BAC Information

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BAC

Clone NameB6Ng01-012A09
Chromosome11 (Build37)
Map Location 62,065,150 - 62,168,911
singlet/doubletdoublet
Overlap geneAdora2b, 2410012H22Rik, Ttc19, Ncor1
Upstream geneAldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1
Downstream genePigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012A09.bB6Ng01-012A09.g
ACCDH847230DH847231
length1,0971,169
definitionDH847230|Mus musculus domesticus DNA, BAC clone: B6Ng01-012A09, 5' end.DH847231|Mus musculus domesticus DNA, BAC clone: B6Ng01-012A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,167,861 - 62,168,911)(62,065,150 - 62,066,347)
sequence
gaattctggaatctgtctgcctttgtaagcataaaaacaaaactaatgag
ctgggtggggtctctcggagtgccactccctacatctcttctctccttcc
tctgtaactctcttgataagttggctggaagcgcagctgcctttgttcct
ttagctttgtgaaacccctcatataattaatattgcatccttaggttttg
aggagttaggtatttttgaacaagtttttaagagttcttttccatagcca
tcagagctatcctgaaggtctcagcacttaccttcttcaagcatgttgac
ttgctgagacattagccacacctccagtactctttgctgtctctgatttt
catggagtcaccaacattaactgggaggactttccttggaggaggaatgt
taagtatatatgttattatacaaacaagcctcgtgctccccaacccccca
ccctccccagccttcacctctggtggaggctcacacctcctggtcctgtc
ccaagtacaggaaccatgtcattctgtccctaacaaggccatgccagact
tggctaataaataatctatatgtaatatgtgatattgttagtatacatat
tttactcctttagtttttctaacttaataatctatgctgaaatttccctt
ttgttcaattactttttaaagttgtgagtggcagagatatagatttttat
agatggaacgtgaagattgactttactctcaggagagacaatgcttagtc
tttgactcttttatctttttattttttagggaactcctggcacttacttg
tcttctcataatcaggcttatccacaagaagcccctaagccctccgtggg
gtctatctctctgggattgccccggcagcaggagtctaccaaagcagtca
gtgagtggccacagttctatcacgcctgtttgtagcatcatggtcagcca
ctcagtggtggtctctcatggttctctttcttttcccaatagctcctttg
actacatcaagcagaagaatttctccgagaagccaaaactcacaacctga
ggtttattgtcagagcgcaacatgaggtgtggtcgagtaaactgtat
gaattctgtggctgtagttccagctactgaggaaggctgaagccaggggc
ttgattgctcaagcccaagagttcaaggttaatttgggcaagcaagaccc
ttctcttaaaaaaaaaatgcagattacagggcacatttgagttccctgga
tcagagcctggggtagagtatatataggcttccagcattaatatctaacc
tgggtctgttacatcaagctgagaaccctccaactgtcaggaaggttttg
aaattatacttctccctttttcttttttgatatggtctgagttaccccaa
actctgagttggttccgaggccttccttggggccatggagctacaggtgg
gcatcaggtcagaaaggccctactaaggattggggtgtagtggtcaagca
tgtgatcccagcagtcaggagcctaaggcaggaagataatcactagtttg
aggctagattgaggctacagagtgagttccagtcccaagatagcctgtgc
tgcagtggggaatcctatatcctacatacatacatacaaacatacataca
tacatacatacatacatacaggaatgaagatcaaatacttctctgccaga
ggaccagagttcagttcccatcaacccctggtcgacttttacaactattt
tgtactttcatctcctggggattcaaaaccttcttctggcctctttgggt
acctacgattggacacacacacacataacactttaaaaaaataatgaaaa
gaaaagatatcctgtttaggaggcagtgtctctcttgaaggaagccaaga
agtgagtaggcgaagcccagggtgtgacacccagggtgggcaggcagggt
gtcagcaccgagtgcttatttagctagacacagttcttactcgggcaaga
caaactcttaggcttgactctgtggtttcaatggtgtcatgctgaaggag
ctgctggcttccatggactagcctcagttttactaacacgaaggatgatg
cagtgtgaaagggggagttcagagcagtgctagtataaaagtgatgcttt
gtgctcattgaaaagacagctgcttcgctcggctctgcatttgtctatag
tgaggggatccaccagactgttctgcttctgtctgtggagacttcatgct
ggaactccagtgtcagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_62167861_62168911
seq2: B6Ng01-012A09.b_105_1143 (reverse)

seq1  ATACAGTTTTACCTCTGACCACACCTTCATGCTGCGCTCTGACCAATAAA  50
      |||||||||   ||| ||||||||| ||||| |||||||||| |||||||
seq2  ATACAGTTT--ACTC-GACCACACC-TCATGTTGCGCTCTGA-CAATAAA  45

seq1  CCCTCAGGTTGTGAGTTTTGGCTTCTCGGAGAAAATTCTTCCTGCTTGAT  100
       |||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  -CCTCAGGTTGTGAGTTTTGGCTTCTCGGAG-AAATTCTT-CTGCTTGAT  92

seq1  GTAGGTCAAAGGAGCTATGGGGAAAAGAAAGAGAACCATGAGAAGACCAA  150
      ||| |||||||||||||| ||||||||||||||||||||||| ||||| |
seq2  GTA-GTCAAAGGAGCTATTGGGAAAAGAAAGAGAACCATGAG-AGACC-A  139

seq1  CCACTGAGTGGCTGACCATGATGCTACAAACAGGCGTGATAGAACTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGTGGCTGACCATGATGCTACAAACAGGCGTGATAGAACTGTGG  189

seq1  CCACTCACTGACCTGCTTTGGTAGACTCCTGCTGCCGGGGCAATCCCAGA  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCACTCACTGA-CTGCTTTGGTAGACTCCTGCTGCCGGGGCAATCCCAGA  238

seq1  GAGATAGACCCCACGGAGGGCTTAGGGGCTTCTTGTGGATAAGCCTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGACCCCACGGAGGGCTTAGGGGCTTCTTGTGGATAAGCCTGATT  288

seq1  ATGAGAAGACAAGTAAGTGCCAGGAGTTCCCTAAAAAATAAAAAGATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGACAAGTAAGTGCCAGGAGTTCCCTAAAAAATAAAAAGATAAA  338

seq1  AGAGTCAAAGACTAAGCATTGTCTCTCCTGAGAGTAAAGTCAATCTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAAAGACTAAGCATTGTCTCTCCTGAGAGTAAAGTCAATCTTCAC  388

seq1  GTTCCATCTATAAAAATCTATATCTCTGCCACTCACAACTTTAAAAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATCTATAAAAATCTATATCTCTGCCACTCACAACTTTAAAAAGTA  438

seq1  ATTGAACAAAAGGGAAATTTCAGCATAGATTATTAAGTTAGAAAAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACAAAAGGGAAATTTCAGCATAGATTATTAAGTTAGAAAAACTAA  488

seq1  AGGAGTAAAATATGTATACTAACAATATCACATATTACATATAGATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAAAATATGTATACTAACAATATCACATATTACATATAGATTATT  538

seq1  TATTAGCCAAGTCTGGCATGGCCTTGTTAGGGACAGAATGACATGGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCCAAGTCTGGCATGGCCTTGTTAGGGACAGAATGACATGGTTCC  588

seq1  TGTACTTGGGACAGGACCAGGAGGTGTGAGCCTCCACCAGAGGTGAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTGGGACAGGACCAGGAGGTGTGAGCCTCCACCAGAGGTGAAGGC  638

seq1  TGGGGAGGGTGGGGGGTTGGGGAGCACGAGGCTTGTTTGTATAATAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGGTGGGGGGTTGGGGAGCACGAGGCTTGTTTGTATAATAACAT  688

seq1  ATATACTTAACATTCCTCCTCCAAGGAAAGTCCTCCCAGTTAATGTTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTAACATTCCTCCTCCAAGGAAAGTCCTCCCAGTTAATGTTGGT  738

seq1  GACTCCATGAAAATCAGAGACAGCAAAGAGTACTGGAGGTGTGGCTAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCATGAAAATCAGAGACAGCAAAGAGTACTGGAGGTGTGGCTAATG  788

seq1  TCTCAGCAAGTCAACATGCTTGAAGAAGGTAAGTGCTGAGACCTTCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCAAGTCAACATGCTTGAAGAAGGTAAGTGCTGAGACCTTCAGGA  838

seq1  TAGCTCTGATGGCTATGGAAAAGAACTCTTAAAAACTTGTTCAAAAATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTGATGGCTATGGAAAAGAACTCTTAAAAACTTGTTCAAAAATAC  888

seq1  CTAACTCCTCAAAACCTAAGGATGCAATATTAATTATATGAGGGGTTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCCTCAAAACCTAAGGATGCAATATTAATTATATGAGGGGTTTCA  938

seq1  CAAAGCTAAAGGAACAAAGGCAGCTGCGCTTCCAGCCAACTTATCAAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTAAAGGAACAAAGGCAGCTGCGCTTCCAGCCAACTTATCAAGAG  988

seq1  AGTTACAGAGGAAGGAGAGAAGAGATGTAGGGAGTGGCACTCCGAGAGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAGAGGAAGGAGAGAAGAGATGTAGGGAGTGGCACTCCGAGAGAC  1038

seq1  C  1051
      |
seq2  C  1039

seq1: chr11_62065150_62066347
seq2: B6Ng01-012A09.g_69_1237

seq1  GAATTCTGTGGCTGTAGTTCCAGCTACTGAGGAAGGCTGAAGCCAGGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGCTGTAGTTCCAGCTACTGAGGAAGGCTGAAGCCAGGGGC  50

seq1  TTGATTGCTCAAGCCCAAGAGTTCAAGGTTAATTTGGGCAAGCAAGACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGCTCAAGCCCAAGAGTTCAAGGTTAATTTGGGCAAGCAAGACCC  100

seq1  TTCTCTTAAAAAAAAAATGCAGATTACAGGGCACATTTGAGTTCCCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTAAAAAAAAAATGCAGATTACAGGGCACATTTGAGTTCCCTGGA  150

seq1  TCAGAGCCTGGGGTAGAGTATATATAGGCTTCCAGCATTAATATCTAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCCTGGGGTAGAGTATATATAGGCTTCCAGCATTAATATCTAACC  200

seq1  TGGGTCTGTTACATCAAGCTGAGAACCCTCCAACTGTCAGGAAGGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTGTTACATCAAGCTGAGAACCCTCCAACTGTCAGGAAGGTTTTG  250

seq1  AAATTATACTTCTCCCTTTTTCTTTTTTGATATGGTCTGAGTTACCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATACTTCTCCCTTTTTCTTTTTTGATATGGTCTGAGTTACCCCAA  300

seq1  ACTCTGAGTTGGTTCCGAGGCCTTCCTTGGGGCCATGGAGCTACAGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGTTGGTTCCGAGGCCTTCCTTGGGGCCATGGAGCTACAGGTGG  350

seq1  GCATCAGGTCAGAAAGGCCCTACTAAGGATTGGGGTGTAGTGGTCAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGGTCAGAAAGGCCCTACTAAGGATTGGGGTGTAGTGGTCAAGCA  400

seq1  TGTGATCCCAGCAGTCAGGAGCCTAAGGCAGGAAGATAATCACTAGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCCCAGCAGTCAGGAGCCTAAGGCAGGAAGATAATCACTAGTTTG  450

seq1  AGGCTAGATTGAGGCTACAGAGTGAGTTCCAGTCCCAAGATAGCCTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGATTGAGGCTACAGAGTGAGTTCCAGTCCCAAGATAGCCTGTGC  500

seq1  TGCAGTGGGGAATCCTATATCCTACATACATACATACAAACATACATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGGGGAATCCTATATCCTACATACATACATACAAACATACATACA  550

seq1  TACATACATACATACATACAGGAATGAAGATCAAATACTTCTCTGCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATACATACATACAGGAATGAAGATCAAATACTTCTCTGCCAGA  600

seq1  GGACCAGAGTTCAGTTCCCATCAACCCCTGGTCGACTTTTACAACTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGAGTTCAGTTCCCATCAACCCCTGGTCGACTTTTACAACTATTT  650

seq1  TGTACTTTCATCTCCTGGGGATTCAAAACCTTCTTCTGGCCTCTTTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTCATCTCCTGGGGATTCAAAACCTTCTTCTGGCCTCTTTGGGT  700

seq1  ACCTACGATTGGACACACACACACATAACACTTTAAAAAAATAATGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACGATTGGACACACACACACATAACACTTTAAAAAAATAATGAAAA  750

seq1  GAAAAGATATCCTGTTTAGGAGGCAGTGTCTCTCTTGAAGGAAGCCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGATATCCTGTTTAGGAGGCAGTGTCTCTCTTGAAGGAAGCCAAGA  800

seq1  AGTGAGTAGGCGAAGCCCAGGGTGTGACACCCAGGGTGGGCAGGCAGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTAGGCGAAGCCCAGGGTGTGACACCCAGGGTGGGCAGGCAGGGT  850

seq1  GTCAGCACCGAGTGCTTATTTAGCTAGACACAGTTCTTACCCGGGCAAGA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCAGCACCGAGTGCTTATTTAGCTAGACACAGTTCTTACTCGGGCAAGA  900

seq1  CAAACTCTTAGGCTTGACTCTGTGGCTTCAATGGTGTCATGCTGAAGGAG  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAAACTCTTAGGCTTGACTCTGTGGTTTCAATGGTGTCATGCTGAAGGAG  950

seq1  CTGCTGGCTTCCATGGACTAGCCTCAGTTTTACTAACACGAAGGGATGAT  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGCTGGCTTCCATGGACTAGCCTCAGTTTTACTAACACGAA-GGATGAT  999

seq1  GCAGTGTGAAAAGGGGAGTCCAGAGGCAGTGCTAGGTATTAAAAAGTGAT  1050
      ||||||||||| ||||||| |||| ||||||||| ||||  |||||||||
seq2  GCAGTGTGAAAGGGGGAGTTCAGA-GCAGTGCTA-GTAT--AAAAGTGAT  1045

seq1  GCTTTTGTGCCCATTTGAAAAAGAGCAGCCTGCTCGCCTCGGGCTCTGCC  1100
      || ||||||| ||||   |||||| ||| |||||   ||| ||||||| |
seq2  GC-TTTGTGCTCATT--GAAAAGA-CAG-CTGCTTCGCTC-GGCTCTG-C  1088

seq1  CTTTGTCCTTATAGTGAGGGGTATCCACACAGACTGTTCTGCCTTCTGCC  1150
       ||||||  |||||||||||| |||||| |||||||||||| |||||| |
seq2  ATTTGTC--TATAGTGAGGGG-ATCCAC-CAGACTGTTCTG-CTTCTGTC  1133

seq1  CTGGTGGAGACTTCCCATGCTGGGAACTTTCCAGTGTGGGCCCAGCTA  1198
         ||||||||||  |||||| |||||  ||||||||     ||||||
seq2  --TGTGGAGACTT--CATGCT-GGAAC--TCCAGTGT-----CAGCTA  1169