BAC Information

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BAC

Clone NameB6Ng01-009D08
Chromosome11 (Build37)
Map Location 104,777,050 - 104,907,650
singlet/doubletdoublet
Overlap geneLOC632784, LOC276809, LOC100041125
Upstream geneNsf, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749
Downstream gene4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009D08.bB6Ng01-009D08.g
ACCDH845213DH845214
length1,1451,113
definitionDH845213|Mus musculus domesticus DNA, BAC clone: B6Ng01-009D08, 5' end.DH845214|Mus musculus domesticus DNA, BAC clone: B6Ng01-009D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,906,287 - 104,907,650)(104,777,050 - 104,778,175)
sequence
gaattcatataatgcaatgcaagacaaagcatacaacactccttaaatat
agtcttgaatccattgttagtctcttttgataaaagagagtaatggtgta
ctcctggctaatcttagaacttcgccatgattgctgtcaaatccatatgt
tcagttactgctcacttatagtgacagaactttgcaacgaccattctcat
atactatatacttcatttctttgttcagtatttctcaaattaaagtggaa
agccactggatacatttaaaacagtttgtaaaattgtacatttgaaagca
ccggatgggagatgctgccactgagacaaccaagacttaaagttgccata
gacagtctcttccattatgatgtggtcatggggacacagtgtgtttgtac
tgttgtgttattcttagtattccaatactgatagtaaccctcagaatgag
ctaccagtgatcagtctatattcccactgttatctaattgttagtgtagt
ggcttacaggagaccaatgctacacaaacatttacttaaacaatagttac
atcaaaatgcaaatgcattatggttaatgaatttaccttaaaaccaactt
gtcttcttgcttcaacctcctcagttctgagactatgccatcacacctgt
ctctgattttgctcttactggcaccatattactataacattttaactttt
gaaaattctaataacgcatggcagcatagcataatggctcctttctagaa
gccaggtgtggtggcttacacctcgaatctttggacttgggagtccaaag
caggaaaatcacaagtttgaggtgagcctgagctacataaagagaacttg
tctcaaaaattcaaaaagaaaaaaatattctggaaccagataacgtgagc
tttcttggcttcaccactttctagctctctgagttttgctagtgacatct
tagtttctttgtatgtaaaatagaggtaaaataaaacctaatttacagaa
cactacttggaaaattcacagctattacatttttatctcccttttttttt
tttttcatggacaccctggtccccattccagaccttccactagttcatgt
tgcaaagttactaggaggtaacccacgaatcagctggtaagtttg
gaattctgtgtgttggtttgcatatgttgaaccatgtctttctctctgga
atgaaggcagcctgatcacggtgaatgatctttttgtgtgttcttaaatg
aggtttatacgtattttactgaagatatttgtgtttgtgtttaccaggga
aattgccctgctgttctgtctttatctgcttttggtattggagcaacact
ggctttttaacaagtgttgcaaagcattctttcctttcctactttatggt
gctggcaaaggatttgccaattttattaatcttttcaaagaatcaacttc
tattttctcaactccattgttcgagtatttattccactgcttcccatcta
agccttggccttagattgatacagttcacatcctggggcttagaaagggc
tgagtctgaggtggttggccacatgaaagagaatcaccaagttagacgct
gttacttatcactgatttatagataccagcagtgtcttatacatatcccc
aaagccaattattatatagactgactactaatgtcttttatattcaataa
atgaattccccaatatttttaaacactttcctttttaaataaactttttt
taaaaacagatctatttatttattttatgtatgtgagtaccagaagaggg
catcagatcccattacagatggttgtaagccaccatgtcattgctgggaa
ttgaactcaggacctctggaagagcagtcagttctctgctcttcctcagt
gctctgcagagacatctctccagcccaaattaccaaatattttaataaag
aactatttggggaagagtaaaatgtcttagtaattgtctcagatatatag
aaataagtatacagaaagccaaggtaatagaaaatatgagagaagtattt
tgaccaaagatgaaacttcccttttgtgatggccactgatggaatgtatg
gctagtataagtcaaatttacatctttctaagcaatgtgaagaccataca
agccagaagactgaatgtctattttgctgaagattgcccaatcttataat
tataaattaataattaagattgaaaaaccaacaaagaattagattttggg
tccaggtataaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104906287_104907650
seq2: B6Ng01-009D08.b_48_1192 (reverse)

seq1  CAAAC-TACCAGCTGA-TCGTGAGTTTACCTCCTAGTAAACTTTGCAACA  48
      ||||| |||||||||| ||||| | |||||||||||| ||||||||||||
seq2  CAAACTTACCAGCTGATTCGTG-GGTTACCTCCTAGT-AACTTTGCAACA  48

seq1  TGAACCTAGTGGTAGGTCTGGGATGGGGA-CAGGGTGTCCATGAAAAAAA  97
      |||| ||||||| |||||||| ||||||| ||||||||||||| ||||||
seq2  TGAA-CTAGTGGAAGGTCTGGAATGGGGACCAGGGTGTCCATG-AAAAAA  96

seq1  AAAAAAAAGGGAGATAAAATGTAAGGTCCTCACACATAGCTACCAAACTG  147
      |||||||||||||||||||                               
seq2  AAAAAAAAGGGAGATAAAA-------------------------------  115

seq1  AACCCAGTGGTCACAGAGAGCATCTACACAGATGACAAATGTCTAGTTTC  197
                                                        
seq2  --------------------------------------------------  115

seq1  CAATTAGCACCACAGGAAATACTAAATATTCAAACAGGAATATTCAGGAT  247
                                                        
seq2  --------------------------------------------------  115

seq1  ATTAAGTTTTGGCCCATAGTGCTAATCCAATAGTGAGCAGCATGCAAGGA  297
                                                        
seq2  --------------------------------------------------  115

seq1  ACACATGTAAGGAATTATTCTAAGCATGTTACAGATAATTAGCTTGTTGA  347
          ||||||                             |||||   |||
seq2  ----ATGTAA-----------------------------TAGCT--GTGA  130

seq1  ATTTTCCAAGTAGTGTTCTGTAAATTAGGTTTTATTTTTACCTCTATTTT  397
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTTTCCAAGTAGTGTTCTGTAAATTAGGTTTTA-TTTTACCTCTATTTT  179

seq1  ACATACAAAGAAACTAAGATGTCACTTAGCAAAACTCAGAGAGCTAGAAA  447
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACATACAAAGAAACTAAGATGTCAC-TAGCAAAACTCAGAGAGCTAGAAA  228

seq1  GTGGTGAAGCCAAGAAAGCTCACGTTATCTGGTTCCAGAATATTTTTTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAAGCCAAGAAAGCTCACGTTATCTGGTTCCAGAATATTTTTTTC  278

seq1  TTTTTGAATTTTTGAGACAAGTTCTCTTTATGTAGCTCAGGCTCACCTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAATTTTTGAGACAAGTTCTCTTTATGTAGCTCAGGCTCACCTCA  328

seq1  AACTTGTGATTTTCCTGCTTTGGACTCCCAAGTCCAAAGATTCGAGGTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTGATTTTCCTGCTTTGGACTCCCAAGTCCAAAGATTCGAGGTGT  378

seq1  AAGCCACCACACCTGGCTTCTAGAAAGGAGCCATTATGCTATGCTGCCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACCACACCTGGCTTCTAGAAAGGAGCCATTATGCTATGCTGCCAT  428

seq1  GCGTTATTAGAATTTTTAAAAGTTAAAATGTTATAGTAATATGGTGCCAG  697
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCGTTATTAGAATTTTCAAAAGTTAAAATGTTATAGTAATATGGTGCCAG  478

seq1  TAAGAGCAAAATCAGAGACAGGTGTGATGGCATAGTCTCAGAACTGAGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCAAAATCAGAGACAGGTGTGATGGCATAGTCTCAGAACTGAGGA  528

seq1  GGTTGAAGCAAGAAGACAAGTTGGTTTTAAGGTAAATTCATTAACCATAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAGCAAGAAGACAAGTTGGTTTTAAGGTAAATTCATTAACCATAA  578

seq1  TGCATTTGCATTTTGATGTAACTATTGTTTAAGTAAATGTTTGTGTAGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGCATTTTGATGTAACTATTGTTTAAGTAAATGTTTGTGTAGCA  628

seq1  TTGGTCTCCTGTAAGCCACTACACTAACAATTAGATAACAGTGGGAATAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTCCTGTAAGCCACTACACTAACAATTAGATAACAGTGGGAATAT  678

seq1  AGACTGATCACTGGTAGCTCATTCTGAGGGTTACTATCAGTATTGGAATA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGATCACTGGTAGCTCATTCTGAGGGTTACTATCAGTATTGGAATA  728

seq1  CTAAGAATAACACAACAGTACAAACACACTGTGTCCCCATGACCACATCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATAACACAACAGTACAAACACACTGTGTCCCCATGACCACATCA  778

seq1  TAATGGAAGAGACTGTCTATGGCAACTTTAAGTCTTGGTTGTCTCAGTGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAAGAGACTGTCTATGGCAACTTTAAGTCTTGGTTGTCTCAGTGG  828

seq1  CAGCATCTCCCATCCGGTGCTTTCAAATGTACAATTTTACAAACTGTTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTCCCATCCGGTGCTTTCAAATGTACAATTTTACAAACTGTTTT  878

seq1  AAATGTATCCAGTGGCTTTCCACTTTAATTTGAGAAATACTGAACAAAGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATCCAGTGGCTTTCCACTTTAATTTGAGAAATACTGAACAAAGA  928

seq1  AATGAAGTATATAGTATATGAGAATGGTCGTTGCAAAGTTCTGTCACTAT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTATATAGTATATGAGAATGGTCGTTGCAAAGTTCTGTCACTAT  978

seq1  AAGTGAGCAGTAACTGAACATATGGATTTGACAGCAATCATGGCGAAGTT  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGCAGTAACTGAACATATGGATTTGACAGCAATCATGGCGAAGTT  1028

seq1  CTAAGATTAGCCAGGAGTACACCATTACTCTCTTTTATCAAAAGAGACTA  1297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTAGCCAGGAGTACACCATTACTCTCTTTTATCAAAAGAGACTA  1078

seq1  ACAATGGATTCAAGACTATATTTAAGGAGTGTTGTATGCTTTGTCTTGCA  1347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGATTCAAGACTATATTTAAGGAGTGTTGTATGCTTTGTCTTGCA  1128

seq1  TTGCATTATATGAATTC  1364
      |||||||||||||||||
seq2  TTGCATTATATGAATTC  1145

seq1: chr11_104777050_104778175
seq2: B6Ng01-009D08.g_68_1180

seq1  GAATTCTGTGTGTTGGTTTGCATATGTTGAACCATGTCTTTCTCTCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTGTTGGTTTGCATATGTTGAACCATGTCTTTCTCTCTGGA  50

seq1  ATGAAGGCAGCCTGATCACGGTGAATGATCTTTTTGTGTGTTCTTAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGCAGCCTGATCACGGTGAATGATCTTTTTGTGTGTTCTTAAATG  100

seq1  AGGTTTATACGTATTTTACTGAAGATATTTGTGTTTGTGTTTACCAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATACGTATTTTACTGAAGATATTTGTGTTTGTGTTTACCAGGGA  150

seq1  AATTGCCCTGCTGTTCTGTCTTTATCTGCTTTTGGTATTGGAGCAACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCCTGCTGTTCTGTCTTTATCTGCTTTTGGTATTGGAGCAACACT  200

seq1  GGCTTTTTAACAAGTGTTGCAAAGCATTCTTTCCTTTCCTACTTTATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTAACAAGTGTTGCAAAGCATTCTTTCCTTTCCTACTTTATGGT  250

seq1  GCTGGCAAAGGATTTGCCAATTTTATTAATCTTTTCAAAGAATCAACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAAAGGATTTGCCAATTTTATTAATCTTTTCAAAGAATCAACTTC  300

seq1  TATTTTCTCAACTCCATTGTTCGAGTATTTATTCCACTGCTTCCCATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTCAACTCCATTGTTCGAGTATTTATTCCACTGCTTCCCATCTA  350

seq1  AGCCTTGGCCTTAGATTGATACAGTTCACATCCTGGGGCTTAGAAAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGCCTTAGATTGATACAGTTCACATCCTGGGGCTTAGAAAGGGC  400

seq1  TGAGTCTGAGGTGGTTGGCCACATGAAAGAGAATCACCAAGTTAGACGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGAGGTGGTTGGCCACATGAAAGAGAATCACCAAGTTAGACGCT  450

seq1  GTTACTTATCACTGATTTATAGATACCAGCAGTGTCTTATACATATCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTATCACTGATTTATAGATACCAGCAGTGTCTTATACATATCCCC  500

seq1  AAAGCCAATTATTATATAGACTGACTACTAATGTCTTTTATATTCAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAATTATTATATAGACTGACTACTAATGTCTTTTATATTCAATAA  550

seq1  ATGAATTCCCCAATATTTTTAAACACTTTCCTTTTTAAATAAACTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTCCCCAATATTTTTAAACACTTTCCTTTTTAAATAAACTTTTTT  600

seq1  TAAAAACAGATCTATTTATTTATTTTATGTATGTGAGTACCAGAAGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAGATCTATTTATTTATTTTATGTATGTGAGTACCAGAAGAGGG  650

seq1  CATCAGATCCCATTACAGATGGTTGTAAGCCACCATGTCATTGCTGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATCCCATTACAGATGGTTGTAAGCCACCATGTCATTGCTGGGAA  700

seq1  TTGAACTCAGGACCTCTGGAAGAGCAGTCAGTTCTCTGCTCTTCCTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCAGGACCTCTGGAAGAGCAGTCAGTTCTCTGCTCTTCCTCAGT  750

seq1  GCTCTGCAGAGACATCTCTCCAGCCCAAATTACCAAATATTTTAATAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCAGAGACATCTCTCCAGCCCAAATTACCAAATATTTTAATAAAG  800

seq1  AACTATTTGGGGAAGAGTAAAATGTCTTAGTAATTGTCTCAGATATATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTGGGGAAGAGTAAAATGTCTTAGTAATTGTCTCAGATATATAG  850

seq1  AAATAAGTATACAGAAAGCCAAGGTAATAGAAAATATGAGAGAAGTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTATACAGAAAGCCAAGGTAATAGAAAATATGAGAGAAGTATTT  900

seq1  TGACCAAAAGATGAAAACTTCCCTTTTGTGATGGCCACTGATGGAATGTT  950
      ||||| ||||||| |||||||||||||||||||||||||||||||||| |
seq2  TGACC-AAAGATG-AAACTTCCCTTTTGTGATGGCCACTGATGGAATG-T  947

seq1  ATGGCTAGTATAAGTCAAATTTTACATCTTTCTAAGGCAAAATGTGAAAG  1000
      ||||||||||||||||||| ||||||||||||||||    |||||| |||
seq2  ATGGCTAGTATAAGTCAAA-TTTACATCTTTCTAAG---CAATGTG-AAG  992

seq1  ACCATACAAGCCAGAAGACTGAATGTCTTATTTTGCTGGAAGATTTGCCC  1050
      ||||||||||||||||||||||||||| ||||||||| ||||| ||||||
seq2  ACCATACAAGCCAGAAGACTGAATGTC-TATTTTGCT-GAAGA-TTGCCC  1039

seq1  AATCCTATTAATTATAAATT-ATATATAAGATTTGAAAAACCCAACAAAA  1099
      |||| || |||||||||||| |||  ||||| |||||||| |||||||| 
seq2  AATCTTA-TAATTATAAATTAATAATTAAGA-TTGAAAAA-CCAACAAAG  1086

seq1  GATTAGATTTTGGTTCAAGTTATAAAT  1126
       |||||||||||| || || |||||||
seq2  AATTAGATTTTGGGTCCAGGTATAAAT  1113