BAC Information

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BAC

Clone NameB6Ng01-011E04
Chromosome11 (Build37)1 (Build37)
Map Location 103,704,369 - 103,704,450163,546,173 - 163,547,293
singlet/doubletsingletsinglet
Overlap geneNsf
Upstream geneEftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3
Downstream geneEG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011E04.bB6Ng01-011E04.g
ACCDH846691DH846692
length7281,130
definitionDH846691|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E04, 5' end.DH846692|Mus musculus domesticus DNA, BAC clone: B6Ng01-011E04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(103,704,369 - 103,704,450)(163,546,173 - 163,547,293)
sequence
gaattcaagaaactaaccaccaaaaaacccaatcaaaatatgggatatag
aactaaaccaagatttcacagctggggaatctcaaatggctaagaagcac
ctaaaattttttttcaaagtccttggtgatcagagaaatggaaatcaaaa
tgaccctgagattccatcttacaccaatcagaatggctaagatcaaaaaa
tcaggtgacaacacacattggagaggatgtggagaaaaaggaacactcct
gtattgctggtggtattgccaactagtacaaccactctggaaataaatct
ggaggttcctcagaaaattggaaatagatctacctgaagatacagctata
ccactcttgggagtatacccaaaagatgccccaccatgccatatgggcac
gtgttccactgtgttcatagtgacctcatttgtgatagccaaaagctgga
aacaacccagatgttccacaacagaaaaatagatacagaaaatgtgtttc
atttacacaatcgagtactactcagctattgagaacaaggacatcttgag
tttccagacaaatggaaggaactagaaaatatcttcctgagtgaggcaac
tcagattcaaaaggacatgtactcactaataagtggttagtagccaaaga
agaagaagaagaaggagaagaagaagaagaagaagaagaagaagaagaag
aagaagaagaagaagaagaagaagaaga
gaattcccatgaattttatattactaacaacagtataaagtgcttattat
ctctatacttctgatcatgaaactggatcagagatcaaatgttttgccta
ttcattcattagtaaatggtagaactaggcttcatctccaggaaatttag
gggcaaaagctggcacttaaaccccacttaacattacctaacagactatc
gccattgttcttaacaccactgggttttccagtggattcttaggagcagc
agcacacaacagcagagtgtttgttggagggaacattggtgatgccttca
gatgcaagtccgagaaggatgctggagcagtggctgtggacaatggaaaa
gcacagtgttgggtagaacattccagtctcaggacgagaggacttagaaa
tgagggtggcaagtggattggaccttctcactatggctctctgccgggtt
ccttccaggagctggtgagtagagctgagagtgaacctgtatgtgccggt
gatgctgagtgtcctgtgcgcataggcatgtgtgaaagatccagagtcta
tcgcatcagtctagatgttactgtgaacgtatgcactgactgcatcccag
acagacactatcaatgtctaagatagagaaggctgataaagtgtgccgcg
ttccgactcaggaatgttttggtttcgaacagttttccgtttcacttgcc
agaggcaatgtaaagtcatgcaaataaaaaggtcttagataaattagatc
acctcgtggtttgggaagaaaattgataaacacaaactctgctgaatgcc
ttgagggtcagagagtcagtgcctgtcagaacaagagaaggaaattctcc
agggttttgacaaagttacatgtgaccgtttggagctacagttccaggtt
tgtgcattctgcatggtggtgctggggcatgcatttttgttttagatggg
agggaacgtagaagtaggaccaattagcacctaaacatggaagttgttga
gttcaaattcttggagaggaaacaagtctagggaggctgcatgtgaagtt
tgttcatgtttgtctcagagaacttctttcaagagcccgaatacggtgat
aatgagtgcctgactagaaactggaaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_103704369_103704450
seq2: B6Ng01-011E04.b_690_771

seq1  AAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  50

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  82
      ||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  82

seq1: chr1_163546173_163547293
seq2: B6Ng01-011E04.g_66_1195 (reverse)

seq1  TTGTTTCCAGTTCTTTATCAGCAACT-GTTCTCACAGTATTCTGGCTCTT  49
      ||||||||||||  |  ||||  |||  || |||| |||||| |||||||
seq2  TTGTTTCCAGTTTCTAGTCAGGCACTCATTATCACCGTATTCGGGCTCTT  50

seq1  AGAAAGAAGTACCCAGAGACAAACATGAACAACCTCAACA-GCAGCCTCC  98
       ||||||||| | | ||||||||||||||||| ||  ||| |||||||||
seq2  -GAAAGAAGTTCTCTGAGACAAACATGAACAAACTTCACATGCAGCCTCC  99

seq1  ACAG-CTTGTTT-CTCTCCA--GATTTGAACTC-ACAACTCCATTGTCTA  143
        || ||||||| |||||||   |||||||||| |||||| |  ||| ||
seq2  CTAGACTTGTTTCCTCTCCAAGAATTTGAACTCAACAACTTCCATGTTTA  149

seq1  GGTGCTAATT-GTCCTACTTCTACGTTCCCCTCCCATCTAAA--CAACAT  190
      |||||||||| |||||||||||||||| ||||||||||||||   || ||
seq2  GGTGCTAATTGGTCCTACTTCTACGTT-CCCTCCCATCTAAAACAAAAAT  198

seq1  GCATGCCCCAGCACCACCATGCAGAATGCACAAACCTGGAACTGTAGCTC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCCCAGCACCACCATGCAGAATGCACAAACCTGGAACTGTAGCTC  248

seq1  CAAACGGTCACATGTAACTTTGTCAAAACCTTGG-GAATTTCCTTCTCTT  289
      |||||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  CAAACGGTCACATGTAACTTTGTCAAAACCCTGGAGAATTTCCTTCTCTT  298

seq1  GTTCTGACAGGCACTGACTCTCTGACCTTCAAGGCATTCAGCAGGGTTTG  339
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  GTTCTGACAGGCACTGACTCTCTGACCCTCAAGGCATTCAGCAGAGTTTG  348

seq1  TGTTTATCAATTTTCTTCCCAAACCACGAGGTGATCTAATTTATCTAAGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCAATTTTCTTCCCAAACCACGAGGTGATCTAATTTATCTAAGA  398

seq1  CCTTTTTATTTGCATGACTTTACATTGCCTCTGGCAAGTGAAACGGAAAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTATTTGCATGACTTTACATTGCCTCTGGCAAGTGAAACGGAAAA  448

seq1  CTGTTCGAAACCAAAACATTCCTGAGTCGGAACGCGGCACACTTTATCAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCGAAACCAAAACATTCCTGAGTCGGAACGCGGCACACTTTATCAG  498

seq1  CCTTCTCTATCTTAGACATTGATAGTGTCTGTCTGGGATGCAGTCAGTGC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTATCTTAGACATTGATAGTGTCTGTCTGGGATGCAGTCAGTGC  548

seq1  ATACGTTCACAGTAACATCTAGACTGATGCGATAGACTCTGGATCTTTCA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTTCACAGTAACATCTAGACTGATGCGATAGACTCTGGATCTTTCA  598

seq1  CACATGCCTATGCGCACAGGACACTCAGCATCACCGGCACATACAGGTTC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCCTATGCGCACAGGACACTCAGCATCACCGGCACATACAGGTTC  648

seq1  ACTCTCAGCTCTACTCACCAGCTCCTGGAAGGAACCCGGCAGAGAGCCAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGCTCTACTCACCAGCTCCTGGAAGGAACCCGGCAGAGAGCCAT  698

seq1  AGTGAGAAGGTCCAATCCACTTGCCACCCTCATTTCTAAGTCCTCTCGTC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAAGGTCCAATCCACTTGCCACCCTCATTTCTAAGTCCTCTCGTC  748

seq1  CTGAGACTGGAATGTTCTACCCAACACTGTGCTTTTCCATTGTCCACAGC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTGGAATGTTCTACCCAACACTGTGCTTTTCCATTGTCCACAGC  798

seq1  CACTGCTCCAGCATCCTTCTCGGACTTGCATCTGAAGGCATCACCAATGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTCCAGCATCCTTCTCGGACTTGCATCTGAAGGCATCACCAATGT  848

seq1  TCCCTCCAACAAACACTCTGCTGTTGTGTGCTGCTGCTCCTAAGAATCCA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCAACAAACACTCTGCTGTTGTGTGCTGCTGCTCCTAAGAATCCA  898

seq1  CTGGAAAACCCAGTGGTGTTAAGAACAATGGCGATAGTCTGTTAGGTAAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAACCCAGTGGTGTTAAGAACAATGGCGATAGTCTGTTAGGTAAT  948

seq1  GTTAAGTGGGGTTTAAGTGCCAGCTTTTGCCCCTAAATTTCCTGGAGATG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTGGGGTTTAAGTGCCAGCTTTTGCCCCTAAATTTCCTGGAGATG  998

seq1  AAGCCTAGTTCTACCATTTACTAATGAATGAATAGGCAAAACATTTGATC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAGTTCTACCATTTACTAATGAATGAATAGGCAAAACATTTGATC  1048

seq1  TCTGATCCAGTTTCATGATCAGAAGTATAGAGATAATAAGCACTTTATAC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCCAGTTTCATGATCAGAAGTATAGAGATAATAAGCACTTTATAC  1098

seq1  TGTTGTTAGTAATATAAAATTCATGGGAATTC  1121
      ||||||||||||||||||||||||||||||||
seq2  TGTTGTTAGTAATATAAAATTCATGGGAATTC  1130