BAC Information

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BAC

Clone NameB6Ng01-009E01
Chromosome11 (Build37)
Map Location 53,421,001 - 53,597,436
singlet/doubletdoublet
Overlap geneIl4, Il13, LOC667731, Rad50, Il5, Irf1
Upstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a
Downstream geneLOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2, LOC677786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009E01.bB6Ng01-009E01.g
ACCDH845245DH845246
length987820
definitionDH845245|Mus musculus domesticus DNA, BAC clone: B6Ng01-009E01, 5' end.DH845246|Mus musculus domesticus DNA, BAC clone: B6Ng01-009E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,596,448 - 53,597,436)(53,421,001 - 53,421,813)
sequence
gaattcccctgagccctttctcaagaggtgacagcctgtctgccttcatt
ccttcctcttctgccctttgagcctaggctgggagctggaggggaaattc
tagctaggcctctgtctgccccttagcgggagagcagaggcaagaaaggc
tagacaaaaccttgacccccaagtagggtaagcagctggccctgggacct
tctctgatgaactagaaatctcaaatcccagggaccctctctccatttct
gagcagactgaaacccttggtgccgtctcctctgcacctcccaagtctgc
ttcctgtatgaccagcccttgagatccgaagatgctagaaagatgaggtt
ggggagtgaggtatcttctacctatgccggcctggcacagcatcctcagc
tgcacgcatgagcgaatgccacaatgtgcttacatcagaacttctaaaag
tgtaatgccctggtcacttccgggtgctgtcctgcagatgcctttaataa
atgtttttatttcctcataccgcttcctctttgcataactaaaccatgtt
tttatttgcgtattgaaaataagattcttttcatacaatatattctgttc
tctgtttcctctcccccaactcctcacaaatcgtccccacttccccacca
cccacatccacaccctttctttataatgagatagcacttgagtgtgtgtg
tgttttaatgagtatttatatagtgcatatgacccagcacatgtgtcgaa
gtcagagagcaacctgtgggagctggttctcttttttccatagtgagttc
aggggaatcagacttggcggcaagtgctccttacccacttggctatccta
ctaggtattcttttttttttttttttttttttgggtttttgagacaggtt
tctctgtgtagccctggctgtcctaaaactcactcctgaatacaagctgg
cttcgactcagaaatctgcctgtctctgtctccccat
gaattcacatctccagcactcatctaaaggctgagcatggtcaagggtgc
ctgtgaccccagcactgctggggcagacacagtcaagtttcagtgaaaga
tcctgtcttaaagacataaggcagccgggcgtggtagcgcacgcctttaa
tcccagctctcaggaggcagaggcaggcggatttctgagttcgaggccag
cctggtctacaaagtgagttccaggacagccagggctacacagagaaacc
ctgtctcaaaaaaccaaaaaaaaaaaaaaaaagacataaggcagaatgat
agcacaggacacccaatgttatcctctggactgtgtacgtgggcccacac
aagcaaatgcacacatttgcacacacaccacacacatgcacacacaaaaa
tcataaaaattaaaatgtgtctctcctgcgctgcagcaggactctactga
ccaccttcccgcttgtggtgtatattgtgcccctgagaacagacacgcca
gtcgtgggctggagagacaataggtagatatgccagcttccactcttaga
ccaaggggacaaacatgtctttcaaatgtagtgtcaaatggacactgggc
atgcactgggcccacagcatgaaagcagactttgtctgctttaacactgg
ccaatacagaacaagaaggtttaacctcaggctttttccactgacaccct
agttgccccaaacagtgactctgagacttactgtttatgaataaacaccc
tagaccacaagcttttggtccacttccttgacaacccagtacctttaatt
aaccaatttattctattctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53596448_53597436
seq2: B6Ng01-009E01.b_47_1032 (reverse)

seq1  TGGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTA  50
      ||||||| ||||| |||||||||||||||| |||| ||||| || || | 
seq2  TGGGGAGACAGAGACAGGCAGATTTCTGAG-TCGAAGCCAG-CTTGTATT  48

seq1  CA-GAGTGAGTTCTAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCA  99
      || ||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  CAGGAGTGAGTTTTAGGACAGCCAGGGCTACACAGAGAAA-CCTGTCTCA  97

seq1  AAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAGAATACCTAGTAGGATAG  149
      |||| ||   ||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCC---AAAAAAAAAAAAAAAAAAAAAAGAATACCTAGTAGGATAG  144

seq1  CCAAGTGGGTAAGG-GCACTTGCCGCCAAGTCTGATTCCCCTGAACTCAC  198
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCAAGTGGGTAAGGAGCACTTGCCGCCAAGTCTGATTCCCCTGAACTCAC  194

seq1  TATGG-AAAAAGAGAACCAGCTCCCACAGGTTGCTCTCTGACTTCGACAC  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAAAAAGAGAACCAGCTCCCACAGGTTGCTCTCTGACTTCGACAC  244

seq1  ATGTGCTGGGTCATATGCACTATATAAATACTCATTAAAACACACACACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGGGTCATATGCACTATATAAATACTCATTAAAACACACACACA  294

seq1  CTCAAGTGCTATCTCATTATAAAGAAAGGGTGTGGATGTGGGTGGTGGGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTGCTATCTCATTATAAAGAAAGGGTGTGGATGTGGGTGGTGGGG  344

seq1  AAGTGGGGACGATTTGTGAGGAGTTGGGGGAGAGGAAACAGAGAACAGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGGACGATTTGTGAGGAGTTGGGGGAGAGGAAACAGAGAACAGAA  394

seq1  TATATTGTATGAAAAGAATCTTATTTTCAATACGCAAATAAAAACATGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTATGAAAAGAATCTTATTTTCAATACGCAAATAAAAACATGGT  444

seq1  TTAGTTATGCAAAGAGGAAGCGGTATGAGGAAATAAAAACATTTATTAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTATGCAAAGAGGAAGCGGTATGAGGAAATAAAAACATTTATTAAA  494

seq1  GGCATCTGCAGGACAGCACCCGGAAGTGACCAGGGCATTACACTTTTAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTGCAGGACAGCACCCGGAAGTGACCAGGGCATTACACTTTTAGA  544

seq1  AGTTCTGATGTAAGCACATTGTGGCATTCGCTCATGCGTGCAGCTGAGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGATGTAAGCACATTGTGGCATTCGCTCATGCGTGCAGCTGAGGA  594

seq1  TGCTGTGCCAGGCCGGCATAGGTAGAAGATACCTCACTCCCCAACCTCAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGCCAGGCCGGCATAGGTAGAAGATACCTCACTCCCCAACCTCAT  644

seq1  CTTTCTAGCATCTTCGGATCTCAAGGGCTGGTCATACAGGAAGCAGACTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGCATCTTCGGATCTCAAGGGCTGGTCATACAGGAAGCAGACTT  694

seq1  GGGAGGTGCAGAGGAGACGGCACCAAGGGTTTCAGTCTGCTCAGAAATGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGCAGAGGAGACGGCACCAAGGGTTTCAGTCTGCTCAGAAATGG  744

seq1  AGAGAGGGTCCCTGGGATTTGAGATTTCTAGTTCATCAGAGAAGGTCCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGTCCCTGGGATTTGAGATTTCTAGTTCATCAGAGAAGGTCCCA  794

seq1  GGGCCAGCTGCTTACCCTACTTGGGGGTCAAGGTTTTGTCTAGCCTTTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGCTGCTTACCCTACTTGGGGGTCAAGGTTTTGTCTAGCCTTTCT  844

seq1  TGCCTCTGCTCTCCCGCTAAGGGGCAGACAGAGGCCTAGCTAGAATTTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCTCTCCCGCTAAGGGGCAGACAGAGGCCTAGCTAGAATTTCC  894

seq1  CCTCCAGCTCCCAGCCTAGGCTCAAAGGGCAGAAGAGGAAGGAATGAAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGCTCCCAGCCTAGGCTCAAAGGGCAGAAGAGGAAGGAATGAAGG  944

seq1  CAGACAGGCTGTCACCTCTTGAGAAAGGGCTCAGGGGAATTC  989
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGCTGTCACCTCTTGAGAAAGGGCTCAGGGGAATTC  986

seq1: chr11_53421001_53421813
seq2: B6Ng01-009E01.g_70_889

seq1  GAATTCACATCTCCAGCACTCATCTAAAGGCTGAGCATGGTCAAGGGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCTCCAGCACTCATCTAAAGGCTGAGCATGGTCAAGGGTGC  50

seq1  CTGTGACCCCAGCACTGCTGGGGCAGACACAGTCAAGTTTCAGTGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACCCCAGCACTGCTGGGGCAGACACAGTCAAGTTTCAGTGAAAGA  100

seq1  TCCTGTCTTAAAGACATAAGGCAGCCGGGCGTGGTAGCGCACGCCTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTTAAAGACATAAGGCAGCCGGGCGTGGTAGCGCACGCCTTTAA  150

seq1  TCCCAGCTCTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCTCTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAG  200

seq1  CCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACC  250

seq1  CTGTCTCAAAAAACCAAAAAAAAAAAAAAAAAGACATAAGGCAGAATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCAAAAAACCAAAAAAAAAAAAAAAAAGACATAAGGCAGAATGAT  300

seq1  AGCACAGGACACCCAATGTTATCCTCTGGACTGTGTACGTGGGCCCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGACACCCAATGTTATCCTCTGGACTGTGTACGTGGGCCCACAC  350

seq1  AAGCAAATGCACACATTTGCACACACACCACACACATGCACACACAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATGCACACATTTGCACACACACCACACACATGCACACACAAAAA  400

seq1  TCATAAAAATTAAAATGTGTCTCTCCTGCGCTGCAGCAGGACTCTACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAAATTAAAATGTGTCTCTCCTGCGCTGCAGCAGGACTCTACTGA  450

seq1  CCACCTTCCCGCTTGTGGTGTATATTGTGCCCCTGAGAACAGACACGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTCCCGCTTGTGGTGTATATTGTGCCCCTGAGAACAGACACGCCA  500

seq1  GTCGTGGGCTGGAGAGACAATAGGTAGATATGCCAGCTTCCACTCTTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGGGCTGGAGAGACAATAGGTAGATATGCCAGCTTCCACTCTTAGA  550

seq1  CCAAGGGGACAAACATGTCTTTCAAATGTAGTGTCAAATGGACACTGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGGACAAACATGTCTTTCAAATGTAGTGTCAAATGGACACTGGGC  600

seq1  ATGCACTGGGCCCACAGCATGAAAGCAGACTTTGTCTGCTTTAACACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTGGGCCCACAGCATGAAAGCAGACTTTGTCTGCTTTAACACTGG  650

seq1  CCAATACAGAACAAGAAGGTTTAACCTCAGGC-TTTTCCACTGACACCCT  699
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCAATACAGAACAAGAAGGTTTAACCTCAGGCTTTTTCCACTGACACCCT  700

seq1  AG-TGCCCAAAACAGTGACTCTGAGACTTACTGTTTATGAATAAACA-CC  747
      || ||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  AGTTGCCCCAAACAGTGACTCTGAGACTTACTGTTTATGAATAAACACCC  750

seq1  TAGACCACAAGC-TTTGGCCCAC-TCCTTGACTACCCAGTACC-TTAATT  794
      |||||||||||| ||||| |||| |||||||| |||||||||| ||||||
seq2  TAGACCACAAGCTTTTGGTCCACTTCCTTGACAACCCAGTACCTTTAATT  800

seq1  AACC-ATTTATTCTATTCTG  813
      |||| |||||||||||||||
seq2  AACCAATTTATTCTATTCTG  820