BAC Information

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BAC

Clone NameB6Ng01-011F13
Chromosome11 (Build37)
Map Location 51,037,125 - 51,171,000
singlet/doubletdoublet
Overlap geneLOC622699, BC049762, Clk4, Col23a1
Upstream geneMgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik
Downstream geneAgxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011F13.bB6Ng01-011F13.g
ACCDH846757DH846758
length5521,026
definitionDH846757|Mus musculus domesticus DNA, BAC clone: B6Ng01-011F13, 5' end.DH846758|Mus musculus domesticus DNA, BAC clone: B6Ng01-011F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,170,443 - 51,171,000)(51,037,125 - 51,038,152)
sequence
ttaatgattccacccaaaccatgttctaaatgcagtgctcatcactgctt
ttcaaaaagcctcaacaaatctacactttctatttcttttaaaaagaaaa
tgtgggtgtgtgcatgttcatatgtgggggtaaccctcaggtacaacaag
tacatgtgtgtgcatgtatgtgagggccagaggtcaaccttgggtgtcat
tggtaggagctggacgtctgatttttttagataaggtctcttactgagac
ctgaggcttaccagttaggataagctgatggctagtgagccccagaatcc
acccgtctctgcttctagcactaagttagatcaccagcccccataaaaaa
aatccctgcagagatctaacttgggtcatcatacttgaatggcaagctct
ttttgtttgtgtgcatgggggggggtgttaagacagggtttctctgtgta
gccctggctgtgctggaactctctctgtagaccatgctggccttgaactc
atagggcctcctgcctctgcctcctgagtgccgaaattaaaggcatgcgc
ca
gaattctctacttcctggtctccgttgtcctctgtctaggatgtcagcca
aatgtccagtttctctgtggctttctaaacaacaaagcaaactgtattga
ctacactcatgtgataggattctcttcagtaattaaattagacatttggt
acaaacacagtgtatgtcagcacgtgagaggcaggcttagggcagtaact
agtttgaaccagctttagtcagagaatgagaccagtctcagaaaatgaca
acagtaaaatgccaaagtattaataactgatggtgcggactcacttcact
gagaaagttgtgtttggaagacaattacttaagggttagcctaagctaca
tcctgagttctaggccagacctgggctaagtaatgaaaccatgtctaaaa
cttaacaaacaagctgagggttgtgttcccagctatgagacagacaaagg
ggtgtcagcagaagttcaaggccagcattgagtcactgtgaaccctagaa
cattctgacctctgagagattacagttcattaaaagtagagaagtgctgt
gtggtacaagaattaaggagaggcggaagtaaggaatggaagggaactcg
atgaaaagctgagcagggcggtgaatgcccgtcctcccagcacttcttct
gtgagacggagcacaggaagttcgaggtcatccttggaatcacagtaacc
ctgaggtcagcctgggctgctttcacaccctgactcgaaagacatgaata
aataaaaaccagatatgtgctcagtgccagctgacacaaacccttatttc
tagccttagaaggagctcaaccaaggctagtctgggctgcagactgagat
tgagtcaaaggagacaccagcaaagaatgtacttagagaatcccttgtta
ctcagaaagtaagggggagcacacccagaccatatgtgaggccattgagc
acatggatgattacaaagccagagttacatgtacctggaaactcttggtg
tcttactcttggagttccagcgatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_51170443_51171000
seq2: B6Ng01-011F13.b_43_600 (reverse)

seq1  TGGCGCATGCCTTTAATTTCGGCACTCAGGAGGCAGAGGCAGGAGGACCT  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGGCGCATGCCTTTAATTTCGGCACTCAGGAGGCAGAGGCAGGAGGCCCT  50

seq1  CTGAGTTCAAGGCCAGCCTGGTCTACAGAGAGAGTTCCAGCACAGCCAGG  100
       |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGAGTTCAAGGCCAGCATGGTCTACAGAGAGAGTTCCAGCACAGCCAGG  100

seq1  GCTACACAGAGAAACCCTGTCTTAACACCCCCCCCCATGCACACAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGAGAAACCCTGTCTTAACACCCCCCCCCATGCACACAAACAA  150

seq1  AAAGAGCTTGCCATTCAAGTATGATGACCCAAGTTAGATCTCTGCAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTTGCCATTCAAGTATGATGACCCAAGTTAGATCTCTGCAGGGA  200

seq1  TTTTTTTTATGGGGGCTGGTGATCTAACTTAGTGCTAGAAGCAGAGACGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTATGGGGGCTGGTGATCTAACTTAGTGCTAGAAGCAGAGACGG  250

seq1  GTGGATTCTGGGGCTCACTAGCCATCAGCTTATCCTAACTGGTAAGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTCTGGGGCTCACTAGCCATCAGCTTATCCTAACTGGTAAGCCTC  300

seq1  AGGTCTCAGTAAGAGACCTTATCTAAAAAAATCAGACGTCCAGCTCCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCAGTAAGAGACCTTATCTAAAAAAATCAGACGTCCAGCTCCTAC  350

seq1  CAATGACACCCAAGGTTGACCTCTGGCCCTCACATACATGCACACACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACACCCAAGGTTGACCTCTGGCCCTCACATACATGCACACACATG  400

seq1  TACTTGTTGTACCTGAGGGTTACCCCCACATATGAACATGCACACACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTTGTACCTGAGGGTTACCCCCACATATGAACATGCACACACCCA  450

seq1  CATTTTCTTTTTAAAAGAAATAGAAAGTGTAGATTTGTTGAGGCTTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTTTTAAAAGAAATAGAAAGTGTAGATTTGTTGAGGCTTTTTG  500

seq1  AAAAGCAGTGATGAGCACTGCATTTAGAACATGGTTTGGGTGGAATCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGTGATGAGCACTGCATTTAGAACATGGTTTGGGTGGAATCATT  550

seq1  AAGAATTC  558
      ||||||||
seq2  AAGAATTC  558

seq1: chr11_51037125_51038152
seq2: B6Ng01-011F13.g_66_1091

seq1  GAATTCTCTACTTCCTGGTCTCCGTTGTCCTCTGTCTAGGATGTCAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACTTCCTGGTCTCCGTTGTCCTCTGTCTAGGATGTCAGCCA  50

seq1  AATGTCCAGTTTCTCTGTGGCTTTCTAAACAACAAAGCAAACTGTATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCAGTTTCTCTGTGGCTTTCTAAACAACAAAGCAAACTGTATTGA  100

seq1  CTACACTCATGTGATAGGATTCTCTTCAGTAATTAAATTAGACATTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTCATGTGATAGGATTCTCTTCAGTAATTAAATTAGACATTTGGT  150

seq1  ACAAACACAGTGTATGTCAGCACGTGAGAGGCAGGCTTAGGGCAGTAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACAGTGTATGTCAGCACGTGAGAGGCAGGCTTAGGGCAGTAACT  200

seq1  AGTTTGAACCAGCTTTAGTCAGAGAATGAGACCAGTCTCAGAAAATGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAACCAGCTTTAGTCAGAGAATGAGACCAGTCTCAGAAAATGACA  250

seq1  ACAGTAAAATGCCAAAGTATTAATAACTGATGGTGCGGACTCACTTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAAATGCCAAAGTATTAATAACTGATGGTGCGGACTCACTTCACT  300

seq1  GAGAAAGTTGTGTTTGGAAGACAATTACTTAAGGGTTAGCCTAAGCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTTGTGTTTGGAAGACAATTACTTAAGGGTTAGCCTAAGCTACA  350

seq1  TCCTGAGTTCTAGGCCAGACCTGGGCTAAGTAATGAAACCATGTCTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTCTAGGCCAGACCTGGGCTAAGTAATGAAACCATGTCTAAAA  400

seq1  CTTAACAAACAAGCTGAGGGTTGTGTTCCCAGCTATGAGACAGACAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAAACAAGCTGAGGGTTGTGTTCCCAGCTATGAGACAGACAAAGG  450

seq1  GGTGTCAGCAGAAGTTCAAGGCCAGCATTGAGTCACTGTGAACCCTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAGCAGAAGTTCAAGGCCAGCATTGAGTCACTGTGAACCCTAGAA  500

seq1  CATTCTGACCTCTGAGAGATTACAGTTCATTAAAAGTAGAGAAGTGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGACCTCTGAGAGATTACAGTTCATTAAAAGTAGAGAAGTGCTGT  550

seq1  GTGGTACAAGAATTAAGGAGAGGCGGAAGTAAGGAATGGAAGGGAACTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACAAGAATTAAGGAGAGGCGGAAGTAAGGAATGGAAGGGAACTCG  600

seq1  ATGAAAAGCTGAGCAGGGCGGTGAATGCCCGTCCTCCCAGCACTTCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGCTGAGCAGGGCGGTGAATGCCCGTCCTCCCAGCACTTCTTCT  650

seq1  GTGAGACGGAGCACAGGAAGTTCGAGGTCATCCTTGGAATCACAGTAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACGGAGCACAGGAAGTTCGAGGTCATCCTTGGAATCACAGTAACC  700

seq1  CTGAGGTCAGCCTGGGCTGC-TTCACACCCTGACTCGAAAGACATGAATA  749
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGAGGTCAGCCTGGGCTGCTTTCACACCCTGACTCGAAAGACATGAATA  750

seq1  AATAAAAACCAGATATGTGCTCAGTGCCAGCTGACACAAACCCTTATTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACCAGATATGTGCTCAGTGCCAGCTGACACAAACCCTTATTTC  800

seq1  TAGCCTTAGAAGGAGCTCAACCAAGGCTAGCCTGGGCTGCAGACTGAGAA  849
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  TAGCCTTAGAAGGAGCTCAACCAAGGCTAGTCTGGGCTGCAGACTGAG-A  849

seq1  TTGATGTCAAAAGGAGACACCAGCAAAAGAATGTACTTAGAGAATCCCTT  899
      |||| ||| ||||||||||||||| |||||||||||||||||||||||||
seq2  TTGA-GTC-AAAGGAGACACCAGC-AAAGAATGTACTTAGAGAATCCCTT  896

seq1  GTCACTCAGAAAGTAAGGGGGAGGCACACACAGACCATATGTGAGGCCAT  949
      || ||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  GTTACTCAGAAAGTAAGGGGGA-GCACACCCAGACCATATGTGAGGCCAT  945

seq1  TGGAGCACAT-GATGATTACAAAGCCAGAGTAACATGTACCT-GAGACCC  997
      | |||||||| |||||||||||||||||||| |||||||||| || || |
seq2  T-GAGCACATGGATGATTACAAAGCCAGAGTTACATGTACCTGGAAACTC  994

seq1  TT-GTGTCTCACCTCTGGAGTTCCAGCGATCA  1028
      || |||||| ||   |||||||||||||||||
seq2  TTGGTGTCTTACTCTTGGAGTTCCAGCGATCA  1026