BAC Information

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BAC

Clone NameB6Ng01-009L17
Chromosome11 (Build37)
Map Location 87,846,869 - 88,013,172
singlet/doubletdoublet
Overlap geneSfrs1, Vezf1, Cuedc1
Upstream geneGdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2
Downstream geneMrps23, 1700106J16Rik, LOC668793, Msi2, LOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009L17.bB6Ng01-009L17.g
ACCDH845597DH845598
length7151,152
definitionDH845597|Mus musculus domesticus DNA, BAC clone: B6Ng01-009L17, 5' end.DH845598|Mus musculus domesticus DNA, BAC clone: B6Ng01-009L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,012,458 - 88,013,172)(87,846,869 - 87,848,030)
sequence
gaattcacgtgccccagcttggcatcttgtgcccttacctgctgagccat
ctccttggctctagcaattgctttaaatgggaggaaagaaatagtatgta
ttcatacacagtataagaattatagggttgcacaacctggactacataat
gtgttccaagccagcttggcttggactgcagaaagagaccctgtcttaaa
acacacacacacacacacacacacacacacacacacacacacacacaccc
ctctactaaggtgaggagggcacaaggcagggaagggagggtgtggtccc
cttgctcttctccaggctgtggagtccctggctttctttctagctaagca
tgccctctagggtgcccatgtctgcagtccccaccatacccagccacatg
ctgttagtgctccaacatagtctttccctctcaattctgtctgtttactt
gtctgagtctatctccctgggcctctttcggggcagggcttaccactggt
tcttagtgagttttctagtgaacagcatggataaataaagccaagtcagg
acaaatgagggtgtagtgaccacaggccacttatgcctgcctgcctgcct
gcctgcctgcctgcacacatcttgcatggccacctgagccctttgaggcc
ttgccaaaacacagtctatgtggaggcattttcctactccaccatgcatt
gagtgtgtccttcac
gaattctgctgagtctcgtcccactcttgggaaaggagaggtgtcaaacc
tgaggtacagacatggtgagggatggactagagtttgggggcaaaggtga
cagtgcaggttgatgtagtgaagcagccaggtttccattgttctgacaaa
ataactgagcaaaagaacttaaggaagaaaagtatgatttatttatttag
actgttcgcaggcttagtccataactggctggtttcaatgctatgggtct
gagatgaggctcacatcatggtggggagcacgtgctggagtgcccaattt
accttatggcagatgaggaaaagatgaaaggaggaaaggcaggagggaac
aatatacattttcccagcgtgtaccagttaccttcttccaactaggcacc
tgcctttcatcacctcccaggaatgacaatcacattttgatttttttttt
cccccagagctgaggaccaaacccagggccttgcgcttgctaggcaagtg
ctctaccactgagctaaatccccacccctgacatcacattttgaacacac
caaacatataatgcaccaaaccggtcatgcccttgtggtctaatcacttc
ccagaagcctccactggcccccactgctttgagcctgtaggggacatttc
agagtcaaattatatgagctagcaatgtggttcagttggtaaagtgcttg
cctactgtgcacaaagccttggtttctatcttcagtgccatataaaccag
gcacgatgattgacacctgtaatcccagccccagaggtggaagcagaaag
actaagagtttaagatcattcatcttacatcatgagctcaaggccagcct
gggatacatgagattggcgccccaccaccacccctcaaaactcattatat
tcacaccctaacatctggcacgactgcaggttttccatagagcacagctt
gagggataagatgatctcggtcagcacagttaaagtgatggccagattct
taaggctagagagtaagaatgagctcaaggatgatgtcttgtcttaaatg
caaggtttctaatggaagacctaaagcatcctcagagtgtaccaattatc
ccctggccaggtcatcactcgtcatgcctgatcctcaggccaggaagaag
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88012458_88013172
seq2: B6Ng01-009L17.b_41_755 (reverse)

seq1  GTGAAGGACACACTCAATGCATGGTGGGGTAGGAAAATGCCTCCACATAG  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGAAGGACACACTCAATGCATGGTGGAGTAGGAAAATGCCTCCACATAG  50

seq1  ACTGTGTTTTGGCAAGGCCTCAAAGGGCTCAGGTGGCCATGCAAGATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTTTGGCAAGGCCTCAAAGGGCTCAGGTGGCCATGCAAGATGTG  100

seq1  TGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCATAAGTGGCCTGTGGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCAGGCAGGCAGGCAGGCAGGCAGGCATAAGTGGCCTGTGGTCAC  150

seq1  TACACCCTCATTTGTCCTGACTTGGCTTTATTTATCCATGCTGTTCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCTCATTTGTCCTGACTTGGCTTTATTTATCCATGCTGTTCACTA  200

seq1  GAAAACTCACTAAGAACCAGTGGTAAGCCCTGCCCCGAAAGAGGCCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCACTAAGAACCAGTGGTAAGCCCTGCCCCGAAAGAGGCCCAGG  250

seq1  GAGATAGACTCAGACAAGTAAACAGACAGAATTGAGAGGGAAAGACTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGACTCAGACAAGTAAACAGACAGAATTGAGAGGGAAAGACTATG  300

seq1  TTGGAGCACTAACAGCATGTGGCTGGGTATGGTGGGGACTGCAGACATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCACTAACAGCATGTGGCTGGGTATGGTGGGGACTGCAGACATGG  350

seq1  GCACCCTAGAGGGCATGCTTAGCTAGAAAGAAAGCCAGGGACTCCACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTAGAGGGCATGCTTAGCTAGAAAGAAAGCCAGGGACTCCACAGC  400

seq1  CTGGAGAAGAGCAAGGGGACCACACCCTCCCTTCCCTGCCTTGTGCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAAGAGCAAGGGGACCACACCCTCCCTTCCCTGCCTTGTGCCCTC  450

seq1  CTCACCTTAGTAGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTTAGTAGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  500

seq1  TGTGTGTGTGTGTGTTTTAAGACAGGGTCTCTTTCTGCAGTCCAAGCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTTTTAAGACAGGGTCTCTTTCTGCAGTCCAAGCCAA  550

seq1  GCTGGCTTGGAACACATTATGTAGTCCAGGTTGTGCAACCCTATAATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTGGAACACATTATGTAGTCCAGGTTGTGCAACCCTATAATTCT  600

seq1  TATACTGTGTATGAATACATACTATTTCTTTCCTCCCATTTAAAGCAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTGTATGAATACATACTATTTCTTTCCTCCCATTTAAAGCAATT  650

seq1  GCTAGAGCCAAGGAGATGGCTCAGCAGGTAAGGGCACTTGATGCCAAGCT  700
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  GCTAGAGCCAAGGAGATGGCTCAGCAGGTAAGGGCACAAGATGCCAAGCT  700

seq1  GGGGCACGTGAATTC  715
      |||||||||||||||
seq2  GGGGCACGTGAATTC  715

seq1: chr11_87846869_87848030
seq2: B6Ng01-009L17.g_69_1220

seq1  GAATTCTGCTGAGTCTCGTCCCACTCTTGGGAAAGGAGAGGTGTCAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGAGTCTCGTCCCACTCTTGGGAAAGGAGAGGTGTCAAACC  50

seq1  TGAGGTACAGACATGGTGAGGGATGGACTAGAGTTTGGGGGCAAAGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTACAGACATGGTGAGGGATGGACTAGAGTTTGGGGGCAAAGGTGA  100

seq1  CAGTGCAGGTTGATGTAGTGAAGCAGCCAGGTTTCCATTGTTCTGACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGGTTGATGTAGTGAAGCAGCCAGGTTTCCATTGTTCTGACAAA  150

seq1  ATAACTGAGCAAAAGAACTTAAGGAAGAAAAGTATGATTTATTTATTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGAGCAAAAGAACTTAAGGAAGAAAAGTATGATTTATTTATTTAG  200

seq1  ACTGTTCGCAGGCTTAGTCCATAACTGGCTGGTTTCAATGCTATGGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCGCAGGCTTAGTCCATAACTGGCTGGTTTCAATGCTATGGGTCT  250

seq1  GAGATGAGGCTCACATCATGGTGGGGAGCACGTGCTGGAGTGCCCAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGGCTCACATCATGGTGGGGAGCACGTGCTGGAGTGCCCAATTT  300

seq1  ACCTTATGGCAGATGAGGAAAAGATGAAAGGAGGAAAGGCAGGAGGGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATGGCAGATGAGGAAAAGATGAAAGGAGGAAAGGCAGGAGGGAAC  350

seq1  AATATACATTTTCCCAGCGTGTACCAGTTACCTTCTTCCAACTAGGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACATTTTCCCAGCGTGTACCAGTTACCTTCTTCCAACTAGGCACC  400

seq1  TGCCTTTCATCACCTCCCAGGAATGACAATCACATTTTGATTTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCATCACCTCCCAGGAATGACAATCACATTTTGATTTTTTTTTT  450

seq1  CCCCCAGAGCTGAGGACCAAACCCAGGGCCTTGCGCTTGCTAGGCAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGAGCTGAGGACCAAACCCAGGGCCTTGCGCTTGCTAGGCAAGTG  500

seq1  CTCTACCACTGAGCTAAATCCCCACCCCTGACATCACATTTTGAACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCACTGAGCTAAATCCCCACCCCTGACATCACATTTTGAACACAC  550

seq1  CAAACATATAATGCACCAAACCGGTCATGCCCTTGTGGTCTAATCACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATATAATGCACCAAACCGGTCATGCCCTTGTGGTCTAATCACTTC  600

seq1  CCAGAAGCCTCCACTGGCCCCCACTGCTTTGAGCCTGTAGGGGACATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCCTCCACTGGCCCCCACTGCTTTGAGCCTGTAGGGGACATTTC  650

seq1  AGAGTCAAATTATATGAGCTAGCAATGTGGTTCAGTTGGTAAAGTGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAAATTATATGAGCTAGCAATGTGGTTCAGTTGGTAAAGTGCTTG  700

seq1  CCTACTGTGCACAAAGCCTTGGTTTCTATCTTCAGTGCCATATAAACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGTGCACAAAGCCTTGGTTTCTATCTTCAGTGCCATATAAACCAG  750

seq1  GCACGATGATTGACACCTGTAATCCCAGCCCCAGGAGGTGGAAGCAGAAA  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCACGATGATTGACACCTGTAATCCCAGCCCCA-GAGGTGGAAGCAGAAA  799

seq1  GACTAAGAGTTCAAGATCATTCATCATTACATCATGAGCTCAAGGCCAGC  850
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  GACTAAGAGTTTAAGATCATTCATC-TTACATCATGAGCTCAAGGCCAGC  848

seq1  CTGGGATACATGAGATTGGCGCCCCACCACCACCCCCCAAAACCCATCAT  900
      |||||||||||||||||||||||||||||||||||| |||||| ||| ||
seq2  CTGGGATACATGAGATTGGCGCCCCACCACCACCCCTCAAAACTCATTAT  898

seq1  ATTCACACCCTAACATCTGGCACGACTGCAGGTTTTACATAAGAGCACAG  950
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  ATTCACACCCTAACATCTGGCACGACTGCAGGTTTTCCAT-AGAGCACAG  947

seq1  CTTGGAGGGATAAGATGATCTCGGCCAGCAGCAGTTAAAGTGATGGCCAG  1000
      ||| |||||||||||||||||||| ||||| |||||||||||||||||||
seq2  CTT-GAGGGATAAGATGATCTCGGTCAGCA-CAGTTAAAGTGATGGCCAG  995

seq1  ATTCTTAAGGCTAGAGAAGTAAGAAATGAGCCCAAGGATGATGTCT--GC  1048
      |||||||||||||||| |||||| ||||||| ||||||||||||||   |
seq2  ATTCTTAAGGCTAGAG-AGTAAG-AATGAGCTCAAGGATGATGTCTTGTC  1043

seq1  CTAAAT-CGAGGTCTCAGTAATGAGAGAACATAAAGCACCCACAGAAGTG  1097
       ||||| | |||| ||  ||||| ||  || ||||||| || ||| ||||
seq2  TTAAATGCAAGGTTTC--TAATG-GAAGACCTAAAGCATCCTCAG-AGTG  1089

seq1  TCAGCAATAAACACCTGCCAAGTGCAGCAACCGTCAATGCCAGATCCTCA  1147
      | | |||| | | |||| | ||  || ||  |||| ||||| ||||||||
seq2  T-ACCAATTATCCCCTGGCCAGGTCATCACTCGTC-ATGCCTGATCCTCA  1137

seq1  GGCCAGGACGAAGCC  1162
      |||||||| ||||||
seq2  GGCCAGGAAGAAGCC  1152