BAC Information

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BAC

Clone NameB6Ng01-007F22
Chromosome11 (Build37)
Map Location 111,673,519 - 111,857,601
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041523, Kcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966, LOC629967
Downstream geneLOC100041589, LOC100043020, EG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007F22.bB6Ng01-007F22.g
ACCDH843961DH843962
length1,097756
definitionDH843961|Mus musculus domesticus DNA, BAC clone: B6Ng01-007F22, 5' end.DH843962|Mus musculus domesticus DNA, BAC clone: B6Ng01-007F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,673,519 - 111,674,622)(111,856,847 - 111,857,601)
sequence
gaattccattcactatctgttattaattggacatatttttctcccaggca
gaacactgatgtttgtttgtttgtttgtttattttgaactacatccatca
aaggaacagtgacattattaaaagggcacaaaaggatagttgagaggccg
tggttatatatgggaaggggttccagctttcgttagattccttcctggtg
tactgagccgctgcagtacttttcctgatgcatattgttggcagaaaccc
tgggcttcctaagtcatctggaagcctggctccatttgcttcaacctgcc
tgccacaagcgaacggaggcaaacaagtgctttctaaatgaagaacgaca
aaaattggcctcatccatcaggctggccattaacaaatgctgtcccccgg
ggcccatttacaaaattactgacaatacaaatcttggtcaggaaaaacaa
ctttataaggcacaattctttaagcttacagtctgcccacataaatctgt
ggctatacctggccttgaatatatgcacacaaaaacatctacatctttat
caagctcccctctcgtctctgcatttcatttccatagctgcaaacatctg
ctggaactgtaccagtctgggtttacttgagttatagcaaagattcaggt
gtttgttttccttttttttttccatttcaaaacattagaaatggaaaatg
tgcaccactaaattaatatttatgtaaatggattttctccatatagaacc
agtcaaggaaatcatttaagacttaaaatgtattccttagcatcaacaac
cacgcattcgcatactagatttacatatcataattattcatgagtattac
ttttcctgatttaccaaaagaattgttttaaatcagcttggactcatgaa
actgccatagaagttaggcctgatgacatttgttttaattcgtgaagaat
tggtttttagcaaatagagtgtagcaagagttcttacgacacacttagct
agatgtggtttttgactattaatttccaaagtatgacaagattgatctca
cacttgaaggtgacggaattcacggatctaccaatggttccactgat
gaattcaaagcactgtttattttccacacggccccttcgcaatcagtcat
caatctactgttttgcttaattaaggaagaaatgtttttaaagagactgg
aagtatggatggcagagtcatggaaaagccaggatggtaataggtttgaa
gtaaaagaagtacttttgcactctgaagcaacaaaatgcataattcctta
taagggtggatagtgataaatgagagaaaagatctggatattttaatcca
tctatcagattttcaaagtgtaaaggtcttgaaaatataagattaaactg
caaaattaaaatttaaactcattaatggctgcttattaaactatctcatt
atataccaattttattttcaatgacaccagtttatataattaaagagtgg
agcgaacactgtgtgctaattcttgaaattggctataatctcaagatgtc
ataagacttaaaatataagttggaagggaattatgtacataatccaagtt
gaagaaataaaaagaaaaatctaaacatcagccacagcctatatgaggaa
gagaaatcacaatgagaaaaatcagaatatatatatatatattcatgaaa
gagtgaccagttctgaaggggaagggatgcaaaggggggtatgcagaggg
gaaatgcatatgagactatagtcagagtatgtggggttacggtatagtta
ataaagattgtctttatgataatcatcaatcactgtgagtgtgtgtgcct
gtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_111673519_111674622
seq2: B6Ng01-007F22.b_41_1137

seq1  GAATTCCATTCACTATCTGTTATTAATTGGACATATTTTTCTCCCAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCACTATCTGTTATTAATTGGACATATTTTTCTCCCAGGCA  50

seq1  GAACACTGATGTTTGTTTGTTTGTTTGTTTATTTTGAACTACATCCATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTGATGTTTGTTTGTTTGTTTGTTTATTTTGAACTACATCCATCA  100

seq1  AAGGAACAGTGACATTATTAAAAGGGCACAAAAGGATAGTTGAGAGGCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACAGTGACATTATTAAAAGGGCACAAAAGGATAGTTGAGAGGCCG  150

seq1  TGGTTATATATGGGAAGGGGTTCCAGCTTTCGTTAGATTCCTTCCTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATATATGGGAAGGGGTTCCAGCTTTCGTTAGATTCCTTCCTGGTG  200

seq1  TACTGAGCCGCTGCAGTACTTTTCCTGATGCATATTGTTGGCAGAAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGCCGCTGCAGTACTTTTCCTGATGCATATTGTTGGCAGAAACCC  250

seq1  TGGGCTTCCTAAGTCATCTGGAAGCCTGGCTCCATTTGCTTCAACCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTCCTAAGTCATCTGGAAGCCTGGCTCCATTTGCTTCAACCTGCC  300

seq1  TGCCACAAGCGAACGGAGGCAAACAAGTGCTTTCTAAATGAAGAACGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAAGCGAACGGAGGCAAACAAGTGCTTTCTAAATGAAGAACGACA  350

seq1  AAAATTGGCCTCATCCATCAGGCTGGCCATTAACAAATGCTGTCCCCCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGCCTCATCCATCAGGCTGGCCATTAACAAATGCTGTCCCCCGG  400

seq1  GGCCCATTTACAAAATTACTGACAATACAAATCTTGGTCAGGAAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATTTACAAAATTACTGACAATACAAATCTTGGTCAGGAAAAACAA  450

seq1  CTTTATAAGGCACAATTCTTTAAGCTTACAGTCTGCCCACATAAATCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAAGGCACAATTCTTTAAGCTTACAGTCTGCCCACATAAATCTGT  500

seq1  GGCTATACCTGGCCTTGAATATATGCACACAAAAACATCTACATCTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATACCTGGCCTTGAATATATGCACACAAAAACATCTACATCTTTAT  550

seq1  CAAGCTCCCCTCTCGTCTCTGCATTTCATTTCCATAGCTGCAAACATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCCCCTCTCGTCTCTGCATTTCATTTCCATAGCTGCAAACATCTG  600

seq1  CTGGAACTGTACCAGTCTGGGTTTACTTGAGTTATAGCAAAGATTCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTGTACCAGTCTGGGTTTACTTGAGTTATAGCAAAGATTCAGGT  650

seq1  GTTTGTTTTCCTTTTTTTTTTCCATTTCAAAACATTAGAAATGGAAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTCCTTTTTTTTTTCCATTTCAAAACATTAGAAATGGAAAATG  700

seq1  TGCACCACTAAATTAATATTTATGTAAATGGATTTTCTCCATATAGAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCACTAAATTAATATTTATGTAAATGGATTTTCTCCATATAGAACC  750

seq1  AGTCAAGGAAATCATTTAAGACTTAAAATGTATTCCTTAGCATCAACAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGAAATCATTTAAGACTTAAAATGTATTCCTTAGCATCAACAAC  800

seq1  CACGCATTCGCATACTAGATTTACATATCATAATTATTCATGAGTATTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCATTCGCATACTAGATTTACATATCATAATTATTCATGAGTATTAC  850

seq1  TTTTCCTGATTTACCAAAAGAATTGTTTTAAATCAGCTTGGACTCATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGATTTACCAAAAGAATTGTTTTAAATCAGCTTGGACTCATGAA  900

seq1  ACTGCCATAGAAGTTAGGCCTGATGACATTTGTTTTAATTCGTGAAGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCATAGAAGTTAGGCCTGATGACATTTGTTTTAATTCGTGAAGAAT  950

seq1  TGGTTTTTAGCAAATAGAGTTGTAACAAGAGTTCTTACAGACACACTTAG  1000
      ||||||||||||||||||| |||| ||||||||||||| |||||||||||
seq2  TGGTTTTTAGCAAATAGAG-TGTAGCAAGAGTTCTTAC-GACACACTTAG  998

seq1  CTAGATGTGGTTTTTGACTATTAATTTCCAAAAGTAATGACAAGTATGAA  1050
      ||||||||||||||||||||||||||||| ||||| |||||||| ||  |
seq2  CTAGATGTGGTTTTTGACTATTAATTTCC-AAAGT-ATGACAAG-ATTGA  1045

seq1  TCTCACA-TTGAAGGTGACAGAGATTCACAGGATCTAACAAATTGTTCCA  1099
      ||||||| ||||||||||| || |||||| |||||| || ||| ||||||
seq2  TCTCACACTTGAAGGTGACGGA-ATTCAC-GGATCT-ACCAATGGTTCCA  1092

seq1  CTGAT  1104
      |||||
seq2  CTGAT  1097

seq1: chr11_111856847_111857601
seq2: B6Ng01-007F22.g_67_822 (reverse)

seq1  ACACACA--CACACACACACACAGTGATTGATGATTATCATAAAGACAAT  48
      |||||||  ||||||||| |||||||||||||||||||||||||||||||
seq2  ACACACAGGCACACACACTCACAGTGATTGATGATTATCATAAAGACAAT  50

seq1  TTTTATTAACTATACCGTAACCCCACATACTCTGACTATAGTCTCCTTCT  98
       ||||||||||||||||||||||||||||||||||||||||||| | | |
seq2  CTTTATTAACTATACCGTAACCCCACATACTCTGACTATAGTCT-CATAT  99

seq1  GCATTTCCCCTCTGCATACCCCCCTTTGCATCCCTTCCCCTTCAGAACTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCCCTCTGCATACCCCCCTTTGCATCCCTTCCCCTTCAGAACTG  149

seq1  GTCACTCTTTCATGAATATATATATATATATTCTGATTTTTCTCATTGTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCTTTCATGAATATATATATATATATTCTGATTTTTCTCATTGTG  199

seq1  ATTTCTCTTCCTCATATAGGCTGTGGCTGATGTTTAGATTTTTCTTTTTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTTCCTCATATAGGCTGTGGCTGATGTTTAGATTTTTCTTTTTA  249

seq1  TTTCTTCAACTTGGATTATGTACATAATTCCCTTCCAACTTATATTTTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCAACTTGGATTATGTACATAATTCCCTTCCAACTTATATTTTAA  299

seq1  GTCTTATGACATCTTGAGATTATAGCCAATTTCAAGAATTAGCACACAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATGACATCTTGAGATTATAGCCAATTTCAAGAATTAGCACACAGT  349

seq1  GTTCGCTCCACTCTTTAATTATATAAACTGGTGTCATTGAAAATAAAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGCTCCACTCTTTAATTATATAAACTGGTGTCATTGAAAATAAAATT  399

seq1  GGTATATAATGAGATAGTTTAATAAGCAGCCATTAATGAGTTTAAATTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATAATGAGATAGTTTAATAAGCAGCCATTAATGAGTTTAAATTTT  449

seq1  AATTTTGCAGTTTAATCTTATATTTTCAAGACCTTTACACTTTGAAAATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCAGTTTAATCTTATATTTTCAAGACCTTTACACTTTGAAAATC  499

seq1  TGATAGATGGATTAAAATATCCAGATCTTTTCTCTCATTTATCACTATCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGATGGATTAAAATATCCAGATCTTTTCTCTCATTTATCACTATCC  549

seq1  ACCCTTATAAGGAATTATGCATTTTGTTGCTTCAGAGTGCAAAAGTACTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTATAAGGAATTATGCATTTTGTTGCTTCAGAGTGCAAAAGTACTT  599

seq1  CTTTTACTTCAAACCTATTACCATCCTGGCTTTTCCATGACTCTGCCATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACTTCAAACCTATTACCATCCTGGCTTTTCCATGACTCTGCCATC  649

seq1  CATACTTCCAGTCTCTTTAAAAACATTTCTTCCTTAATTAAGCAAAACAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTCCAGTCTCTTTAAAAACATTTCTTCCTTAATTAAGCAAAACAG  699

seq1  TAGATTGATGACTGATTGCGAAGGGGCCGTGTGGAAAATAAACAGTGCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGATGACTGATTGCGAAGGGGCCGTGTGGAAAATAAACAGTGCTT  749

seq1  TGAATTC  755
      |||||||
seq2  TGAATTC  756