BAC Information

Click to search

BAC

Clone NameB6Ng01-011J07
Chromosome11 (Build37)
Map Location 42,327,731 - 42,484,181
singlet/doubletdoublet
Overlap geneGabrb2
Upstream geneLOC100039292, Gabrg2, Gabra1, Gabra6
Downstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6, LOC620562
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011J07.bB6Ng01-011J07.g
ACCDH846923DH846924
length1,1741,152
definitionDH846923|Mus musculus domesticus DNA, BAC clone: B6Ng01-011J07, 5' end.DH846924|Mus musculus domesticus DNA, BAC clone: B6Ng01-011J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,483,002 - 42,484,181)(42,327,731 - 42,328,900)
sequence
gaattcctttacacaatgcccaacatccactaaactcttgataaatagtc
ttgatacttacgttgttactaagtggggccctcagaatatcatggggata
tgttttcattgtaaagtcctgaaactacttcaaatccgcatcagactcac
tgcatggatacatttcaagagcaactctgaaaacaagctgaactcatctc
actgctcaaactccattgttgatttttaaaatgtagtatatggattttgc
tctgggaatacatcttcatcctaaaaatgatttgcatctttatacatcat
tcactacaaaccactgtgtccggaattaaccatagagcccaaaataattt
gcttacaagtttaaaatattgcggattaatgattcaagcaatgctaagcc
taaaagacaagcacttccctttgttatttaattagtaaattatttctttt
tcatattaagtaattagtattttattttgtagcctatttcccacatacct
gctgacttttgtctgataacatggagaaacagataccaattcagttagtc
catattgatgctctttttcctagaggaattggagccacccctcccccagc
caatgacctctacagagggctcccagcttccagctttcagcttcacttcc
ctgtagtgctctctccacttccttataggtctcacctctattttttattt
ctccacatcttaaaactcttacctttcagtatttccaggaaactctagta
tggaaacactaaaccagtatacatattcaacataaaattattcaatttcc
agaaaggggaagttgtacaaactcgatggcaattcacaaggaatcggaca
tatatgagaagatgatggcgctgccccatccaaagaaagccaaacacaca
ccaggcaggcttcaggcactaggtacccaccctcatctgcctgtctatgg
gtacctatctcttcttctttctgctgtctctctgctttctcattctactc
ttctcttataacaacccatcttttattttcccagctcatgaaaagaaaaa
catagccagaatttctgaaatattcaattcagactcccaagggaggggtt
gggaattaaactccttaattcagcatatctttcttgtgtggaaggaatat
gtaacacagattatacaccagcac
gaattctccatcttcatctgaaggctgctagtggaagattgactaccagg
cagctaggataataatagtaataattagaaggaagattgatgctaggtcc
cctttgcaaaatgatagtaatatagtttatgattttcacagcagagattc
ttcaggcatgagtatctttcctccttttaggtaggtcttacagcctgttg
aaaagctgtggttatccccataaaagtgtgcttcagttttaaagtttctg
ttgcttatttatttccaggaagtaaaatataaataccaggagcattgagc
tttgcatgctatgtagaaagtttctaaatgtggtggtctttattaccata
tatcaccctattttcttctctcagtatctcctactgcctggtatttctct
cagggacgataagcattaggtaattattagtctatctatctttcttttga
gtagaggcaaactgaactcctttaggcggaagctggagaaaggcaaggag
gctatagagaaaacaaacctaaaaccagttgtgccacagtgatacaatgc
atcataaccatgtacagataattaattcagatacaatgactcattagcag
tatcatagtgttctatcacaaatgtcttaactaatcagagactctagcag
agacatgaaatattgaatctagttctttgagaatgcccctaaattattgt
gcatcacaaatgtgtttccttagctctgtggtcattaagcaggtgttgaa
atcgatatttggaagctatattaaagctttagatatgcagctatgttgac
aaacctcagtagaccctgcccattttcttcagataaaattcagctaaaat
cgaattagccaacatatgctgccacttcaaataatttacacatttccttc
agtctcagttgctataaattaacaggtagagagtctgtctacatgaacta
gaaaatatagatcatccttgcaccaggagttgctcccatcccaacatctg
acagatgagcctattctgtacacatcatctcaggaaagagcctgctaatc
caccttggagagcatctcatcatttacagctctactgtcggcgatcatct
tttctcttactaaatctcctgtcccttcatgtaattgatggaaccttctg
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_42483002_42484181
seq2: B6Ng01-011J07.b_46_1219 (reverse)

seq1  GTGCTGGTGTTATATTTGTGTTACATAATCCCCTCACAC-AGAAAGATAT  49
      ||||||||||   || ||||||||||| |||   ||||| ||||||||||
seq2  GTGCTGGTGTATAATCTGTGTTACATATTCCTTCCACACAAGAAAGATAT  50

seq1  ACCTTGATTTAAGGAGGTTAATT-CCAACTCCTCCCTTGGGGGTCTTGAA  98
       |  ||| |||||||| |||||| ||||| ||||||||||| ||| ||||
seq2  GC--TGAATTAAGGAGTTTAATTCCCAACCCCTCCCTTGGGAGTC-TGAA  97

seq1  TTG-ATATTTCAG-AATTCTGGCTATGTTTTTCTTTTCATGAGCTGGGGA  146
      ||| ||||||||| |||||||||||||||||||||||||||||||||| |
seq2  TTGAATATTTCAGAAATTCTGGCTATGTTTTTCTTTTCATGAGCTGGGAA  147

seq1  GATAAAAGATGGGTTGTTATAAGAGAAGGAGTAGGAATGAGAAAGCAGAG  196
       |||||||||||||||||||||||||| ||||| ||||||||||||||| 
seq2  AATAAAAGATGGGTTGTTATAAGAGAA-GAGTA-GAATGAGAAAGCAGA-  194

seq1  GAGACAAGCAGAAAGGAAGGAAGAGATAGGTACCCATAGACAGGCAGATG  246
      ||||| |||||||||  | |||||||||||||||||||||||||||||||
seq2  GAGAC-AGCAGAAAG--AAGAAGAGATAGGTACCCATAGACAGGCAGATG  241

seq1  AGGGTGGGTACCTAGTGCCCTGAAGCCTGCCTGGTGTGTGTTTGGCTTTC  296
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGGTGGGTACCTAGTG-CCTGAAGCCTGCCTGGTGTGTGTTTGGCTTTC  290

seq1  TTTGGATGGGGCAGCGCCATCATCTTCTCATATATGTCCGATTCCTTGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATGGGGCAGCGCCATCATCTTCTCATATATGTCCGATTCCTTGTG  340

seq1  AATTGCCATCGAGTTTGTACAACTTCCCCTTTCTGGAAATTGAATAATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCATCGAGTTTGTACAACTTCCCCTTTCTGGAAATTGAATAATTT  390

seq1  TATGTTGAATATGTATACTGGTTTAGTGTTTCCATACTAGAGTTTCCTGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGAATATGTATACTGGTTTAGTGTTTCCATACTAGAGTTTCCTGG  440

seq1  AAATACTGAAAGGTAAGAGTTTTAAGATGTGGAGAAATAAAAAATAGAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGAAAGGTAAGAGTTTTAAGATGTGGAGAAATAAAAAATAGAGG  490

seq1  TGAGACCTATAAGGAAGTGGAGAGAGCACTACAGGGAAGTGAAGCTGAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCTATAAGGAAGTGGAGAGAGCACTACAGGGAAGTGAAGCTGAAA  540

seq1  GCTGGAAGCTGGGAGCCCTCTGTAGAGGTCATTGGCTGGGGGAGGGGTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGCTGGGAGCCCTCTGTAGAGGTCATTGGCTGGGGGAGGGGTGG  590

seq1  CTCCAATTCCTCTAGGAAAAAGAGCATCAATATGGACTAACTGAATTGGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATTCCTCTAGGAAAAAGAGCATCAATATGGACTAACTGAATTGGT  640

seq1  ATCTGTTTCTCCATGTTATCAGACAAAAGTCAGCAGGTATGTGGGAAATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTCTCCATGTTATCAGACAAAAGTCAGCAGGTATGTGGGAAATA  690

seq1  GGCTACAAAATAAAATACTAATTACTTAATATGAAAAAGAAATAATTTAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAAAATAAAATACTAATTACTTAATATGAAAAAGAAATAATTTAC  740

seq1  TAATTAAATAACAAAGGGAAGTGCTTGTCTTTTAGGCTTAGCATTGCTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAATAACAAAGGGAAGTGCTTGTCTTTTAGGCTTAGCATTGCTTG  790

seq1  AATCATTAATCCGCAATATTTTAAACTTGTAAGCAAATTATTTTGGGCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTAATCCGCAATATTTTAAACTTGTAAGCAAATTATTTTGGGCTC  840

seq1  TATGGTTAATTCCGGACACAGTGGTTTGTAGTGAATGATGTATAAAGATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTAATTCCGGACACAGTGGTTTGTAGTGAATGATGTATAAAGATG  890

seq1  CAAATCATTTTTAGGATGAAGATGTATTCCCAGAGCAAAATCCATATACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCATTTTTAGGATGAAGATGTATTCCCAGAGCAAAATCCATATACT  940

seq1  ACATTTTAAAAATCAACAATGGAGTTTGAGCAGTGAGATGAGTTCAGCTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAAAAATCAACAATGGAGTTTGAGCAGTGAGATGAGTTCAGCTT  990

seq1  GTTTTCAGAGTTGCTCTTGAAATGTATCCATGCAGTGAGTCTGATGCGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGAGTTGCTCTTGAAATGTATCCATGCAGTGAGTCTGATGCGGA  1040

seq1  TTTGAAGTAGTTTCAGGACTTTACAATGAAAACATATCCCCATGATATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTAGTTTCAGGACTTTACAATGAAAACATATCCCCATGATATTC  1090

seq1  TGAGGGCCCCACTTAGTAACAACGTAAGTATCAAGACTATTTATCAAGAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCCCCACTTAGTAACAACGTAAGTATCAAGACTATTTATCAAGAG  1140

seq1  TTTAGTGGATGTTGGGCATTGTGTAAAGGAATTC  1180
      ||||||||||||||||||||||||||||||||||
seq2  TTTAGTGGATGTTGGGCATTGTGTAAAGGAATTC  1174

seq1: chr11_42327731_42328900
seq2: B6Ng01-011J07.g_67_1218

seq1  GAATTCTCCATCTTCATCTGAAGGCTGCTAGTGGAAGATTGACTACCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATCTTCATCTGAAGGCTGCTAGTGGAAGATTGACTACCAGG  50

seq1  CAGCTAGGATAATAATAGTAATAATTAGAAGGAAGATTGATGCTAGGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGGATAATAATAGTAATAATTAGAAGGAAGATTGATGCTAGGTCC  100

seq1  CCTTTGCAAAATGATAGTAATATAGTTTATGATTTTCACAGCAGAGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCAAAATGATAGTAATATAGTTTATGATTTTCACAGCAGAGATTC  150

seq1  TTCAGGCATGAGTATCTTTCCTCCTTTTAGGTAGGTCTTACAGCCTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCATGAGTATCTTTCCTCCTTTTAGGTAGGTCTTACAGCCTGTTG  200

seq1  AAAAGCTGTGGTTATCCCCATAAAAGTGTGCTTCAGTTTTAAAGTTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGTGGTTATCCCCATAAAAGTGTGCTTCAGTTTTAAAGTTTCTG  250

seq1  TTGCTTATTTATTTCCAGGAAGTAAAATATAAATACCAGGAGCATTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTATTTATTTCCAGGAAGTAAAATATAAATACCAGGAGCATTGAGC  300

seq1  TTTGCATGCTATGTAGAAAGTTTCTAAATGTGGTGGTCTTTATTACCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGCTATGTAGAAAGTTTCTAAATGTGGTGGTCTTTATTACCATA  350

seq1  TATCACCCTATTTTCTTCTCTCAGTATCTCCTACTGCCTGGTATTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCCTATTTTCTTCTCTCAGTATCTCCTACTGCCTGGTATTTCTCT  400

seq1  CAGGGACGATAAGCATTAGGTAATTATTAGTCTATCTATCTTTCTTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACGATAAGCATTAGGTAATTATTAGTCTATCTATCTTTCTTTTGA  450

seq1  GTAGAGGCAAACTGAACTCCTTTAGGCGGAAGCTGGAGAAAGGCAAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGCAAACTGAACTCCTTTAGGCGGAAGCTGGAGAAAGGCAAGGAG  500

seq1  GCTATAGAGAAAACAAACCTAAAACCAGTTGTGCCACAGTGATACAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGAGAAAACAAACCTAAAACCAGTTGTGCCACAGTGATACAATGC  550

seq1  ATCATAACCATGTACAGATAATTAATTCAGATACAATGACTCATTAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAACCATGTACAGATAATTAATTCAGATACAATGACTCATTAGCAG  600

seq1  TATCATAGTGTTCTATCACAAATGTCTTAACTAATCAGAGACTCTAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAGTGTTCTATCACAAATGTCTTAACTAATCAGAGACTCTAGCAG  650

seq1  AGACATGAAATATTGAATCTAGTTCTTTGAGAATGCCCCTAAATTATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGAAATATTGAATCTAGTTCTTTGAGAATGCCCCTAAATTATTGT  700

seq1  GCATCACAAATGTGTTTCCTTAGCTCTGTGGTCATTAAGCAGGTGTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACAAATGTGTTTCCTTAGCTCTGTGGTCATTAAGCAGGTGTTGAA  750

seq1  ATCGATATTTGGAAGCTATATTAAAGCTTTAGATATGCAGCTATGTTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATATTTGGAAGCTATATTAAAGCTTTAGATATGCAGCTATGTTGAC  800

seq1  AAACCTCAGTAGACCCTGCCCATTTTCTTCAGATAAAATTCAGCTAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCAGTAGACCCTGCCCATTTTCTTCAGATAAAATTCAGCTAAAAT  850

seq1  CGAATTAGCCAACATATGCTGCCACTTCAAATAATTTACACATTTCCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTAGCCAACATATGCTGCCACTTCAAATAATTTACACATTTCCTTC  900

seq1  AGTCTTCAGTTGCTATAAATTAACAGGTAGAGAGTCTGTCTACATGAACC  950
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTC-TCAGTTGCTATAAATTAACAGGTAGAGAGTCTGTCTACATGAACT  949

seq1  AGAAAATATAGATCATCCTTGCA-CAGGAGTTGCTCCCCATCCCAACATC  999
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  AGAAAATATAGATCATCCTTGCACCAGGAGTTGCT-CCCATCCCAACATC  998

seq1  TTGACAGATGAGCCTATTCTGTACACATCATCTCCAGGAAAAGAAGCCTG  1049
       |||||||||||||||||||||||||||||||| |||||||   ||||||
seq2  -TGACAGATGAGCCTATTCTGTACACATCATCT-CAGGAAA--GAGCCTG  1044

seq1  CTTATCCACCCTGGAGAGCCATCTCATCATTTACAGCTCTACTGTCGGCA  1099
      || ||||||| ||||||| |||||||||||||||||||||||||||||| 
seq2  CTAATCCACCTTGGAGAG-CATCTCATCATTTACAGCTCTACTGTCGGC-  1092

seq1  GAGTCATC-TTTCTCTTTAACCTAAATCCTCTGTGCCCTTCATGGTAAAA  1148
      || ||||| ||||||||    |||||||  |||| |||||||||    ||
seq2  GA-TCATCTTTTCTCTT---ACTAAATCTCCTGT-CCCTTCATG---TAA  1134

seq1  TTGATGGGTAAACCTTTCTGTT  1170
      |||||||   |||| |||||||
seq2  TTGATGG---AACC-TTCTGTT  1152