BAC Information

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BAC

Clone NameB6Ng01-007M21
Chromosome11 (Build37)
Map Location 72,826,292 - 73,013,678
singlet/doubletdoublet
Overlap geneP2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl
Upstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3
Downstream geneTrpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007M21.bB6Ng01-007M21.g
ACCDH844266DH844267
length876312
definitionDH844266|Mus musculus domesticus DNA, BAC clone: B6Ng01-007M21, 5' end.DH844267|Mus musculus domesticus DNA, BAC clone: B6Ng01-007M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,012,806 - 73,013,678)(72,826,292 - 72,826,603)
sequence
gaattctttgagtaaccaagtgaaattatcagtttacttgaacttcaaag
gcatgaggtaagcctaacgctacgtctcatttccagagcacaacctgcct
agggggtggggtcggaaatgatgcctgaactagagggcacagggtcatga
gtggcgagcgtgatagtcaggcctgtggttatcactttgaaagcaagtcc
tctcggcgcaaagtacaaaaagtgatgggcggatagtagagggatccagc
gccatggtcaggggccccagaaaagccggagagcgggaagatcggtgcca
gcaggtgggaaagctccctgggcaaaatctaacggcttagcttgagctgc
agcaggctttgaagccctagaggaaagggcagcaggccttggaggtccga
cagactgggcaatcacgggtacttcttcgcgggaaggtgttgcccgagat
gcccccagggtcgtcccggggcggcagctccagggctctgcctcacctgg
ggcccggccaccgcgctctcagtctctgccctcgcagcccgggcgcagct
cgccagcaccacgaacccggatgggaggctgggtgcagcctccaataggg
cggccttcacggacgtggtgcccaagtcgataccgagagtgacaggtcgc
gaagccatggcagtggtgacagcacagctcggtggcttgaaccgcacgcc
ggggaacacttcactctggagggcagtaaggggggcggagctttccttgt
caatcttttaaccacttctattggtcgaggaaagcaaacaccacgcgctc
ctcacagcggcctccggtgataggtggagagacgacagaaaggcggatct
attggtcatagtgttccgggacagtg
aactcttctggatggaggctcaccattctccttgagcaatgctggagggt
cccttcctaatgctcaggcacacaatgtgctttgtcaccttctcccgcta
cctgtccgtcgcccccagatttgccaggcactttgtgcagaatgggacaa
accgtcgtcacctcttcaaggtgtttgggattcgctttgatatccttgtg
gatggcaaggtaagtgtcctatgtgaagggatggctgccaaggcaccttc
ctgctttggatgtctgttgttatggatgatatgaaatgatatgatattgt
tatggatgatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_73012806_73013678
seq2: B6Ng01-007M21.b_42_917 (reverse)

seq1  CACTGTCCCGGAAC-CTCTGACCAATAGATCCCGCCTTCTGTCGTCTCTC  49
      |||||||||||||| || ||||||||||||||  | ||||||||||||||
seq2  CACTGTCCCGGAACACTATGACCAATAGATCCGCCTTTCTGTCGTCTCTC  50

seq1  CACCTATCACCGGAGGCCGCTGTGGGGAGCGCGTGGTGTTTGCTTTCCTC  99
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CACCTATCACCGGAGGCCGCTGTGAGGAGCGCGTGGTGTTTGCTTTCCTC  100

seq1  GACCAATAGAAGTGGTTAAAAGATTGACAAGG-AAGCTCCG-CCCCCTTA  147
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  GACCAATAGAAGTGGTTAAAAGATTGACAAGGAAAGCTCCGCCCCCCTTA  150

seq1  CTGCCCTCCAGAGTGAAGTGTTCCCCGGCGTGCGGTTCAAGCCACCGAGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCCAGAGTGAAGTGTTCCCCGGCGTGCGGTTCAAGCCACCGAGC  200

seq1  TGTGCTGTCACCACTGCCATGGCTTCGCGACCTGTCACTCTCGGTATCGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTCACCACTGCCATGGCTTCGCGACCTGTCACTCTCGGTATCGA  250

seq1  CTTGGGCACCACGTCCGTGAAGGCCGCCCTATTGGAGGCTGCACCCAGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCACCACGTCCGTGAAGGCCGCCCTATTGGAGGCTGCACCCAGCC  300

seq1  TCCCATCCGGGTTCGTGGTGCTGGCGAGCTGCGCCCGGGCTGCGAGGGCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCCGGGTTCGTGGTGCTGGCGAGCTGCGCCCGGGCTGCGAGGGCA  350

seq1  GAGACTGAGAGCGCGGTGGCCGGGCCCCAGGTGAGGCAGAGCCCTGGAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGAGAGCGCGGTGGCCGGGCCCCAGGTGAGGCAGAGCCCTGGAGC  400

seq1  TGCCGCCCCGGGACGACCCTGGGGGCATCTCGGGCAACACCTTCCCGCGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGCCCCGGGACGACCCTGGGGGCATCTCGGGCAACACCTTCCCGCGA  450

seq1  AGAAGTACCCGTGATTGCCCAGTCTGTCGGACCTCCAAGGCCTGCTGCCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTACCCGTGATTGCCCAGTCTGTCGGACCTCCAAGGCCTGCTGCCC  500

seq1  TTTCCTCTAGGGCTTCAAAGCCTGCTGCAGCTCAAGCTAAGCCGTTAGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTAGGGCTTCAAAGCCTGCTGCAGCTCAAGCTAAGCCGTTAGAT  550

seq1  TTTGCCCAGGGAGCTTTCCCACCTGCTGGCACCGATCTTCCCGCTCTCCG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCAGGGAGCTTTCCCACCTGCTGGCACCGATCTTCCCGCTCTCCG  600

seq1  GCTTTTCTGGGGCCCCTGACCATGGCGCTGGATCCCTCTACTATCCGCCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTGGGGCCCCTGACCATGGCGCTGGATCCCTCTACTATCCGCCC  650

seq1  ATCACTTTTTGTACTTTGCGCCGAGAGGACTTGCTTTCAAAGTGATAACC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTTTGTACTTTGCGCCGAGAGGACTTGCTTTCAAAGTGATAACC  700

seq1  ACAGGCCTGACTATCACGCTCGCCACTCATGACCCTGTGCCCTCTAGTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCTGACTATCACGCTCGCCACTCATGACCCTGTGCCCTCTAGTTC  750

seq1  AGGCATCATTTCCGACCCCACCCCCTAGGCAGGTTGTGCTCTGGAAATGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCATTTCCGACCCCACCCCCTAGGCAGGTTGTGCTCTGGAAATGA  800

seq1  GACGTAGCGTTAGGCTTACCTCATGCCTTTGAAGTTCAAGTAAACTGATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTAGCGTTAGGCTTACCTCATGCCTTTGAAGTTCAAGTAAACTGATA  850

seq1  ATTTCACTTGGTTACTCAAAGAATTC  873
      ||||||||||||||||||||||||||
seq2  ATTTCACTTGGTTACTCAAAGAATTC  876

seq1: chr11_72826292_72826603
seq2: B6Ng01-007M21.g_73_384

seq1  AACTCTTCTGGATGGAGGCTCACCATTCTCCTTGAGCAATGCTGGAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCTGGATGGAGGCTCACCATTCTCCTTGAGCAATGCTGGAGGGT  50

seq1  CCCTTCCTAATGCTCAGGCACACAATGTGCTTTGTCACCTTCTCCCGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTAATGCTCAGGCACACAATGTGCTTTGTCACCTTCTCCCGCTA  100

seq1  CCTGTCCGTCGCCCCCAGATTTGCCAGGCACTTTGTGCAGAATGGGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCGTCGCCCCCAGATTTGCCAGGCACTTTGTGCAGAATGGGACAA  150

seq1  ACCGTCGTCACCTCTTCAAGGTGTTTGGGATTCGCTTTGATATCCTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCGTCACCTCTTCAAGGTGTTTGGGATTCGCTTTGATATCCTTGTG  200

seq1  GATGGCAAGGTAAGTGTCCTATGTGAAGGGATGGCTGCCAAGGCACCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAAGGTAAGTGTCCTATGTGAAGGGATGGCTGCCAAGGCACCTTC  250

seq1  CTGCTTTGGATGTCTGTTGTTATGGATGATATGAAATGATATGATATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGGATGTCTGTTGTTATGGATGATATGAAATGATATGATATTGT  300

seq1  TATGGATGATAT  312
      ||||||||||||
seq2  TATGGATGATAT  312