BAC Information

Click to search

BAC

Clone NameB6Ng01-010M14
Chromosome11 (Build37)
Map Location 69,087,324 - 69,202,176
singlet/doubletdoublet
Overlap geneCntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3
Upstream geneNtn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e
Downstream geneCyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010M14.bB6Ng01-010M14.g
ACCDH846354DH846355
length5861,129
definitionDH846354|Mus musculus domesticus DNA, BAC clone: B6Ng01-010M14, 5' end.DH846355|Mus musculus domesticus DNA, BAC clone: B6Ng01-010M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,087,324 - 69,087,915)(69,201,039 - 69,202,176)
sequence
ctagagctcattgctagccagtccagttcactgagttccaggttcagtga
aaaacctctgcctcaaaaaaaaaagaaaaagaaaaacgaaaggaagggag
ggaggaagagagagagaggagagagagagagaaaaaaaagctgggtggtt
agatctctaacttcgaggccagcctgctctacaaagtgagtttcaggaca
gctagggctacacagagaaaccttgtctcaaaaactaaaacaacaacaac
aataaatataataatgatgagatgcagtgcagtggaagaagacacctcac
atcagcccacacagcaggtaagtacatacctgcatataaacatacatacc
actcagtcaaaaatacactttcaaaaagcaaaactgaaaaagatttgtat
gtacttcatggaacttatttgtaataaaattaaaaatttaaatgttgagc
caggcgtggtggcgcacacttttaatcccagcactcgggaggcataggca
ggcggatttctgagttcgaggccaacctggtctacaaagtgagttccagg
acagccagggctatacagataaaccctgtctcaaaa
gaattcctaatttttttggtttttcgagacagggtttctctgtatagccc
tggctgtcctggaactcactttgtagaccaggctggcctcgaactcagaa
atcctcctgcctctgcctcccgagtgctgggattaaaggtgtgcgccact
acacccaactctctcctagagtttttttgatctggttgtgtcttgtagcc
aaggctcaaatgtttctggctcatttaggctggagactatataaggccca
ggcatgacatctggataaggttgctgcatccatattcaaaggtgatctag
tggagagcacacagttgtgttgttactagaacagcatcctatgacaggtc
agcgagagtgcatgaggagtgcaagaaagcagagcctgaaacctaaggga
cccaatggtcctcctctcagagaccaaacagatatgcaaagtactgggca
tgggtactgtaagcacataggaaacactataaaacaaagctcaagtgtga
ataaatgagggggcactgataaatggggtcagaaaagactgtcaagggac
tgctccaaccacatgtcttcctggcccagagctgtgctatctagtgccct
cagagaatactgctcagtgggaactcagctgtccacccagatcatccctg
tgtgcccaataatcgtacagtgcctggcccaggattttaacaaggaagtg
ctcatgtcaggaatgaacattactagtgtgaggagctggctcagcagttc
agagcacttactgcccttgcagaagaccagggttcaattcccaggacccg
aatggtagttcacaagcatccataactgcagttccaggggactttgatgc
tgtcttctggcctgaggggactagcacacagtggtgcgcatacatccttg
cagacaaggaattcacacatataaataaatcagaaacagtttagaagcgt
gaagttaccgtacactcctacctttaagtcatatgaaccagagcaaagtg
tcccttctagtcagttccttccctgattgacagtctggataggagtgaga
ggcgccttgatgaactgctgttctttcttagggctttactactgtgaacc
gacacattaactagggcaactctttaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_69087324_69087915
seq2: B6Ng01-010M14.b_40_631

seq1  GAATTCCTAGAGCTCATTGCTAGCCAGTCCAGTTCACTGAGTTCCAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGAGCTCATTGCTAGCCAGTCCAGTTCACTGAGTTCCAGGTT  50

seq1  CAGTGAAAAACCTCTGCCTCAAAAAAAAAAGAAAAAGAAAAACGAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAAAACCTCTGCCTCAAAAAAAAAAGAAAAAGAAAAACGAAAGGA  100

seq1  AGGGAGGGAGGAAGAGAGAGAGAGGAGAGAGAGAGAGAAAAAAAAGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGAGGAAGAGAGAGAGAGGAGAGAGAGAGAGAAAAAAAAGCTGG  150

seq1  GTGGTTAGATCTCTAACTTCGAGGCCAGCCTGCTCTACAAAGTGAGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAGATCTCTAACTTCGAGGCCAGCCTGCTCTACAAAGTGAGTTTC  200

seq1  AGGACAGCTAGGGCTACACAGAGAAACCTTGTCTCAAAAACTAAAACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCTAGGGCTACACAGAGAAACCTTGTCTCAAAAACTAAAACAAC  250

seq1  AACAACAATAAATATAATAATGATGAGATGCAGTGCAGTGGAAGAAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAATAAATATAATAATGATGAGATGCAGTGCAGTGGAAGAAGACA  300

seq1  CCTCACATCAGCCCACACAGCAGGTAAGTACATACCTGCATATAAACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACATCAGCCCACACAGCAGGTAAGTACATACCTGCATATAAACATA  350

seq1  CATACCACTCAGTCAAAAATACACTTTCAAAAAGCAAAACTGAAAAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCACTCAGTCAAAAATACACTTTCAAAAAGCAAAACTGAAAAAGAT  400

seq1  TTGTATGTACTTCATGGAACTTATTTGTAATAAAATTAAAAATTTAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGTACTTCATGGAACTTATTTGTAATAAAATTAAAAATTTAAATG  450

seq1  TTGAGCCAGGCGTGGTGGCGCACACTTTTAATCCCAGCACTCGGGAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCAGGCGTGGTGGCGCACACTTTTAATCCCAGCACTCGGGAGGCA  500

seq1  GAGGCAGGCGGATTTCTGAGTTCGAGGCCAACCTGGTCTACAAAGTGAGT  550
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGGCGGATTTCTGAGTTCGAGGCCAACCTGGTCTACAAAGTGAGT  550

seq1  TCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAA  592
      ||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCAGGACAGCCAGGGCTATACAGATAAACCCTGTCTCAAAA  592

seq1: chr11_69201039_69202176
seq2: B6Ng01-010M14.g_66_1194 (reverse)

seq1  CCTTATAAGAGTTGCCTTGGTCATGGTGTCTGTTCACAGTAGTAAAGCCC  50
      ||||| |||||||||| | || |  ||||| |||||||||||||||||||
seq2  CCTTA-AAGAGTTGCCCTAGTTAATGTGTCGGTTCACAGTAGTAAAGCCC  49

seq1  TAAGAAAGACAGGCAGTTCATCAGTGCGCCTCTCACTTCCTATCCAGACT  100
      |||||||||   |||||||||||  ||||||||||| |||||||||||||
seq2  TAAGAAAGAACAGCAGTTCATCAAGGCGCCTCTCAC-TCCTATCCAGACT  98

seq1  GTCAATCAGGGGAAGGAACTGGCTAGGAAGGGACACTTTGCTCTTGGGTT  150
      |||||||| |||||||||||| ||| ||||||||||||||||||  ||||
seq2  GTCAATCA-GGGAAGGAACTGACTA-GAAGGGACACTTTGCTCT--GGTT  144

seq1  CATATGGACTTAAAGGTAGGAGTTGTACGGTAACTTCACGCTTCCTAAAC  200
      ||||| |||||||||||||||| |||||||||||||||||||| ||||||
seq2  CATAT-GACTTAAAGGTAGGAG-TGTACGGTAACTTCACGCTT-CTAAAC  191

seq1  TGTTTCTGATTTATTTTATATGTGTGAATTCCTTGTCTGCAAGGATGTAT  250
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGATTTA-TTTATATGTGTGAATTCCTTGTCTGCAAGGATGTAT  240

seq1  GCGCACCACTGTGTGCTAGTCCCCTCAGGCCAGAAGACAGCATC-AAGTC  299
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCGCACCACTGTGTGCTAGTCCCCTCAGGCCAGAAGACAGCATCAAAGTC  290

seq1  CCCTGGAACTGCAGTTATGGATGCTTGTGAACTACCATTCGGGTCCTGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAACTGCAGTTATGGATGCTTGTGAACTACCATTCGGGTCCTGGG  340

seq1  AATTGAACCCTGGTCTTCTGCAAGGGCAGTAAGTGCTCTGAACTGCTGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACCCTGGTCTTCTGCAAGGGCAGTAAGTGCTCTGAACTGCTGAG  390

seq1  CCAGCTCCTCACACTAGTAATGTTCATTCCTGACATGAGCACTTCCTTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCTCACACTAGTAATGTTCATTCCTGACATGAGCACTTCCTTGT  440

seq1  TAAAATCCTGGGCCAGGCACTGTACGATTATTGGGCACACAGGGATGATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCTGGGCCAGGCACTGTACGATTATTGGGCACACAGGGATGATC  490

seq1  TGGGTGGACAGCTGAGTTCCCACTGAGCAGTATTCTCTGAGGGCACTAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGACAGCTGAGTTCCCACTGAGCAGTATTCTCTGAGGGCACTAGA  540

seq1  TAGCACAGCTCTGGGCCAGGAAGACATGTGGTTGGAGCAGTCCCTTGACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAGCTCTGGGCCAGGAAGACATGTGGTTGGAGCAGTCCCTTGACA  590

seq1  GTCTTTTCTGACCCCATTTATCAGTGCCCCCTCATTTATTCACACTTGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCTGACCCCATTTATCAGTGCCCCCTCATTTATTCACACTTGAG  640

seq1  CTTTGTTTTATAGTGTTTCCTATGTGCTTACAGTACCCATGCCCAGTACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTATAGTGTTTCCTATGTGCTTACAGTACCCATGCCCAGTACT  690

seq1  TTGCATATCTGTTTGGTCTCTGAGAGGAGGACCATTGGGTCCCTTAGGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATCTGTTTGGTCTCTGAGAGGAGGACCATTGGGTCCCTTAGGTT  740

seq1  TCAGGCTCTGCTTTCTTGCACTCCTCATGCACTCTCGCTGACCTGTCATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTCTGCTTTCTTGCACTCCTCATGCACTCTCGCTGACCTGTCATA  790

seq1  GGATGCTGTTCTAGTAACAACACAACTGTGTGCTCTCCACTAGATCACCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGTTCTAGTAACAACACAACTGTGTGCTCTCCACTAGATCACCT  840

seq1  TTGAATATGGATGCAGCAACCTTATCCAGATGTCATGCCTGGGCCTTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATGGATGCAGCAACCTTATCCAGATGTCATGCCTGGGCCTTATA  890

seq1  TAGTCTCCAGCCTAAATGAGCCAGAAACATTTGAGCCTTGGCTACAAGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCCAGCCTAAATGAGCCAGAAACATTTGAGCCTTGGCTACAAGAC  940

seq1  ACAACCAGATCAAAAAAACTCTAGGAGAGAGTTGGGTGTAGTGGCGCACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAGATCAAAAAAACTCTAGGAGAGAGTTGGGTGTAGTGGCGCACA  990

seq1  CCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGAGGATTTCTGAGTTCG  1040

seq1  AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAG  1090

seq1  AGAAACCCTGTCTCGAAAAACCAAAAAAATTAGGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCTGTCTCGAAAAACCAAAAAAATTAGGAATTC  1129