BAC Information

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BAC

Clone NameB6Ng01-008H13
Chromosome11 (Build37)
Map Location 37,899,156 - 38,031,817
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039148
Downstream geneLOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008H13.bB6Ng01-008H13.g
ACCDH844717DH844718
length923691
definitionDH844717|Mus musculus domesticus DNA, BAC clone: B6Ng01-008H13, 5' end.DH844718|Mus musculus domesticus DNA, BAC clone: B6Ng01-008H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,899,156 - 37,900,078)(38,031,126 - 38,031,817)
sequence
gaattctatgaagtaaaacctgtcaattatgtctacaaatatagcgagtt
agtgagttttcattctcacaacttgattagaattagaataaccaaggaga
ttaaggaccattgttcatttagtttgtgaggcctttccagaccagattaa
acaaagtgtctccatgccatggatgggggacctcagagaataaatgagga
gcaggtgtgaaaattctcaccttccccttatttgttctctgatacctgat
gaccatgatatggcccatctcatactacagaggaagatcaaaactatatt
ctcagcaggagtgagtgactgtagctaactgttttgagattgtacatata
taattaaaatatatatacaaataatttattgagttattactaagaggctt
aagattgaatcagctagcctttctagagagggcaagagatgtctttctca
tcttcttctctcttctgagcagtagagtttagtggcaaacctgctgaaac
cacttggccagaacatacctctgggagttctaaatcattttatgattgca
gggatccaacagctcagagaataatctttgcatgattgaaaaggagtccc
tataccaggtaacatatatttaagaaagaaatgctaccttatgtttatgc
cctcaaaacaaagtaaactagttatatgatgaaagcattaaaatttaaat
gggaacattttaaatcttggattaatattttaaaccacttgccacaagtt
taatatcacattctggaggtacaataagaagcactccagggcatccactt
gaaagtgattatgactgttattatagaaaaatgcaaggtgatttgcaagc
ttacgtcttacctcccaagggaattgttaataggcatattgacactatat
tcatagattgttcttttggtgtt
gaattctttcccacagagtgcaattgaagcttctttagaaaatgtctgga
atcccactttcttaataattttgtaaatgttataaaacaaacattttaat
aaggagaaaaatgtacaaaacaaacatgacagctatactgactagcttta
ttttaacttgacacaacatagcatcatcaaagaggaggaagtctcaattg
agaaaagagatcatgctttgggcagggaagactcatagggtatttcctta
attagtgattgatggaggaggctctaggttgatggtactgggctctaaaa
aattgcaacctaacaaactatgaaaagtaaaccagcaaaaaacattctcc
atggcttctccatcacctcctgcctctgagatctggccccgcttgagtgc
ctgtcttgacttctcttgattatgagctgtaatatggaagccgaagcaga
ataaaccttttgctaaccaagtttcttcggtcatggtttttcatcacagc
aatattaaccttaactaagtagctttgaaccctaaacagttaaactctcc
cgttctggtttggttctacccacttaagaatatggctagttggaatctga
cctaagaatatggctagttggaatctgacctaagaatatggctagttgga
atctgagaatgtgatgctacttagcatcgtttatttgtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_37899156_37900078
seq2: B6Ng01-008H13.b_35_957

seq1  GAATTCTATGAAGTAAAACCTGTCAATTATGTCTACAAATATAGCGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAAGTAAAACCTGTCAATTATGTCTACAAATATAGCGAGTT  50

seq1  AGTGAGTTTTCATTCTCACAACTTGATTAGAATTAGAATAACCAAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTTTCATTCTCACAACTTGATTAGAATTAGAATAACCAAGGAGA  100

seq1  TTAAGGACCATTGTTCATTTAGTTTGTGAGGCCTTTCCAGACCAGATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGACCATTGTTCATTTAGTTTGTGAGGCCTTTCCAGACCAGATTAA  150

seq1  ACAAAGTGTCTCCATGCCATGGATGGGGGACCTCAGAGAATAAATGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGTCTCCATGCCATGGATGGGGGACCTCAGAGAATAAATGAGGA  200

seq1  GCAGGTGTGAAAATTCTCACCTTCCCCTTATTTGTTCTCTGATACCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTGAAAATTCTCACCTTCCCCTTATTTGTTCTCTGATACCTGAT  250

seq1  GACCATGATATGGCCCATCTCATACTACAGAGGAAGATCAAAACTATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGATATGGCCCATCTCATACTACAGAGGAAGATCAAAACTATATT  300

seq1  CTCAGCAGGAGTGAGTGACTGTAGCTAACTGTTTTGAGATTGTACATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGGAGTGAGTGACTGTAGCTAACTGTTTTGAGATTGTACATATA  350

seq1  TAATTAAAATATATATACAAATAATTTATTGAGTTATTACTAAGAGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAATATATATACAAATAATTTATTGAGTTATTACTAAGAGGCTT  400

seq1  AAGATTGAATCAGCTAGCCTTTCTAGAGAGGGCAAGAGATGTCTTTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGAATCAGCTAGCCTTTCTAGAGAGGGCAAGAGATGTCTTTCTCA  450

seq1  TCTTCTTCTCTCTTCTGAGCAGTAGAGTTTAGTGGCAAACCTGCTGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTCTCTTCTGAGCAGTAGAGTTTAGTGGCAAACCTGCTGAAAC  500

seq1  CACTTGGCCAGAACATACCTCTGGGAGTTCTAAATCATTTTATGATTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGCCAGAACATACCTCTGGGAGTTCTAAATCATTTTATGATTGCA  550

seq1  GGGATCCAACAGCTCAGAGAATAATCTTTGCATGATTGAAAAGGAGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCAACAGCTCAGAGAATAATCTTTGCATGATTGAAAAGGAGTCCC  600

seq1  TATACCAGGTAACATATATTTAAGAAAGAAATGCTACCTTATGTTTATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAGGTAACATATATTTAAGAAAGAAATGCTACCTTATGTTTATGC  650

seq1  CCTCAAAACAAAGTAAACTAGTTATATGATGAAAGCATTAAAATTTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAACAAAGTAAACTAGTTATATGATGAAAGCATTAAAATTTAAAT  700

seq1  GGGAACATTTTAAATCTTGGATTAATA-TTTAAACCACTTGCCACAAGTT  749
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  GGGAACATTTTAAATCTTGGATTAATATTTTAAACCACTTGCCACAAG-T  749

seq1  TTAATATCACATTCTGGAGGTACAATAAGAAGCACTCCAGGGCATCCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATCACATTCTGGAGGTACAATAAGAAGCACTCCAGGGCATCCACT  799

seq1  TGAAGGTGA-TATGACTGTATTTATAGAAAAATGCAAGGTGATTTGCAAG  848
      |||| |||| |||||||||  |||||||||||||||||||||||||||||
seq2  TGAAAGTGATTATGACTGTTATTATAGAAAAATGCAAGGTGATTTGCAAG  849

seq1  CTAACGTC-TACCTCCCAA-GGAATGCTATATAGGCATATTGACACTATA  896
      || ||||| |||||||||| |||||  |  ||||||||||||||||||||
seq2  CTTACGTCTTACCTCCCAAGGGAATTGTTAATAGGCATATTGACACTATA  899

seq1  TTTCATAGAATTGTTTCTTTTGGTGTT  923
       ||||||| |||| |||||||||||||
seq2  -TTCATAG-ATTG-TTCTTTTGGTGTT  923

seq1: chr11_38031126_38031817
seq2: B6Ng01-008H13.g_70_760 (reverse)

seq1  TTCACACAGTAAACGATGCTAAGTAGCATCACATTCTCAGATTCCAACTA  50
      |||||| | |||||||||||||||||||||||||||||||||||||||||
seq2  TTCACA-AATAAACGATGCTAAGTAGCATCACATTCTCAGATTCCAACTA  49

seq1  GCCATATTCTTAGGTCAGATTCCAACTAGCCATATTCTTAGGTCAGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATTCTTAGGTCAGATTCCAACTAGCCATATTCTTAGGTCAGATTC  99

seq1  CAACTAGCCATATTCTTAGGTGGGTAGAACCAAACCAGAACGGGAGAGTT  150
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAACTAGCCATATTCTTAAGTGGGTAGAACCAAACCAGAACGGGAGAGTT  149

seq1  TAACTGTTTAGGGTTCAAAGCTACTTAGTTAAGGTTAATATTGCTGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTTAGGGTTCAAAGCTACTTAGTTAAGGTTAATATTGCTGTGAT  199

seq1  GAAAAACCATGACCGAAGAAACTTGGTTAGCAAAAGGTTTATTCTGCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCATGACCGAAGAAACTTGGTTAGCAAAAGGTTTATTCTGCTTC  249

seq1  GGCTTCCATATTACAGCTCATAATCAAGAGAAGTCAAGACAGGCACTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCATATTACAGCTCATAATCAAGAGAAGTCAAGACAGGCACTCAA  299

seq1  GCGGGGCCAGATCTCAGAGGCAGGAGGTGATGGAGAAGCCATGGAGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGCCAGATCTCAGAGGCAGGAGGTGATGGAGAAGCCATGGAGAATG  349

seq1  TTTTTTGCTGGTTTACTTTTCATAGTTTGTTAGGTTGCAATTTTTTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCTGGTTTACTTTTCATAGTTTGTTAGGTTGCAATTTTTTAGAG  399

seq1  CCCAGTACCATCAACCTAGAGCCTCCTCCATCAATCACTAATTAAGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTACCATCAACCTAGAGCCTCCTCCATCAATCACTAATTAAGGAAA  449

seq1  TACCCTATGAGTCTTCCCTGCCCAAAGCATGATCTCTTTTCTCAATTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTATGAGTCTTCCCTGCCCAAAGCATGATCTCTTTTCTCAATTGAG  499

seq1  ACTTCCTCCTCTTTGATGATGCTATGTTGTGTCAAGTTAAAATAAAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTCCTCTTTGATGATGCTATGTTGTGTCAAGTTAAAATAAAGCTA  549

seq1  GTCAGTATAGCTGTCATGTTTGTTTTGTACATTTTTCTCCTTATTAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTATAGCTGTCATGTTTGTTTTGTACATTTTTCTCCTTATTAAAAT  599

seq1  GTTTGTTTTATAACATTTACAAAATTATTAAGAAAGTGGGATTCCAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTATAACATTTACAAAATTATTAAGAAAGTGGGATTCCAGACA  649

seq1  TTTTCTAAAGAAGCTTCAATTGCACTCTGTGGGAAAGAATTC  692
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAAGAAGCTTCAATTGCACTCTGTGGGAAAGAATTC  691