacattcattatataattgggttaatacttgctaactatcattcagtatt
ctaattattatatattttttcttttaaacattctctcctttttacattac
cttttatgacttcgtttgaggaatatctatgttttcagggtattttctac
atcaacattttaattatttttctatcaaaacccttttagtggttaggtat
tgaaagagtagtaaactcagtgctccaaggtatgctaattataaaacaga
tagtgacattcctccaccctcccacttcctgagttcaaggagtattcatt
caaagaaagtcaccctgaccattaccggaagctgcaatgcaaatgtgcta
ttgttaggggctcttagaaactgtcttgagagttaacaattaccaggtat
tccttgtgacacctgtgactttgtacttccttgtgactcttatctggtat
ttttggtattttccaacaacgcccttcccacctcattgagttgtggtttt
ttcctttaaatacccccttactcagctacttggggcgccatggtcctcta
cccctgtgtggtgtatgaccgtgggcccgagagcgctcttgatgaaatcc
tcttgcaatttgcagcagaccgtttcttgtgggtgattttggggtgttcg
cctctcctgagtcagacgtggggggagtctcacattgtg
gaattctagttctaaaggcatcttaagccttcatcttctgaaaatccctg
tagtcatataccttcttcatttatacaaaactaaatttttataccaatta
tttttaagcactggacaattagaaagatgatttgagggcttttctgcaat
cttcaaagtctttaaagagagaaaatttgtttctaagtctttgtagggaa
aagtcacttctgaagtgttgtggagtgccttgtatcatgatgcttggatt
tatttctccacactccatcaacagagcaccctatacattcaggatttcaa
gttcccacaggattccaagaaacctgtgtcagtgatgaccttgatactag
ttctgtagaatgcaagaattttcatgtgacattgtggtgttggagtctcc
gtaagaagactcttatggaacaatgagcagttaaggtatagaagtgacaa
cttgggaagacagtaggaaaatagaatgtggtgctcattcactaagcaat
gagccacattcaaagcctggtcaagggtgtaggcatgtgtgctacagtga
tgaggaacttaagagcccttaagagtctagagctctgctcaccataccta
caatactagaaatgggactttagaatttaatatttgccttgtcacttttc
accctctcgggtctgttttagctctttttctccatgctattcctctcttc
tgctattttgaatgtcattgttcctttgtgcctgccctaatgctgtatct
cagaaatgtgtatactattttctttattataggcttagagtttagtttgt
cttgagtcttagagattattcttttaatactgaaaagttggtttatggac
aggagaaatttattttgcattatgacagacatgaaccaatgggatcaagg
aagcaaatgttattcttgggatgagtatcaccaagctctatgttttagtc
ataatctctgaggtgatgtgttaatagtggacattcagagttgtgactga
ccttgtaagaattactaagattgctggagctatattcttcagatctatat
ttgagttcttggtctcatgtcctcaatttcttgttcatgaatatggatta
tctcctccatgaataagacatgccagatggagactcgtcaatgggtctgc
ctgatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_80840011_80840508
seq2: B6Ng01-006H05.b_591_1082

seq1  TATTGAAAGAGTAGTAAACTCAGTGCTCCAAGGTATGCTAATCATAAAAC  50
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATTGAAAGAGTAGTAAACTCAGTGCTCCAAGGTATGCTAATTATAAAAC  50

seq1  AGATAGTGACATTCCTCCACCCACCCACTTCCTGAGTTCAAGGAGTATTC  100
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGATAGTGACATTCCTCCACCCTCCCACTTCCTGAGTTCAAGGAGTATTC  100

seq1  ATTCAAAGAAAGTCACCCTGGCCATTACCGGAAGCTGCAATGCAAATGTG  150
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTCAAAGAAAGTCACCCTGACCATTACCGGAAGCTGCAATGCAAATGTG  150

seq1  CTATTGTTAGGGGCTCTTAGAAACTGTCTTGAGAGTTAACAATTACCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTTAGGGGCTCTTAGAAACTGTCTTGAGAGTTAACAATTACCAGG  200

seq1  TATTCCTTGTGACACCTGTGACTTTGTACTTCCTTGTGACTCTTATCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTGTGACACCTGTGACTTTGTACTTCCTTGTGACTCTTATCTGG  250

seq1  TATTTTTTGGTATTTTCCAACAACGCCCTTCCCACCTCCTTGAGTTGTGG  300
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TA-TTTTTGGTATTTTCCAACAACGCCCTTCCCACCTCATTGAGTTGTGG  299

seq1  TTTTTCTCCTTTAAATACCCCCTTACTCAGCTACTCGGGGCGCCACAGTC  350
      ||||| ||||||||||||||||||||||||||||| |||||||||  |||
seq2  TTTTT-TCCTTTAAATACCCCCTTACTCAGCTACTTGGGGCGCCATGGTC  348

seq1  CTCTACCCCTGCGTGGTGTATGACCGTGGGCCCGAGAGCGCTCTTGAATA  400
      ||||||||||| |||||||||||||||||||||||||||||||||||   
seq2  CTCTACCCCTGTGTGGTGTATGACCGTGGGCCCGAGAGCGCTCTTGA--T  396

seq1  AAAATCCTCTTGCAATTTGCAACAAGACCGTTTTCTCGTTGGTGATTTTG  450
       |||||||||||||||||||| | |||||| ||||| || ||||||||||
seq2  GAAATCCTCTTGCAATTTGCAGC-AGACCG-TTTCTTGTGGGTGATTTTG  444

seq1  GGGTG-TCGCCTCTCCTGAGTCAGAACGT-GGGGGAGTCCTCACGTTGTG  498
      ||||| |||||||||||||||||| |||| |||||||| ||||| |||||
seq2  GGGTGTTCGCCTCTCCTGAGTCAG-ACGTGGGGGGAGT-CTCACATTGTG  492

seq1: chr11_27373372_27374531
seq2: B6Ng01-006H05.g_65_1221

seq1  GAATTCTAGTTCTAAAGGCATCTTAAGCCTTCATCTTCTGAAAATCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTTCTAAAGGCATCTTAAGCCTTCATCTTCTGAAAATCCCTG  50

seq1  TAGTCATATACCTTCTTCATTTATACAAAACTAAATTTTTATACCAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATATACCTTCTTCATTTATACAAAACTAAATTTTTATACCAATTA  100

seq1  TTTTTAAGCACTGGACAATTAGAAAGATGATTTGAGGGCTTTTCTGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGCACTGGACAATTAGAAAGATGATTTGAGGGCTTTTCTGCAAT  150

seq1  CTTCAAAGTCTTTAAAGAGAGAAAATTTGTTTCTAAGTCTTTGTAGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGTCTTTAAAGAGAGAAAATTTGTTTCTAAGTCTTTGTAGGGAA  200

seq1  AAGTCACTTCTGAAGTGTTGTGGAGTGCCTTGTATCATGATGCTTGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTTCTGAAGTGTTGTGGAGTGCCTTGTATCATGATGCTTGGATT  250

seq1  TATTTCTCCACACTCCATCAACAGAGCACCCTATACATTCAGGATTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCCACACTCCATCAACAGAGCACCCTATACATTCAGGATTTCAA  300

seq1  GTTCCCACAGGATTCCAAGAAACCTGTGTCAGTGATGACCTTGATACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCACAGGATTCCAAGAAACCTGTGTCAGTGATGACCTTGATACTAG  350

seq1  TTCTGTAGAATGCAAGAATTTTCATGTGACATTGTGGTGTTGGAGTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGAATGCAAGAATTTTCATGTGACATTGTGGTGTTGGAGTCTCC  400

seq1  GTAAGAAGACTCTTATGGAACAATGAGCAGTTAAGGTATAGAAGTGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGACTCTTATGGAACAATGAGCAGTTAAGGTATAGAAGTGACAA  450

seq1  CTTGGGAAGACAGTAGGAAAATAGAATGTGGTGCTCATTCACTAAGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAAGACAGTAGGAAAATAGAATGTGGTGCTCATTCACTAAGCAAT  500

seq1  GAGCCACATTCAAAGCCTGGTCAAGGGTGTAGGCATGTGTGCTACAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACATTCAAAGCCTGGTCAAGGGTGTAGGCATGTGTGCTACAGTGA  550

seq1  TGAGGAACTTAAGAGCCCTTAAGAGTCTAGAGCTCTGCTCACCATACCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAACTTAAGAGCCCTTAAGAGTCTAGAGCTCTGCTCACCATACCTA  600

seq1  CAATACTAGAAATGGGACTTTAGAATTTAATATTTGCCTTGTCACTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTAGAAATGGGACTTTAGAATTTAATATTTGCCTTGTCACTTTTC  650

seq1  ACCCTCTCGGGTCTGTTTTAGCTCTTTTTCTCCATGCTATTCCTCTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTCGGGTCTGTTTTAGCTCTTTTTCTCCATGCTATTCCTCTCTTC  700

seq1  TGCTATTTTGAATGTCATTGTTCCTTTGTGCCTGCCCTAATGCTGTATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTTGAATGTCATTGTTCCTTTGTGCCTGCCCTAATGCTGTATCT  750

seq1  CAGAAATGTGTATACTATTTTCTTTATTATAGGCTTAGAGTTTAGTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGTGTATACTATTTTCTTTATTATAGGCTTAGAGTTTAGTTTGT  800

seq1  CTTGAGTCTTAGAGATTATTCTTTTAATACTGAAAAGTTGGTTTATGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTCTTAGAGATTATTCTTTTAATACTGAAAAGTTGGTTTATGGAC  850

seq1  AGGAGAAATTTATTTTGCATTATGACAGACATGAACCAATGGGATCAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAATTTATTTTGCATTATGACAGACATGAACCAATGGGATCAAGG  900

seq1  AAGCAAATGTTATTCTTGGGATGAGTATCACCAAAGCTCTATGTTTTAAG  950
      |||||||||||||||||||||||||||||||| |||||||||||||| ||
seq2  AAGCAAATGTTATTCTTGGGATGAGTATCACC-AAGCTCTATGTTTT-AG  948

seq1  TCATAATCTCTGAGGTGATGTGTTAATAGTGGACAATTCAGGAGTTGTGA  1000
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  TCATAATCTCTGAGGTGATGTGTTAATAGTGGAC-ATTCA-GAGTTGTGA  996

seq1  CTGACCTTGTAAGAATTACTAAGATTGCTGGAGCTATA-TCTTCAGATC-  1048
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  CTGACCTTGTAAGAATTACTAAGATTGCTGGAGCTATATTCTTCAGATCT  1046

seq1  ATATTGTAGTTCTTGGGTCTCAATGT-CTCAATTTCTTGTTTCATG-ATA  1096
      |||||  ||||||| |||||| |||| |||||||||||| |||||| |||
seq2  ATATTTGAGTTCTT-GGTCTC-ATGTCCTCAATTTCTTG-TTCATGAATA  1093

seq1  T-GATTATCTCTTCCATG-ATATGACATGCCAGTTGGAGTCTCAAATCAA  1144
      | ||||||||| |||||| ||| |||||||||| ||||| |||   ||||
seq2  TGGATTATCTCCTCCATGAATAAGACATGCCAGATGGAGACTC--GTCAA  1141

seq1  TGGGTCTGCCTGATAC  1160
      ||||||||||||||||
seq2  TGGGTCTGCCTGATAC  1157