BAC Information

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BAC

Clone NameB6Ng01-010H01
Chromosome11 (Build37)
Map Location 27,425,232 - 27,425,987
singlet/doubletsinglet
Overlap geneLOC100042377
Upstream geneVrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneEG626571, Ccdc85a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010H01.bB6Ng01-010H01.g
ACCDH846108DH846109
length1,150759
definitionDH846108|Mus musculus domesticus DNA, BAC clone: B6Ng01-010H01, 5' end.DH846109|Mus musculus domesticus DNA, BAC clone: B6Ng01-010H01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaagt
gttcaacatccttaatcatcagggaaatgcaaatcaaaacgaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacaa
cagatgcttttgaggatgtggagaaagaggaacactcgtccattgttggt
gggattgcacggttctacaacgactctggaaatctttctggtggttcctc
agaaaattggacatagtactaccacaggatcccacaatacctctcttggt
catatatctagaagatgttccaactggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatatccagaagctggaaagaacccgga
tgccccttaagagaggaatggatacagaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctagtca
aatggatggacttggagggcatcatcctgagtgcagcaaccaattacaaa
agaactcaaacaataagtactcactgataattggatattagcccagaaac
ttagaatacccaagatataagttacaatttattaaacacatgaaactcaa
gaagaatgaagaccaaagtgtggacagtttgccccttcttagaattggaa
acaatctcccatggaaggagttacggagacaaagtttggagctgaaatga
aaggatggaccatttagtgactaccatacccggggatccatcccataatc
agcctccaaatgctgacaccattgcatacactagtagattttgctgaaag
gacccagatatagctgtctcttgtgagactatgctggggcctagcaaaca
cagaagtgttgctcacagtcagctattggatggatcacatggcccccaat
ggaggatctagacaagtaccagagctaaagggactgcaccctatagttga
ccacattatgactaccagtaccccagagcttgtgtctctgcttcatagta
tcagagttggctaattgccatcagtgaagagatgcctatgtcggctactt
tatctccctagtacaaggaaagtcaggccaagattgatatgcgtgttgga

gaattcctccttaggaatgctggaaacttgtctcctgcatttcctctctt
ttatcaccattggccacaacagtcttagaaactttattttacttattctg
gaacaacatttcttttccatatcttggagtctttcccaaacacagctcac
ttttaaagatgaacctttcactgcataattgcatattatcttaattcagt
tctggatatattttttcagttttcccagatgactgatttatttgggtctc
ctttctccatgcacaaccctgccacttttatcctcagattaccatgtgtt
ttaactttcacattcaacatattgcctaatatgggatggggtttaagata
ttgaggaggacacatgatctcacagaagaaagggttcctttagaacaagt
ggaagtactgttttctaaaagcaatggcctacctctactggtcaaggaac
tagaatctggtgttgcataaattttaaggacttgaaaccagatgacctca
ttgatctgtgcattgcaacctcattgcaactgtggttctctctctctctc
tctctctctctctctctctctctctctctctctctctctctctgtgtgtg
tgcttgtttatttctcacgctcactcacacttattaaatatatatctgta
taaatgtgaggggtgagatgaaaggagacatctcacaatatctttttttt
gttttttcccccctcctccaaaacaaagaaaaacaaaaaaaaaaagtact
tctgtgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_27425232_27425987
seq2: B6Ng01-010H01.g_65_823

seq1  GAATTCCTCCTTAGGAATGCTGGAAACTTGTCTCCTGCATTTCCTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTTAGGAATGCTGGAAACTTGTCTCCTGCATTTCCTCTCTT  50

seq1  TTATCACCATTGGCCACAACAGTCTTAGAAACTTTATTTTACTTATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACCATTGGCCACAACAGTCTTAGAAACTTTATTTTACTTATTCTG  100

seq1  GAACAACATTTCTTTTCCATATCTTGGAGTCTTTCCCAAACACAGCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACATTTCTTTTCCATATCTTGGAGTCTTTCCCAAACACAGCTCAC  150

seq1  TTTTAAAGATGAACCTTTCACTGCATAATTGCATATTATCTTAATTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGATGAACCTTTCACTGCATAATTGCATATTATCTTAATTCAGT  200

seq1  TCTGGATATATTTTTTCAGTTTTCCCAGATGACTGATTTATTTGGGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATATATTTTTTCAGTTTTCCCAGATGACTGATTTATTTGGGTCTC  250

seq1  CTTTCTCCATGCACAACCCTGCCACTTTTATCCTCAGATTACCATGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCATGCACAACCCTGCCACTTTTATCCTCAGATTACCATGTGTT  300

seq1  TTAACTTTCACATTCAACATATTGCCTAATATGGGATGGGGTTTAAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTCACATTCAACATATTGCCTAATATGGGATGGGGTTTAAGATA  350

seq1  TTGAGGAGGACACATGATCTCACAGAAGAAAGGGTTCCTTTAGAACAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAGGACACATGATCTCACAGAAGAAAGGGTTCCTTTAGAACAAGT  400

seq1  GGAAGTACTGTTTTCTAAAAGCAATGGCCTACCTCTACTGGTCAAGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTACTGTTTTCTAAAAGCAATGGCCTACCTCTACTGGTCAAGGAAC  450

seq1  TAGAATCTGGTGTTGCATAAATTTTAAGGACTTGAAACCAGATGACCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCTGGTGTTGCATAAATTTTAAGGACTTGAAACCAGATGACCTCA  500

seq1  TTGATCTGTGCATTGCAACCTCATTGCAACTGTGGTTCTCTCTCTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTGTGCATTGCAACCTCATTGCAACTGTGGTTCTCTCTCTCTCTC  550

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTGTGTGTG  600
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTG  600

seq1  TGCATGTTTATTTCTCAAGCTTTCTCAAGCTTAATGAAATATCTATCCAT  650
      ||| ||||||||||||| |||  ||||  ||| || |||||| ||||  |
seq2  TGCTTGTTTATTTCTCACGCTCACTCACACTT-ATTAAATATATATCTGT  649

seq1  TGAAAGCTG-TTGGTGATTTGATAGCAGTCATCTCTAAATATCAATATAA  699
        |||  ||   |||||  ||| || || ||||||  ||||||  | |  
seq2  ATAAATGTGAGGGGTGAGATGAAAGGAGACATCTCACAATATCTTTTTTT  699

seq1  AGTTATTTGCATCCTAATGGAGACCTGGG---AGTCATAATGTGAAGTAC  746
       ||| ||| |  |||  |  | | |   |   |   | ||    ||||||
seq2  TGTTTTTTCCCCCCTCCTCCAAAACAAAGAAAAACAAAAAAAAAAAGTAC  749

seq1  TTCTGTGAAA  756
      ||||||||||
seq2  TTCTGTGAAA  759