BAC Information

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BAC

Clone NameB6Ng01-006I16
Chromosome11 (Build37)
Map Location 40,012,513 - 40,119,412
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006I16.bB6Ng01-006I16.g
ACCDH843370DH843371
length4851,022
definitionDH843370|Mus musculus domesticus DNA, BAC clone: B6Ng01-006I16, 5' end.DH843371|Mus musculus domesticus DNA, BAC clone: B6Ng01-006I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,012,513 - 40,013,003)(40,118,380 - 40,119,412)
sequence
actgagactctgacaacattaacagaggtcacacaggtccaaagcaatag
ggtccccaggagcaaatgggcatcagtgtccatccctagccaaaaagtta
tctcctagtgatagtcatctaaagaaaaaattccttttcttcagtttagt
ctcgctgggtgtataaaccacactaaatgacaggcttcatggccagcagg
agatggctaacacaaaacaaactcaaagggtttttttggagatatttttg
tatcctattgcttagcttaaaatgtttatttttttaactttcttggtctt
ttacttgtatatgatcatttttgatattgtgtttttataggtttggggtg
tgtgtatgtgtatagatgcacatgcatggacacacgcacactttatatgc
tttctctacttcatttatgcctgcttgctttctaaacaaataaagaatgc
atggagtgtaataggtgggagatgaggatgatctg
gaattcagcatccattcactgaggcagacataacgctgaacccgactatg
attaggaagttgagtacctcagcagcttatatggggacaaaggttatagc
tgatgggtaaatgcccctaggagctattgactagtgttgccttcagaatt
caggattgtgatttgctagaaatagttttcttatcctttgcaagaggata
gtaaatcactttctggatctttctcatttataagttccaatcttctgcct
aagtgtttctcaacacccatgtgaaagtgacaaattgagcaactgttctc
agatggcaatgagattgtggtagaaaaatcactggtctaggagttagaag
actttttgtacattccttcgttctatcttttttggtgactttgggaaact
catttggggaattctgacctttcacgttaatgtttcctagaaggtattgt
gtgatcaagagagaagatgttaagttggttaaagaattatttctaaagaa
tatataatgctagataaatataggtgttactcctgtgttataatgattat
tcttttacctatgggtagttatgcacagatcatgtctttggagagatacg
ggtactagtgttgttgttggagggagaaataaataatatactaaataaaa
agatttaaacctttctatagtggaatttactatgcatgtaactaactatt
ctgtattgtttagtattttatgaactgtgtatactgttttgttttagaaa
tgtgattttctagtggatgttcatagtagaaaggacacacaataaaaaat
gattttgaggtggggctttagagatggctcagctgttagagaactttata
gtctttttagagaacctgaattcagttcccagctcccgactgtctgtata
ccaccgtcagagtgtgctcttttctggacttacggacatttatcacatgt
gcacatgtcttttctcacagaaatacttaactatttactattttgatatt
atgtttatcacaataatttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40012513_40013003
seq2: B6Ng01-006I16.b_47_537

seq1  GAATTCACTGAGACTCTGACAACATTAACAGAGGTCACACAGGTCCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAGACTCTGACAACATTAACAGAGGTCACACAGGTCCAAAG  50

seq1  CAATAGGGTCCCCAGGAGCAAATGGGCATCAGTGTCCATCCCTAGCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGGTCCCCAGGAGCAAATGGGCATCAGTGTCCATCCCTAGCCAAA  100

seq1  AAGTTATCTCCTAGTGATAGTCATCTAAAGAAAAAATTCCTTTTCTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATCTCCTAGTGATAGTCATCTAAAGAAAAAATTCCTTTTCTTCAG  150

seq1  TTTAGTCTCGCTGGGTGTATAAACCACACTAAATGACAGGCTTCATGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCTCGCTGGGTGTATAAACCACACTAAATGACAGGCTTCATGGCC  200

seq1  AGCAGGAGATGGCTAACACAAAACAAACTCAAAGGGTTTTTTTGGAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGATGGCTAACACAAAACAAACTCAAAGGGTTTTTTTGGAGATA  250

seq1  TTTTTGTATCCTATTGCTTAGCTTAAAATGTTTATTTTTTTAACTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTATCCTATTGCTTAGCTTAAAATGTTTATTTTTTTAACTTTCTT  300

seq1  GGTCTTTTACTTGTATATGATCATTTTTGATATTGTGTTTTTATAGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTTACTTGTATATGATCATTTTTGATATTGTGTTTTTATAGGTTT  350

seq1  GGGGTGTGTGTATGTGTATAGATGCACATGCATGGACACACGCACACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTGTGTATGTGTATAGATGCACATGCATGGACACACGCACACTTT  400

seq1  ATATGCTTTCTCTACTTCATTTATGCCTGCTTGCTTTCTAAACAAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTTCTCTACTTCATTTATGCCTGCTTGCTTTCTAAACAAATAAA  450

seq1  GAATGCATGGAGTGTAATAGGTGGGAGATGAGGAGGATCTG  491
      |||||||||||||||||||||||||||||||||| ||||||
seq2  GAATGCATGGAGTGTAATAGGTGGGAGATGAGGATGATCTG  491

seq1: chr11_40118380_40119412
seq2: B6Ng01-006I16.g_66_1087 (reverse)

seq1  GAGAAAATATTGTGATTAAAACATAATATCAAAAATAAGTAAATTAGGTT  50
      |||||| |||||||||  ||||||||||||||||   |||||||   |||
seq2  GAGAAATTATTGTGAT--AAACATAATATCAAAA--TAGTAAAT--AGTT  44

seq1  AGGTATTTCTGTGAAGAAAAGACATGTGCACATGTGATAAAATGTCCGTT  100
      | ||||||||||| |||||||||||||||||||||||| ||||||||| |
seq2  AAGTATTTCTGTG-AGAAAAGACATGTGCACATGTGAT-AAATGTCCG-T  91

seq1  AAGTCCAGAAAAGAGCACACTCTGACGGTGGTATTACAGACAGTCGGGAG  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGTCCAGAAAAGAGCACACTCTGACGGTGGTA-TACAGACAGTCGGGAG  140

seq1  CTGGGAACTGAATTCAGGTTCTCTAAAAAGACTATAAAGTTCTCTTAACA  200
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGGGAACTGAATTCAGGTTCTCTAAAAAGACTATAAAGTTCTC-TAACA  189

seq1  GCTGAGCCATCTCTAAAGCCCCACCTCAAAATCATTTTTTATTGTGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCATCTCTAAAGCCCCACCTCAAAATCATTTTTTATTGTGTGTC  239

seq1  CTTTCTACTATGAACATCCACTAGAAAATCACATTTCTAAAACAAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACTATGAACATCCACTAGAAAATCACATTTCTAAAACAAAACAG  289

seq1  TATACACAGTTCATAAAATACTAAACAATACAGAATAGTTAGTTACATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACAGTTCATAAAATACTAAACAATACAGAATAGTTAGTTACATGC  339

seq1  ATAGTAAATTCCACTATAGAAAGGTTTAAATCTTTTTATTTAGTATATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAATTCCACTATAGAAAGGTTTAAATCTTTTTATTTAGTATATTA  389

seq1  TTTATTTCTCCCTCCAACAACAACACTAGTACCCGTATCTCTCCAAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTCCCTCCAACAACAACACTAGTACCCGTATCTCTCCAAAGAC  439

seq1  ATGATCTGTGCATAACTACCCATAGGTAAAAGAATAATCATTATAACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGTGCATAACTACCCATAGGTAAAAGAATAATCATTATAACACA  489

seq1  GGAGTAACACCTATATTTATCTAGCATTATATATTCTTTAGAAATAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAACACCTATATTTATCTAGCATTATATATTCTTTAGAAATAATTC  539

seq1  TTTAACCAACTTAACATCTTCTCTCTTGATCACACAATACCTTCTAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCAACTTAACATCTTCTCTCTTGATCACACAATACCTTCTAGGAA  589

seq1  ACATTAACGTGAAAGGTCAGAATTCCCCAAATGAGTTTCCCAAAGTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAACGTGAAAGGTCAGAATTCCCCAAATGAGTTTCCCAAAGTCACC  639

seq1  AAAAAAGATAGAACGAAGGAATGTACAAAAAGTCTTCTAACTCCTAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGATAGAACGAAGGAATGTACAAAAAGTCTTCTAACTCCTAGACC  689

seq1  AGTGATTTTTCTACCACAATCTCATTGCCATCTGAGAACAGTTGCTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTTTCTACCACAATCTCATTGCCATCTGAGAACAGTTGCTCAAT  739

seq1  TTGTCACTTTCACATGGGTGTTGAGAAACACTTAGGCAGAAGATTGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTTTCACATGGGTGTTGAGAAACACTTAGGCAGAAGATTGGAAC  789

seq1  TTATAAATGAGAAAGATCCAGAAAGTGATTTACTATCCTCTTGCAAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATGAGAAAGATCCAGAAAGTGATTTACTATCCTCTTGCAAAGGA  839

seq1  TAAGAAAACTATTTCTAGCAAATCACAATCCTGAATTCTGAAGGCAACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAACTATTTCTAGCAAATCACAATCCTGAATTCTGAAGGCAACAC  889

seq1  TAGTCAATAGCTCCTAGGGGCATTTACCCATCAGCTATAACCTTTGTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAATAGCTCCTAGGGGCATTTACCCATCAGCTATAACCTTTGTCCC  939

seq1  CATATAAGCTGCTGAGGTACTCAACTTCCTAATCATAGTCGGGTTCAGCG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAGCTGCTGAGGTACTCAACTTCCTAATCATAGTCGGGTTCAGCG  989

seq1  TTATGTCTGCCTCAGTGAATGGATGCTGAATTC  1033
      |||||||||||||||||||||||||||||||||
seq2  TTATGTCTGCCTCAGTGAATGGATGCTGAATTC  1022