BAC Information

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BAC

Clone NameB6Ng01-008L17
Chromosome11 (Build37)
Map Location 22,780,459 - 22,961,393
singlet/doubletdoublet
Overlap geneCommd1, Zrsr1, Cct4, 4930430E16Rik
Upstream geneAV249152, LOC382494, LOC666047, Otx1, Ehbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik
Downstream geneLOC100042875, Xpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008L17.bB6Ng01-008L17.g
ACCDH844889DH844890
length1,064982
definitionDH844889|Mus musculus domesticus DNA, BAC clone: B6Ng01-008L17, 5' end.DH844890|Mus musculus domesticus DNA, BAC clone: B6Ng01-008L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,780,459 - 22,781,530)(22,960,401 - 22,961,393)
sequence
gaattcagcttaaaagaacaaaaaactcaacttttcccacaaaggtcagt
tttgtctggaacagcacagcactcttctcaggacttcacagagcaagctt
gctctcagggaactctctgtcctccaaatgctcttttccgcccagctctt
cctgcccttcatcccaggggaggtccattgtctttattctaattggactt
ttaaaaagtatttatttatactgcaccctactttgaaaaaagctttgaag
aaatttaaaaactaaaatatcttcctcattaagcaggacaaaaaaaaatt
attcaaaagggaacagaaaaatagatgagagtgaataagcacttgctttc
aggagtacttctaacttctagcatctgaatcagaaagacacaacagtatg
aggcagcatttggcttttcccatgtgatgctgtcaaagttcagtgtagac
tcctatgtttccatttcactatcttgctttgaattactggcttatccact
taacaaacatttggaaagggcttttccagtcgtttggctccatgtggact
ggacttttatctaaggtgaagctctaatccaaagtatggtggtgtttgaa
ggtggggcccgtggaaggtaatgttgagtggaaggtgagacagaggaacc
cctcctcccaagtgaggaacctccaaaccaggaaaagcctttccataatt
gaaaagctggtattttctagatatcaaaactgtgagaaaataaatatgta
ctgggtaagctacttagtttatggcacattgttacagcatttgcagctaa
gatggcagaaccaagcaaagaataaacatactttgagtcgctcttgttaa
cgctgtctgagggccttgtctcttgtgcactgccatctatggtgtactgg
agcctgaaatattgaaatattgagtgctgatggtttgagccctagctcat
atatctgaatgcttagtcaccagggaatagaaacccttgataggttagag
gattcaaagggtgaccttgatggagggagtgtgttcttgggagctaggaa
ccttgagtttcaaa
gaattcccgaacagccaagactacaaagagaaaccctgtcttgaaaacaa
aaaaacaaaagcaaccataataatgggaatttgtaggagacacaaagaga
cagaccaattatgagtcagtagtctacagtgcaatgcgtaaagacatagt
ctcagagaggagtatcttaaattgctttgactaaatgatttactgccatt
cttcagcatagtgaccaaataaaacaaagtaatagtaaatggtactgtga
gcatcactgtgtgggcacagagtatggctttgtgcaagcctattctcata
tctcacaggttatattagaatagtaaagggaagtattaggcactaaatat
tgatttgcttgtgatcatcaataaacatctattagcacaaatgtcaatga
acatactttacaatagctaagacagtttactcttaatagaatttttctgt
actttatttcttcgtgtggaagaagggtggtattagaggtgactacaagg
ccttacacaccctggataggtgctttgcctctaactacatgcccagccct
aaaatttctattttcttatttggggctacaaagttatctaacttcatcca
ggacttcagctttttaagtgctgaatatttctagtgctatgttagttgaa
ttttgtggtggacattgtacatttgtggtgtattccagctatgtagcagc
tatctagtacagagttctagaactaagttgtatgtatttagagattagtt
ctaatctgcttgcttaatcagacaatcttttactcttgtcatgtgaagtg
tcacttctaacaaaatcactgcctcctgcttccttgccaaagccatatgc
ccagtttgagctaatcagatataagaaaagtagaagagataacccactag
ccctcttcccagactcaaggtggattttttttcttaagaaatatgaaagc
ggagcctcaatattttttaattgctgaaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_22780459_22781530
seq2: B6Ng01-008L17.b_42_1105

seq1  GAATTCAGCTTAAAAGAACAAAAAACTCAACTTTTCCCACAAAGGTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTAAAAGAACAAAAAACTCAACTTTTCCCACAAAGGTCAGT  50

seq1  TTTGTCTGGAACAGCACAGCACTCTTCTCAGGACTTCACAGAGCAAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGGAACAGCACAGCACTCTTCTCAGGACTTCACAGAGCAAGCTT  100

seq1  GCTCTCAGGGAACTCTCTGTCCTCCAAATGCTCTTTTCCGCCCAGCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAGGGAACTCTCTGTCCTCCAAATGCTCTTTTCCGCCCAGCTCTT  150

seq1  CCTGCCCTTCATCCCAGGGGAGGTCCATTGTCTTTATTCTAATTGGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTTCATCCCAGGGGAGGTCCATTGTCTTTATTCTAATTGGACTT  200

seq1  TTAAAAAGTATTTATTTATACTGCACCCTACTTTGAAAAAAGCTTTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTATTTATTTATACTGCACCCTACTTTGAAAAAAGCTTTGAAG  250

seq1  AAATTTAAAAACTAAAATATCTTCCTCATTAAGCAGGACAAAAAAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAAACTAAAATATCTTCCTCATTAAGCAGGACAAAAAAAAATT  300

seq1  ATTCAAAAGGGAACAGAAAAATAGATGAGAGTGAATAAGCACTTGCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAAGGGAACAGAAAAATAGATGAGAGTGAATAAGCACTTGCTTTC  350

seq1  AGGAGTACTTCTAACTTCTAGCATCTGAATCAGAAAGACACAACAGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTACTTCTAACTTCTAGCATCTGAATCAGAAAGACACAACAGTATG  400

seq1  AGGCAGCATTTGGCTTTTCCCATGTGATGCTGTCAAAGTTCAGTGTAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCATTTGGCTTTTCCCATGTGATGCTGTCAAAGTTCAGTGTAGAC  450

seq1  TCCTATGTTTCCATTTCACTATCTTGCTTTGAATTACTGGCTTATCCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGTTTCCATTTCACTATCTTGCTTTGAATTACTGGCTTATCCACT  500

seq1  TAACAAACATTTGGAAAGGGCTTTTCCAGTCGTTTGGCTCCATGTGGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAACATTTGGAAAGGGCTTTTCCAGTCGTTTGGCTCCATGTGGACT  550

seq1  GGACTTTTATCTAAGGTGAAGCTCTAATCCAAAGTATGGTGGTGTTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTATCTAAGGTGAAGCTCTAATCCAAAGTATGGTGGTGTTTGAA  600

seq1  GGTGGGGCCCGTGGAAGGTAATGTTGAGTGGAAGGTGAGACAGAGGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGCCCGTGGAAGGTAATGTTGAGTGGAAGGTGAGACAGAGGAACC  650

seq1  CCTCCTCCCAAGTGAGGAACCTCCAAACCAGGAAAAGCCTTTCCATAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCCAAGTGAGGAACCTCCAAACCAGGAAAAGCCTTTCCATAATT  700

seq1  GAAAAGCTGGTATTTTCTAGATATCAAAACTGTGAGAAAATAAATATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTGGTATTTTCTAGATATCAAAACTGTGAGAAAATAAATATGTA  750

seq1  CTGGGTAAGCTACTTAGTTTATGGCACATTGTTACAGCATTTGCAGCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAAGCTACTTAGTTTATGGCACATTGTTACAGCATTTGCAGCTAA  800

seq1  GATGGCAGAACCAAGCAAAGAATAAACATACTTTGAGTCGCTCTTGTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAGAACCAAGCAAAGAATAAACATACTTTGAGTCGCTCTTGTTAA  850

seq1  CGCTGTCTGAGGGCCTTGTCTCTTGTGCACTGCCATCTATGGTGTACTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTCTGAGGGCCTTGTCTCTTGTGCACTGCCATCTATGGTGTACTGG  900

seq1  AGCCTGAAATATTGAAATATTGAGTGCTGATGGTTTGAGCCCCTAGGCTC  950
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  AGCCTGAAATATTGAAATATTGAGTGCTGATGGTTTGAG-CCCTA-GCTC  948

seq1  ATATATCTGAATGCTTAGTCACCAGGGAATAGAAACCCTTGATAGGGTTA  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATATATCTGAATGCTTAGTCACCAGGGAATAGAAACCCTTGATA-GGTTA  997

seq1  GAAGGATTCAGAGGGGTGACCTTGATGGAGGAAGTGTGTTCCTGGGAGCT  1050
      | |||||||| | |||||||||||||||||| ||||||||| ||||||||
seq2  G-AGGATTCA-AAGGGTGACCTTGATGGAGGGAGTGTGTTCTTGGGAGCT  1045

seq1  AGGGGAACTTTGAGGTTTCAAA  1072
      |  ||||| |||| ||||||||
seq2  A--GGAACCTTGA-GTTTCAAA  1064

seq1: chr11_22960401_22961393
seq2: B6Ng01-008L17.g_68_1049 (reverse)

seq1  TTCTTTCAGCACTTAAAAAATATTTGCTGCTCCTGCTTTCATAATTTCTT  50
      ||||||||||| |||||||||| |||  ||||| |||||||| |||||||
seq2  TTCTTTCAGCAATTAAAAAATA-TTGAGGCTCC-GCTTTCAT-ATTTCTT  47

seq1  AAGGAAAAAAAATCCACCATTGGGTCTGGGAAGATGGCTTAGTGGGTCAT  100
      || ||||||||||||||| ||| ||||||||||| ||| |||||||| ||
seq2  AA-GAAAAAAAATCCACC-TTGAGTCTGGGAAGAGGGC-TAGTGGGTTAT  94

seq1  CTCTTCTACCTTCTCTTATATCTGATTAGCTCAAACTGGGCCTATTGGCT  150
      |||||||| ||| |||||||||||||||||||||||||||| || |||||
seq2  CTCTTCTA-CTTTTCTTATATCTGATTAGCTCAAACTGGGCATA-TGGCT  142

seq1  TTGGGCAAGGAAGCAGGAGGCAGTGATTTTGTTTAGAAGTGGCACTTCAC  200
      || |||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  TT-GGCAAGGAAGCAGGAGGCAGTGATTTTG-TTAGAAGTGACACTTCAC  190

seq1  ATGACAAGAGTAAAAGATTGTCTGATTAAGCAAGCAGATTAGAACTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAGAGTAAAAGATTGTCTGATTAAGCAAGCAGATTAGAACTAATC  240

seq1  TCTAAATACATACAACTTAGTTCTAGAACTCTGTAACTAGATAGCTGCTA  300
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTAAATACATACAACTTAGTTCTAGAACTCTGT-ACTAGATAGCTGCTA  289

seq1  CATAGCTGGAATACACCACAAATGTACAATGTCCACCACAAAATTCAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTGGAATACACCACAAATGTACAATGTCCACCACAAAATTCAACT  339

seq1  AACATAGCACTAGAAATATTCAGCACTTAAAAAGCTGAAGTCCTGGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGCACTAGAAATATTCAGCACTTAAAAAGCTGAAGTCCTGGATGA  389

seq1  AGTTAGATAACTTTGTAGCCCCAAATAAGAAAATAGAAATTTTAGGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGATAACTTTGTAGCCCCAAATAAGAAAATAGAAATTTTAGGGCTG  439

seq1  GGCATGTAGTTAGAGGCAAAGCACCTATCCAGGGTGTGTAAGGCCTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTAGTTAGAGGCAAAGCACCTATCCAGGGTGTGTAAGGCCTTGTA  489

seq1  GTCACCTCTAATACCACCCTTCTTCCACACGAAGAAATAAAGTACAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTCTAATACCACCCTTCTTCCACACGAAGAAATAAAGTACAGAAA  539

seq1  AATTCTATTAAGAGTAAACTGTCTTAGCTATTGTAAAGTATGTTCATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATTAAGAGTAAACTGTCTTAGCTATTGTAAAGTATGTTCATTGA  589

seq1  CATTTGTGCTAATAGATGTTTATTGATGATCACAAGCAAATCAATATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGCTAATAGATGTTTATTGATGATCACAAGCAAATCAATATTTA  639

seq1  GTGCCTAATACTTCCCTTTACTATTCTAATATAACCTGTGAGATATGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTAATACTTCCCTTTACTATTCTAATATAACCTGTGAGATATGAGA  689

seq1  ATAGGCTTGCACAAAGCCATACTCTGTGCCCACACAGTGATGCTCACAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTTGCACAAAGCCATACTCTGTGCCCACACAGTGATGCTCACAGT  739

seq1  ACCATTTACTATTACTTTGTTTTATTTGGTCACTATGCTGAAGAATGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTACTATTACTTTGTTTTATTTGGTCACTATGCTGAAGAATGGCA  789

seq1  GTAAATCATTTAGTCAAAGCAATTTAAGATACTCCTCTCTGAGACTATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCATTTAGTCAAAGCAATTTAAGATACTCCTCTCTGAGACTATGT  839

seq1  CTTTACGCATTGCACTGTAGACTACTGACTCATAATTGGTCTGTCTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACGCATTGCACTGTAGACTACTGACTCATAATTGGTCTGTCTCTTT  889

seq1  GTGTCTCCTACAAATTCCCATTATTATGGTTGCTTTTGTTTTTTTGTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCCTACAAATTCCCATTATTATGGTTGCTTTTGTTTTTTTGTTTT  939

seq1  CAAGACAGGGTTTCTCTTTGTAGTCTTGGCTGTTCTGGAATTC  993
      ||||||||||||||||||||||||||||||||||| |||||||
seq2  CAAGACAGGGTTTCTCTTTGTAGTCTTGGCTGTTCGGGAATTC  982