BAC Information

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BAC

Clone NameB6Ng01-010C07
Chromosome11 (Build37)
Map Location 74,021,326 - 74,165,415
singlet/doubletdoublet
Overlap geneOlfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411
Upstream geneCarkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43
Downstream geneOlfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010C07.bB6Ng01-010C07.g
ACCDH845899DH845900
length6041,069
definitionDH845899|Mus musculus domesticus DNA, BAC clone: B6Ng01-010C07, 5' end.DH845900|Mus musculus domesticus DNA, BAC clone: B6Ng01-010C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,021,326 - 74,021,929)(74,164,337 - 74,165,415)
sequence
gaattcaagtcctactagctaaaacccagtgaatgttcctcccaggtgtc
ccattcacaaagtagacattttctgtctcctctggtttccctttggtagc
ctttcaattacacacaacattgtactttctctcttctctgcctattctta
tttattttgctaccaccactgcttcataaactctccactctatttctgta
gtctcaattgtcttataacataaaacataggctaggccatcatgtttttc
tactggtaatgttgtaatatttctttaacttattcaccagtctcttccaa
tttcccttatcttttgctctcagacattaattatagtagagactactagc
tacttggtgatattcatgccatcctcttcttaatcatcaacttcaactac
atttactcatctcctttgcagagaggtgcagtgaggtgcagtcatgtgac
agagttctagcaaatccaactatgtgttctacttgggagctttcatcaca
ctacagtactaatagtttgaaaatattgaagaagttgaatgagatgatat
tgttacataatgagattatcctatgtcaataggagagggagagggggagg
ggga
gaattcttcctaatgagtccttagaaacatctcatagaaacaaagattaa
aaaatcccacagcagtgcatctgtgcctttcactcaagcttgtacttcct
ataaacacatcactttctcattttgcatagtttctggctcagccaagaga
cctcctcagccccttcagcccagtccagtgtcccttctcactgaagtcat
gttggtctcgtggctttagttctaaagttcattcagcatttattttggaa
atactgaaaatctactgcatataaactaggtattgagaatatgaagctaa
gacagctgaatgtcttccctcccataagccatgaaggaacacagctgtgt
cctacagagaagtggccatacaagagggtggcagagacaaagatgctaga
gtaggttagcgggaagcagtggaaagcagggtgacccccataggggatgt
gtattttcattcaaaaaagtttagagttaggaataagaaatcattctaga
tgaaacagttgtggatagaagaaacaaaagagcactttgtaattttagtt
agactgtattgcagagagcaagcaggaggtactttatgctttggtttttt
gatatgccttggagttatcttactcccattagtatgccaattcttgtgac
acatatggaataacttctaggtctatggttaggatccacaagatgaccca
gtgaatgtgaccattgatttaaggggattttagacaatgtaagagttagc
aaattgtgttaccctaccttactcacagacacagcagacacatagtcact
atattgtggacccttcattttggattttgattggcactctgccaaggatc
cctgtgcccatatctgctgctttaactaagttgtatatagaaaattaact
gtatagttagggtgtgtcttcagtgtctagcacagtagttctcaatctat
ggatcatgtccctttgggcttccatatcagaaatttgtgtatcagatatt
aaatatgattaatgaaagcagcaagttacggagaaatagcaactataaat
ttatgtttggaggtcacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_74021326_74021929
seq2: B6Ng01-010C07.b_34_637

seq1  GAATTCAAGTCCTACTAGCTAAAACCCAGTGAATGTTCCTCCCAGGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCCTACTAGCTAAAACCCAGTGAATGTTCCTCCCAGGTGTC  50

seq1  CCATTCACAAAGTAGACATTTTCTGTCTCCTCTGGTTTCCCTTTGGTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCACAAAGTAGACATTTTCTGTCTCCTCTGGTTTCCCTTTGGTAGC  100

seq1  CTTTCAATTACACACAACATTGTACTTTCTCTCTTCTCTGCCTATTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATTACACACAACATTGTACTTTCTCTCTTCTCTGCCTATTCTTA  150

seq1  TTTATTTTGCTACCACCACTGCTTCATAAACTCTCCACTCTATTTCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTGCTACCACCACTGCTTCATAAACTCTCCACTCTATTTCTGTA  200

seq1  GTCTCAATTGTCTTATAACATAAAACATAGGCTAGGCCATCATGTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAATTGTCTTATAACATAAAACATAGGCTAGGCCATCATGTTTTTC  250

seq1  TACTGGTAATGTTGTAATATTTCTTTAACTTATTCACCAGTCTCTTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTAATGTTGTAATATTTCTTTAACTTATTCACCAGTCTCTTCCAA  300

seq1  TTTCCCTTATCTTTTGCTCTCAGACATTAATTATAGTAGAGACTACTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTATCTTTTGCTCTCAGACATTAATTATAGTAGAGACTACTAGC  350

seq1  TACTTGGTGATATTCATGCCATCCTCTTCTTAATCATCAACTTCAACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGTGATATTCATGCCATCCTCTTCTTAATCATCAACTTCAACTAC  400

seq1  ATTTACTCATCTCCTTTGCAGAGAGGTGCAGTGAGGTGCAGTCATGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTCATCTCCTTTGCAGAGAGGTGCAGTGAGGTGCAGTCATGTGAC  450

seq1  AGAGTTCTAGCAAATCCAACTATGTGTTCTACTTGGGAGCTTTCATCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCTAGCAAATCCAACTATGTGTTCTACTTGGGAGCTTTCATCACA  500

seq1  CTACAGTACTAATAGTTTGAAAATATTGAAGAAGTTGAATGAGATGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTACTAATAGTTTGAAAATATTGAAGAAGTTGAATGAGATGATAT  550

seq1  TGTTACATAATGAGATTATCCTATGTCAATAGGAGAGGGAGAGGGGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATAATGAGATTATCCTATGTCAATAGGAGAGGGAGAGGGGGAGG  600

seq1  GGGA  604
      ||||
seq2  GGGA  604

seq1: chr11_74164337_74165415
seq2: B6Ng01-010C07.g_68_1136 (reverse)

seq1  TGGTGACCTCCAAACATAAAATTATTATGTTGCTATTTCATACCCGTAAC  50
      |||||||||||||||||||| ||||   |||||||||||    |||||||
seq2  TGGTGACCTCCAAACATAAATTTAT--AGTTGCTATTTC---TCCGTAAC  45

seq1  TTTGCTGCTTTCATAAATCATAATGTAAATATCTGATACACAAAGTGTCT  100
       ||||||||||||| |||||||   | ||||||||||||||||| | |||
seq2  -TTGCTGCTTTCATTAATCATA--TTTAATATCTGATACACAAA-TTTCT  91

seq1  GATATGTGAGCCCAAAGGGGACATGATCCATAGATTGAGAACTACTGTGC  150
      ||||||  |||||||| |||||||||||||||||||||||||||||||||
seq2  GATATGGAAGCCCAAA-GGGACATGATCCATAGATTGAGAACTACTGTGC  140

seq1  TAGACACTGAAGACACACCCTAACTATACAGTTAATTTTCTATATACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACTGAAGACACACCCTAACTATACAGTTAATTTTCTATATACAAC  190

seq1  TTAGTTAAAGCAGCAGATATGGGCACAGGGATCCTTGGCAGAGTGCCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAAAGCAGCAGATATGGGCACAGGGATCCTTGGCAGAGTGCCAAT  240

seq1  CAAAATCCAAAATGAAGGGTCCACAATATAGTGACTATGTGTCTGCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCCAAAATGAAGGGTCCACAATATAGTGACTATGTGTCTGCTGTG  290

seq1  TCTGTGAGTAAGGTAGGGTAACACAATTTGCTAACTCTTACATTGTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGTAAGGTAGGGTAACACAATTTGCTAACTCTTACATTGTCTAA  340

seq1  AATCCCCTTAAATCAATGGTCACATTCACTGGGTCATCTTGTGGATCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCTTAAATCAATGGTCACATTCACTGGGTCATCTTGTGGATCCTA  390

seq1  ACCATAGACCTAGAAGTTATTCCATATGTGTCACAAGAATTGGCATACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGACCTAGAAGTTATTCCATATGTGTCACAAGAATTGGCATACTA  440

seq1  ATGGGAGTAAGATAACTCCAAGGCATATCAAAAAACCAAAGCATAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGTAAGATAACTCCAAGGCATATCAAAAAACCAAAGCATAAAGTA  490

seq1  CCTCCTGCTTGCTCTCTGCAATACAGTCTAACTAAAATTACAAAGTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCTTGCTCTCTGCAATACAGTCTAACTAAAATTACAAAGTGCTC  540

seq1  TTTTGTTTCTTCTATCCACAACTGTTTCATCTAGAATGATTTCTTATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTCTTCTATCCACAACTGTTTCATCTAGAATGATTTCTTATTCC  590

seq1  TAACTCTAAACTTTTTTGAATGAAAATACACATCCCCTATGGGGGTCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTAAACTTTTTTGAATGAAAATACACATCCCCTATGGGGGTCACC  640

seq1  CTGCTTTCCACTGCTTCCCGCTAACCTACTCTAGCATCTTTGTCTCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCCACTGCTTCCCGCTAACCTACTCTAGCATCTTTGTCTCTGCC  690

seq1  ACCCTCTTGTATGGCCACTTCTCTGTAGGACACAGCTGTGTTCCTTCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTTGTATGGCCACTTCTCTGTAGGACACAGCTGTGTTCCTTCATG  740

seq1  GCTTATGGGAGGGAAGACATTCAGCTGTCTTAGCTTCATATTCTCAATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGGGAGGGAAGACATTCAGCTGTCTTAGCTTCATATTCTCAATAC  790

seq1  CTAGTTTATATGCAGTAGATTTTCAGTATTTCCAAAATAAATGCTGAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTATATGCAGTAGATTTTCAGTATTTCCAAAATAAATGCTGAATG  840

seq1  AACTTTAGAACTAAAGCCACGAGACCAACATGACTTCAGTGAGAAGGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAGAACTAAAGCCACGAGACCAACATGACTTCAGTGAGAAGGGAC  890

seq1  ACTGGACTGGGCTGAAGGGGCTGAGGAGGTCTCTTGGCTGAGCCAGAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACTGGGCTGAAGGGGCTGAGGAGGTCTCTTGGCTGAGCCAGAAAC  940

seq1  TATGCAAAATGAGAAAGTGATGTGTTTATAGGAAGTACAAGCTTGAGTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAAATGAGAAAGTGATGTGTTTATAGGAAGTACAAGCTTGAGTGA  990

seq1  AAGGCACAGATGCACTGCTGTGGGATTTTTTAATCTTTGTTTCTATGAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACAGATGCACTGCTGTGGGATTTTTTAATCTTTGTTTCTATGAGA  1040

seq1  TGTTTCTAAGGACTCATTAGGAAGAATTC  1079
      |||||||||||||||||||||||||||||
seq2  TGTTTCTAAGGACTCATTAGGAAGAATTC  1069