BAC Information

Click to search

BAC

Clone NameB6Ng01-006H12
Chromosome11 (Build37)
Map Location 8,003,702 - 8,146,334
singlet/doubletdoublet
Overlap genenone
Upstream geneAdcy1, LOC100041347, Igfbp1, Igfbp3
Downstream geneLOC665380, Tns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006H12.bB6Ng01-006H12.g
ACCDH843319DH843320
length1,137655
definitionDH843319|Mus musculus domesticus DNA, BAC clone: B6Ng01-006H12, 5' end.DH843320|Mus musculus domesticus DNA, BAC clone: B6Ng01-006H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,003,702 - 8,004,844)(8,145,679 - 8,146,334)
sequence
gaattcctctagctactctccattcattctcacatgcattcattatttaa
gttgatcttcttgaatgcacactgtaagatgcttcccgcaccagagaggc
taaaagaggaataggtccccatcttgggacacaccaaagcaacatctagc
caatgtttaaagctggccacactgagggtgatgctaatgatgatgtggaa
agatcacactgagagatacagagatgggcataaaggagagagaagagaaa
gagagacagagacacagacagagacacggagagagacagagagacttaga
gagacaaagagaggcagagagatagagagaggcagaatgaaacctggaag
ctcagcctctcagtccagacccagacatcagacactggagtgaagaaacc
ttaaattccacatctaatacaaaagccccaaaccctacatgagtactatc
atctaagtctatgtaactccagattctaaaggaagctattagcatcaggc
tttgagttgcagcatctagtctccatggcacctattctagatagccagag
tggttgagagaaatggaatgtatgttaccagaggtagcagctgaatggag
aggtggcaggtctctttcaataaggatttgaagacaggaagatgattctg
gaaactaaagacaatggcactgttctgtagaagtcatcaatatggccata
aaatgcagaaaagaacaaatgccatagcaacacaaggtgaactgagatta
gttagagtagtaattggtgtattttagtcaagtgtatcataaaatgagca
taggagatgagcagagttcagtgtttatccaagttacagagggcttgaag
aatccactagattctctttctctctcctgcaaccagagaagcgtctactc
agagttcagtacatgcctagattacatggagactgaacagagagaaagag
aattgtgatcctggcacagacttacgaggtatatgggatagtcttgtaac
cagacacaaaagctaaagtcatcagagagcatgaacatcagctagatgct
gctgtaggcagcctatgtagccatttcttgactacgtgatcaatgtgaga
ggtctagccatgtgtgtgatagtcaccacctgggctg

gaattcacttctcctggatcaaacactgtctctcgtcatcccatacagtc
catcaatggtgccgccactcttcagatgagaaagacttcggagctgagat
tccaaatgcagccccaagttagccccacattctttaagaaaatgatgtta
ctggggaagccatatgggagaactcaggatcagagggaagcagaggtgct
ggaaagcactggatatctccagggccacacctgagagttagtgtgtgaga
agcagccgtcccaaggggcaaattcgtgacttgggggggggggttaagtc
ctcttttgttttcttgttatttatgtaccttcgtggctaacataaccaga
cacaaagttagatgcaaaatgtcttatttatatatatatataattattat
tatttactagaaaagggttgcttaaatttttgaaattctgaactattcaa
tagctgaaatagggttagcacctgagagtctatctgcactgtacggtgct
gcctgagtgtggagtctccttctgcaacttggaaataagggacggaggca
ggtagggaatgattgaaggtcttagattggttgccaatgtgtgtcctgac
cctaaaatatagcaatcagggtaaaacttctctccattttatgtgttctg
aaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_8003702_8004844
seq2: B6Ng01-006H12.b_46_1182

seq1  GAATTCCTCTAGCTACTCTCCATTCATTCTCACATGCATTCATTATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTAGCTACTCTCCATTCATTCTCACATGCATTCATTATTTAA  50

seq1  GTTGATCTTCTTGAATGCACACTGTAAGATGCTTCCCGCACCAGAGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATCTTCTTGAATGCACACTGTAAGATGCTTCCCGCACCAGAGAGGC  100

seq1  TAAAAGAGGAATAGGTCCCCATCTTGGGACACACCAAAGCAACATCTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGGAATAGGTCCCCATCTTGGGACACACCAAAGCAACATCTAGC  150

seq1  CAATGTTTAAAGCTGGCCACACTGAGGGTGATGCTAATGATGATGTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTAAAGCTGGCCACACTGAGGGTGATGCTAATGATGATGTGGAA  200

seq1  AGATCACACTGAGAGATACAGAGATGGGCATAAAGGAGAGAGAAGAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACACTGAGAGATACAGAGATGGGCATAAAGGAGAGAGAAGAGAAA  250

seq1  GAGAGACAGAGACACAGACAGAGACACGGAGAGAGACAGAGAGACTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGAGACACAGACAGAGACACGGAGAGAGACAGAGAGACTTAGA  300

seq1  GAGACAAAGAGAGGCAGAGAGATAGAGAGAGGCAGAATGAAACCTGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAGAGAGGCAGAGAGATAGAGAGAGGCAGAATGAAACCTGGAAG  350

seq1  CTCAGCCTCTCAGTCCAGACCCAGACATCAGACACTGGAGTGAAGAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTCTCAGTCCAGACCCAGACATCAGACACTGGAGTGAAGAAACC  400

seq1  TTAAATTCCACATCTAATACAAAAGCCCCAAACCCTACATGAGTACTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTCCACATCTAATACAAAAGCCCCAAACCCTACATGAGTACTATC  450

seq1  ATCTAAGTCTATGTAACTCCAGATTCTAAAGGAAGCTATTAGCATCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGTCTATGTAACTCCAGATTCTAAAGGAAGCTATTAGCATCAGGC  500

seq1  TTTGAGTTGCAGCATCTAGTCTCCATGGCACCTATTCTAGATAGCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTGCAGCATCTAGTCTCCATGGCACCTATTCTAGATAGCCAGAG  550

seq1  TGGTTGAGAGAAATGGAATGTATGTTACCAGAGGTAGCAGCTGAATGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAGAGAAATGGAATGTATGTTACCAGAGGTAGCAGCTGAATGGAG  600

seq1  AGGTGGCAGGTCTCTTTCAATAAGGATTTGAAGACAGGAAGATGATTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCAGGTCTCTTTCAATAAGGATTTGAAGACAGGAAGATGATTCTG  650

seq1  GAAACTAAAGACAATGGCACTGTTCTGTAGAAGTCATCAATATGGCCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAAAGACAATGGCACTGTTCTGTAGAAGTCATCAATATGGCCATA  700

seq1  AAATGCAGAAAAGAACAAATGCCATAGCAACACAAGGTGAACTGAGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGAAAAGAACAAATGCCATAGCAACACAAGGTGAACTGAGATTA  750

seq1  GTTAGAGTAGTAATTGGTGTATTTTAGTCAAGTGTATCATAAAATGAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGTAGTAATTGGTGTATTTTAGTCAAGTGTATCATAAAATGAGCA  800

seq1  TAGGAGATGAGCAGAGTTCAGTGTTTATCCAAGTTACAGAGGGCTTGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGATGAGCAGAGTTCAGTGTTTATCCAAGTTACAGAGGGCTTGAAG  850

seq1  AATCCACTAGATTCTCTTTCTCTCTCCTGCAACCAGAGAAGCGTCTACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACTAGATTCTCTTTCTCTCTCCTGCAACCAGAGAAGCGTCTACTC  900

seq1  AGAGTTCAGTACATGCCTAGATTACATGGAGACTGAACAGAGAGAAAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCAGTACATGCCTAGATTACATGGAGACTGAACAGAGAGAAAGAG  950

seq1  AATTGTGATCCTGGCACAAGACTTAGGAGGTATATGGGATAGTCTTGTAA  1000
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  AATTGTGATCCTGGCAC-AGACTTACGAGGTATATGGGATAGTCTTGTAA  999

seq1  ACAAGGACACAAAAGCTAAAGTCATCAGAGAGCAAGGAACATCAGCTAAG  1050
       ||  |||||||||||||||||||||||||||| | ||||||||||| ||
seq2  CCA--GACACAAAAGCTAAAGTCATCAGAGAGC-ATGAACATCAGCT-AG  1045

seq1  ATGCTGCTGTAGGCAGGCCTATGTAGCATTTTCTTAATTA-GTGATCAAT  1099
      ||||||||||||||| |||||||||||  |||||| | || |||||||||
seq2  ATGCTGCTGTAGGCA-GCCTATGTAGCCATTTCTTGACTACGTGATCAAT  1094

seq1  GTGGAAGGGTCTAGCCCATTGTGTGTGAT-GCCACC-CCTGGGCTG  1143
      || ||  |||||||||   |||||||||| | |||| |||||||||
seq2  GT-GAGAGGTCTAGCC--ATGTGTGTGATAGTCACCACCTGGGCTG  1137


seq1: chr11_8145679_8146334
seq2: B6Ng01-006H12.g_66_720 (reverse)

seq1  GATTTCAGAACACATAAAATGGAGAGAAGTTTTACCCTGATTGCTATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGAACACATAAAATGGAGAGAAGTTTTACCCTGATTGCTATATT  50

seq1  TTAGGGTCAGGACACACATTGGCAACCAATCTAAGACCTTCAATCATCTC  100
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  TTAGGGTCAGGACACACATTGGCAACCAATCTAAGACCTTCAATCATTCC  100

seq1  AAAGCCCCCAGTGAACCTTATGCTCAAGTTGCAGAATGAGACTCCACACT  150
        | |  ||   |  ||||||   |||||||||||| |||||||||||||
seq2  CTACCTGCCTCCGTCCCTTATTTCCAAGTTGCAGAAGGAGACTCCACACT  150

seq1  CAGACAGCACCATCTAGTGGTGATAGAATGTCATGTGCTAACCCTTTCTC  200
      ||| ||||||| |  ||||  |||||| | ||| ||||||||||| | ||
seq2  CAGGCAGCACCGTACAGTGCAGATAGACTCTCAGGTGCTAACCCTATTTC  200

seq1  CTGTATTTAAAAGTTTGGAATTTTAAAAATTTAAGAAATACTTTTCTAGT  250
         |||| || ||||  |||||| ||||||||||| ||  ||||||||||
seq2  AGCTATTGAATAGTTCAGAATTTCAAAAATTTAAGCAACCCTTTTCTAGT  250

seq1  AAATAATAATAATTATATATATATATTAAATAAGACATTTTGCATCTAAC  300
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAATAATAATAATTATATATATATA-TAAATAAGACATTTTGCATCTAAC  299

seq1  TTTGTGTCTGGCTATGTTAGCCACGAAGGTACATAAATAACAAGAAAACA  350
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTCTGGTTATGTTAGCCACGAAGGTACATAAATAACAAGAAAACA  349

seq1  AATGAGGACTTAACCCCCCCCCCCAAGTCACGAATTTGCCCCTTGGGACG  400
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGACTTAACCCCCCCCCCCAAGTCACGAATTTGCCCCTTGGGACG  399

seq1  GCTGCTTCTCACACACTAACTCTCAGGTGTGGCCCTGGAGATATCCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTCTCACACACTAACTCTCAGGTGTGGCCCTGGAGATATCCAGTG  449

seq1  CTTTCCAGCACCTCTGCTTCCCTCTGATCCTGAGTTCTCCCATATGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGCACCTCTGCTTCCCTCTGATCCTGAGTTCTCCCATATGGCTT  499

seq1  CCCCAGTAACATCATTTTCTTAAAGAATGTGGGGCTAACTTGGGGCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTAACATCATTTTCTTAAAGAATGTGGGGCTAACTTGGGGCTGCA  549

seq1  TTTGGAATCTCAGCTCCGAAGTCTTTCTCATCTGAAGAGTGGCGGCACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATCTCAGCTCCGAAGTCTTTCTCATCTGAAGAGTGGCGGCACCA  599

seq1  TTGATGGACTGTATGGGATGACGAGAGACAGTGTTTGATCCAGGAGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGACTGTATGGGATGACGAGAGACAGTGTTTGATCCAGGAGAAGT  649

seq1  GAATTC  656
      ||||||
seq2  GAATTC  655


| Home | SequenceCutter | Blast | Download |