BAC Information

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BAC

Clone NameB6Ng01-009F06
Chromosome11 (Build37)
Map Location 54,441,423 - 54,591,562
singlet/doubletdoublet
Overlap geneRapgef6, Cdc42se2, LOC677786
Upstream geneIl13, LOC667731, Rad50, Il5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1
Downstream geneLOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009F06.bB6Ng01-009F06.g
ACCDH845299DH845300
length1921,111
definitionDH845299|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F06, 5' end.DH845300|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,591,371 - 54,591,562)(54,441,423 - 54,442,541)
sequence
aatgtctgggaaccacattctactgttattgagtagcatgttagtagaag
taagcatagtacattaaagtgactttatacagcatagcttttagcatttc
cctggggcctcaacatccttcccagctcctgtttagtaatgcactttcag
ggtacgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcatgagttaggggtttgggctgagactctgtcttaaaacatagtg
gagaatatttgagtaagatatccaaaattgacctttggcccacacatacc
catgtacacatgaacaataagaagtttcaagaataatacagacagctcta
agttgcatcggccccttttacatcagtcttcttttgaattgtttgagata
gtttacaaatacaatgtctcaccattcctaaagcaaaagttttcttacat
aaacaccatagagttctccaataatggaaggacacattgttaagataata
cagtcaatttgaggtccctagtaaattctcactagtggttccagtaattt
atttcttgtctggattctcatctaagaacgtagttgtatttcattgttgt
gccactttggaccactccagttgcctgatcttcttttgttattcatatcc
ccagcagacttaaagaatcttatatcctgtcacatttacccatggccaaa
ctacactcatgttttccataaaggaatatcactatgattaacactgctct
gtgtgtttggtgcagtgttgacactttcctctagggaagctaatatgatg
acctacgtccatatgcgaggatctttttttctgtgacgtcaccatttatg
acacttcataattgatgagtatctgatgaagagatgttctgagatgactc
agcatactgcctctagtttgtggatagtaacaactaagtcccacctgttt
tttattattattttatttttttattattcctgttgaaaacactgtttact
aatcctatactttctctgtcattctttatgtttgatatggctcttggtgt
cgcactcccttgccatcagtattatccagaatgctatacaggttgactca
tttgtattcttctgaaatgcccctcatcattctttgacatcagtaaggat
tattatgacttcttttttgttcctactttggaatcagccattctcagaaa
gttcttgatctttcagtagagaaaagcattataaccaggattgggaaatt
tactatattgataattgtggtccttcatgaatcagagctggaaaaaggta
ttatgttatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_54591371_54591562
seq2: B6Ng01-009F06.b_54_245 (reverse)

seq1  CACACACACACACACACACACACACACACTCACACACGTACCCTGAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACTCACACACGTACCCTGAAAGT  50

seq1  GCATTACTAAACAGGAGCTGGGAAGGATGTTGAGGCCCCAGGGAAATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACTAAACAGGAGCTGGGAAGGATGTTGAGGCCCCAGGGAAATGCT  100

seq1  AAAAGCTATGCTGTATAAAGTCACTTTAATGTACTATGCTTACTTCTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTATGCTGTATAAAGTCACTTTAATGTACTATGCTTACTTCTACT  150

seq1  AACATGCTACTCAATAACAGTAGAATGTGGTTCCCAGACATT  192
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCTACTCAATAACAGTAGAATGTGGTTCCCAGACATT  192

seq1: chr11_54441423_54442541
seq2: B6Ng01-009F06.g_70_1180

seq1  GAATTCATGAGTTAGGGGTTTGGGCTGAGACTCTGTCTTAAAACATAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGTTAGGGGTTTGGGCTGAGACTCTGTCTTAAAACATAGTG  50

seq1  GAGAATATTTGAGTAAGATATCCAAAATTGACCTTTGGCCCACACATACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATATTTGAGTAAGATATCCAAAATTGACCTTTGGCCCACACATACC  100

seq1  CATGTACACATGAACAATAAGAAGTTTCAAGAATAATACAGACAGCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACACATGAACAATAAGAAGTTTCAAGAATAATACAGACAGCTCTA  150

seq1  AGTTGCATCGGCCCCTTTTACATCAGTCTTCTTTTGAATTGTTTGAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCATCGGCCCCTTTTACATCAGTCTTCTTTTGAATTGTTTGAGATA  200

seq1  GTTTACAAATACAATGTCTCACCATTCCTAAAGCAAAAGTTTTCTTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAAATACAATGTCTCACCATTCCTAAAGCAAAAGTTTTCTTACAT  250

seq1  AAACACCATAGAGTTCTCCAATAATGGAAGGACACATTGTTAAGATAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCATAGAGTTCTCCAATAATGGAAGGACACATTGTTAAGATAATA  300

seq1  CAGTCAATTTGAGGTCCCTAGTAAATTCTCACTAGTGGTTCCAGTAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAATTTGAGGTCCCTAGTAAATTCTCACTAGTGGTTCCAGTAATTT  350

seq1  ATTTCTTGTCTGGATTCTCATCTAAGAACGTAGTTGTATTTCATTGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGTCTGGATTCTCATCTAAGAACGTAGTTGTATTTCATTGTTGT  400

seq1  GCCACTTTGGACCACTCCAGTTGCCTGATCTTCTTTTGTTATTCATATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTTGGACCACTCCAGTTGCCTGATCTTCTTTTGTTATTCATATCC  450

seq1  CCAGCAGACTTAAAGAATCTTATATCCTGTCACATTTACCCATGGCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGACTTAAAGAATCTTATATCCTGTCACATTTACCCATGGCCAAA  500

seq1  CTACACTCATGTTTTCCATAAAGGAATATCACTATGATTAACACTGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTCATGTTTTCCATAAAGGAATATCACTATGATTAACACTGCTCT  550

seq1  GTGTGTTTGGTGCAGTGTTGACACTTTCCTCTAGGGAAGCTAATATGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTGGTGCAGTGTTGACACTTTCCTCTAGGGAAGCTAATATGATG  600

seq1  ACCTACGTCCATATGCGAGGATCTTTTTTTCTGTGACGTCACCATTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACGTCCATATGCGAGGATCTTTTTTTCTGTGACGTCACCATTTATG  650

seq1  ACACTTCATAATTGATGAGTATCTGATGAAGAGATGTTCTGAGATGACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCATAATTGATGAGTATCTGATGAAGAGATGTTCTGAGATGACTC  700

seq1  AGCATACTGCCTCTAGTTTGTGGATAGTAACAACTAAGTCCCACCTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACTGCCTCTAGTTTGTGGATAGTAACAACTAAGTCCCACCTGTTT  750

seq1  TTTATTATTATTTTA-TTTTTTATTATTCCTGTTGAAAACACTGTTTTAC  799
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  TTTATTATTATTTTATTTTTTTATTATTCCTGTTGAAAACACTG-TTTAC  799

seq1  TAATCCTATACTTTCTCTGTCATTCTTTATGTTTGATATGGC-CTTGGTG  848
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAATCCTATACTTTCTCTGTCATTCTTTATGTTTGATATGGCTCTTGGTG  849

seq1  TCGCACTCCCTTGCCATCAGTATTATCCAG-ATGCTATACAGGTTGACTC  897
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCGCACTCCCTTGCCATCAGTATTATCCAGAATGCTATACAGGTTGACTC  899

seq1  ATTTGTATTCTTCTGAAATG-CCCTCATCATTCTTTGACAATCAGTAAGG  946
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  ATTTGTATTCTTCTGAAATGCCCCTCATCATTCTTTGAC-ATCAGTAAGG  948

seq1  ATTATCATGAACTTCTTTTTTGTTCCTACTCTGGAATCAGCCATTTCTCC  996
      ||||| ||| |||||||||||||||||||| |||||||||||| |||| |
seq2  ATTATTATG-ACTTCTTTTTTGTTCCTACTTTGGAATCAGCCA-TTCT-C  995

seq1  AGAAAGTTCTTGATCTTTCCAGTAGAGAATAGCATTTATAAACCAGGATC  1046
      |||||||||||||||||| |||||||||| |||| |||| ||||||||| 
seq2  AGAAAGTTCTTGATCTTT-CAGTAGAGAAAAGCA-TTAT-AACCAGGATT  1042

seq1  TGGAAATTTACTATATTGTATATTTGTGGCCCCTCATGAGTCAGAGCTAG  1096
       ||||||||||||||||| ||| |||||| || |||||| |||||||| |
seq2  GGGAAATTTACTATATTG-ATAATTGTGGTCCTTCATGAATCAGAGCTGG  1091

seq1  AAAAACAGGTATTTATGTTATCA  1119
      ||||  ||||| |||||||||||
seq2  AAAA--AGGTA-TTATGTTATCA  1111