BAC Information

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BAC

Clone NameB6Ng01-013A10
Chromosome11 (Build37)
Map Location 73,992,122 - 74,201,547
singlet/doubletdoublet
Overlap geneOlfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4
Upstream geneTax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402
Downstream geneE130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013A10.bB6Ng01-013A10.g
ACCDH847951DH847952
length1,176975
definitionDH847951|Mus musculus domesticus DNA, BAC clone: B6Ng01-013A10, 5' end.DH847952|Mus musculus domesticus DNA, BAC clone: B6Ng01-013A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,992,122 - 73,993,305)(74,200,564 - 74,201,547)
sequence
gaattcaggtgttgttgctccatggtagtgagcccttaggagaagttgct
gacaggcaccttatacccagagagctctgagttccagctaccatcaattc
tacttttttctatgaggaagagcatttttcttttatctcttcctacgact
tgcaatttagcactccctctctgttctctccttagctatgcttgcttgag
tctgatctttcttagagagggcatagaaaactgcaatcattactgaacat
attatacctagttccatgacagcaacaactaaaatgaagctatatggagt
cgaagtatcttcttccaaagtgtttccattttttaacatggaaagtattt
tttatcattattattattaatcattccatttatttacatctcatatgata
tgccccttcatggttacccctcctcaaccccctcattccatatctgccct
ttgccccctcccctttgcccctatgagggtgctctcccacccacccactc
ctgccacacctactctggggcatcagtcctctatgggatcaagggcctcc
ccccccattgatgtcagacaaggtcatcctttgctacatatgtatctaga
gccatggatccctccctgtacactccttggttggtgggctagagagatgg
ttcagcagtttagagcactgactgctcttccaggggtcctgagttaaatt
cccagcaaccacgtggtggctcacaatcatctgaaatggaatctgatgtc
ctcttctggtgtgtctgaagacagctacagtgtactcacatatatagaat
aaacaaacaaatctttttttttaagtattttcttttttaacatctctctt
ttctttgtttggagattttactttattatttaaagttaacatttctttct
acagctgtccacagagatttctttcctttcttcagtgtctacatacatac
ataaaaaaatttacccatttctctttctctcttctttgggatatttaata
tcaactttaatatttattttctgtactaaatctctctaccctctgtctct
gataatacctcactcaacataataactgggttcagaggtcctctactggg
gtcttggcgtggagaatttctggctccaattcaggtccttgtgtatcctg
cacctccataagttccacaggccagc
gaattccccgtttaccccttcctttccccgttacagtcagtctctctcct
tgtattttggccaaggctccaggctggtatctgtcttccccaatatgaca
tgagatgcccctacccaagcgttgttttgagggacaaccccagggtggtc
tctgttcctgtcatgatataccagtgaactcctgaaagtgaggtcacctg
agacccattggccccacctgctcagtgaggtctccctggagtgtgagtga
gttgggaccaagagggagggtagagttaagctcactttatgtttaaccca
tgtctgagaaaacagaagaggaaacgggagtgtgatgttggcctccacta
cctgtgtgggactgtggatgcttctggtgtacaatgcttacacacggctt
ctgggactgagtccaggccccttacacttggcagcctccttgccctgagt
ggcttccctactttggctccagtgtgttttcatctctctttgacctaatg
cttgttctccatccccccttccttatcttcccagggaagtgtggattctg
gcctacagaaggctcctaattccagcagtttgggggtgccatccactact
ctgaccgtttaggcctgctgtctcactggccacctgcccagcgcaccagc
tgtctgttccacgtcctgacctggccatgaccttgccagatccttctcca
gacctgaaagccccaacctgtgcttctgacctcctgatgtgaccggctat
ctgagtcaactagcatcttgttttacatgcaggaaaagatctgggcaagg
gggactctgagtcccagggggctcagcgagaagctagggagctcgtctgc
cccagggacagagagggttgtgtgtggggagcagaggtactgcagaatgt
gggtgggtactgctgtcttgggtcgcagtgcatgcttcctggactgcttt
tcaggaatatccagtatctctgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_73992122_73993305
seq2: B6Ng01-013A10.b_47_1222

seq1  GAATTCAGGTGTTGTTGCTCCATGGTAGTGAGCCCTTAGGAGAAGTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGTTGTTGCTCCATGGTAGTGAGCCCTTAGGAGAAGTTGCT  50

seq1  GACAGGCACCTTATACCCAGAGAGCTCTGAGTTCCAGCTACCATCAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCACCTTATACCCAGAGAGCTCTGAGTTCCAGCTACCATCAATTC  100

seq1  TACTTTTTTCTATGAGGAAGAGCATTTTTCTTTTATCTCTTCCTACGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTTCTATGAGGAAGAGCATTTTTCTTTTATCTCTTCCTACGACT  150

seq1  TGCAATTTAGCACTCCCTCTCTGTTCTCTCCTTAGCTATGCTTGCTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTTAGCACTCCCTCTCTGTTCTCTCCTTAGCTATGCTTGCTTGAG  200

seq1  TCTGATCTTTCTTAGAGAGGGCATAGAAAACTGCAATCATTACTGAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCTTTCTTAGAGAGGGCATAGAAAACTGCAATCATTACTGAACAT  250

seq1  ATTATACCTAGTTCCATGACAGCAACAACTAAAATGAAGCTATATGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACCTAGTTCCATGACAGCAACAACTAAAATGAAGCTATATGGAGT  300

seq1  CGAAGTATCTTCTTCCAAAGTGTTTCCATTTTTTAACATGGAAAGTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTATCTTCTTCCAAAGTGTTTCCATTTTTTAACATGGAAAGTATTT  350

seq1  TTTATCATTATTATTATTAATCATTCCATTTATTTACATCTCATATGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATTATTATTATTAATCATTCCATTTATTTACATCTCATATGATA  400

seq1  TGCCCCTTCATGGTTACCCCTCCTCAACCCCCTCATTCCATATCTGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTTCATGGTTACCCCTCCTCAACCCCCTCATTCCATATCTGCCCT  450

seq1  TTGCCCCCTCCCCTTTGCCCCTATGAGGGTGCTCTCCCACCCACCCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCCTCCCCTTTGCCCCTATGAGGGTGCTCTCCCACCCACCCACTC  500

seq1  CTGCCACACCTACTCTGGGGCATCAGTCCTCTATGGGATCAAGGGCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACACCTACTCTGGGGCATCAGTCCTCTATGGGATCAAGGGCCTCC  550

seq1  CCCCCCATTGATGTCAGACAAGGTCATCCTTTGCTACATATGTATCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCATTGATGTCAGACAAGGTCATCCTTTGCTACATATGTATCTAGA  600

seq1  GCCATGGATCCCTCCCTGTACACTCCTTGGTTGGTGGGCTAGAGAGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGATCCCTCCCTGTACACTCCTTGGTTGGTGGGCTAGAGAGATGG  650

seq1  TTCAGCAGTTTAGAGCACTGACTGCTCTTCCAGGGGTCCTGAGTTAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAGTTTAGAGCACTGACTGCTCTTCCAGGGGTCCTGAGTTAAATT  700

seq1  CCCAGCAACCACGTGGTGGCTCACAATCATCTGAAATGGAATCTGATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAACCACGTGGTGGCTCACAATCATCTGAAATGGAATCTGATGTC  750

seq1  CTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACATATATAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACATATATAGAAT  800

seq1  AAACAAACAAATCTTTTTTTTTAAGTATTTTCTTTTTTAACATCTCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAATCTTTTTTTTTAAGTATTTTCTTTTTTAACATCTCTCTT  850

seq1  TTCTTTGTTTGGAGATTTTACTTTATTATTTAAAGTTAACATTTCTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTTTGGAGATTTTACTTTATTATTTAAAGTTAACATTTCTTTCT  900

seq1  ACAGCTGTCCACAAGAGATTTCTTTCCTTTCTTCAGTGTCTACATACATA  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTCCAC-AGAGATTTCTTTCCTTTCTTCAGTGTCTACATACATA  949

seq1  CATAAAAAAATTTACCCATTTCTCTTTCTCTCCTTCTTTTGGATATTTAA  1000
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  CATAAAAAAATTTACCCATTTCTCTTTCTCT-CTTCTTTGGGATATTTAA  998

seq1  TATCCAAACTTTAATATTTA-TTTCTGTACCTAAATCTCTCTACACTCTG  1049
      ||||  |||||||||||||| |||||||| |||||||||||||| |||||
seq2  TATC--AACTTTAATATTTATTTTCTGTA-CTAAATCTCTCTACCCTCTG  1045

seq1  TCCTCTGATAATTACTCACTCCAACATACATTACT-GGTTCAGAAGTCCT  1098
      | ||||||||||  |||||| ||||||| || ||| |||||||| |||||
seq2  T-CTCTGATAATACCTCACT-CAACATA-ATAACTGGGTTCAGAGGTCCT  1092

seq1  CTACTGGTGTCTTTGC-TGAAG-ATTTCTGGGCTTCTAAATTCTGTCTCT  1146
      ||||||| ||||| || || || |||||| |||| |  ||||| |   ||
seq2  CTACTGGGGTCTTGGCGTGGAGAATTTCT-GGCTCC--AATTCAGGTCCT  1139

seq1  TGTGTA-CCTGCAGCTCACATTAAGTTCCAGCAGCCAGC  1184
      |||||| |||||| ||| || |||||||||   ||||||
seq2  TGTGTATCCTGCACCTC-CA-TAAGTTCCACAGGCCAGC  1176

seq1: chr11_74200564_74201547
seq2: B6Ng01-013A10.g_69_1043 (reverse)

seq1  ACCCAGAGGATACTGGGATATTCCTGGAAAAGCAGTCCAGGAAGGCACTG  50
      ||||||| |||||| |||||||||| ||||||||||||||||| ||| ||
seq2  ACCCAGA-GATACT-GGATATTCCT-GAAAAGCAGTCCAGGAA-GCA-TG  45

seq1  CACTGCGACCCAAGACAGACAGTACCCACCCACCATTCTGCAGTTACCTC  100
      |||||||||||||||||| ||||||||||||| |||||||||| ||||||
seq2  CACTGCGACCCAAGACAG-CAGTACCCACCCA-CATTCTGCAG-TACCTC  92

seq1  TGCTCCCCACCACACAACCCTCTCTGTCCCTGGGGCAGACGAGCTCCCTA  150
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCA-CACACAACCCTCTCTGTCCCTGGGGCAGACGAGCTCCCTA  141

seq1  GCTTCTCGCTGAGCCCCCTGGGACTCAGAGTCCCCCTTGCCCAGATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCGCTGAGCCCCCTGGGACTCAGAGTCCCCCTTGCCCAGATCTTT  191

seq1  TCCTGCATGTAAAACAAGATGCTAGTTGACTCAGATAGCCGGTCACATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATGTAAAACAAGATGCTAGTTGACTCAGATAGCCGGTCACATCA  241

seq1  GGAGGTCAGAAGCACAGGTTGGGGCTTTCAGGTCTGGAGAAGGATCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCAGAAGCACAGGTTGGGGCTTTCAGGTCTGGAGAAGGATCTGGC  291

seq1  AAGGTCATGGCCAGGTCAGGACGTGGAACAGACAGCTGGTGCGCTGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATGGCCAGGTCAGGACGTGGAACAGACAGCTGGTGCGCTGGGCA  341

seq1  GGTGGCCAGTGAGACAGCAGGCCTAAACGGTCAGAGTAGTGGATGGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCAGTGAGACAGCAGGCCTAAACGGTCAGAGTAGTGGATGGCACC  391

seq1  CCCAAACTGCTGGAATTAGGAGCCTTCTGTAGGCCAGAATCCACACTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACTGCTGGAATTAGGAGCCTTCTGTAGGCCAGAATCCACACTTCC  441

seq1  CTGGGAAGATAAGGAAGGGGGGATGGAGAACAAGCATTAGGTCAAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGATAAGGAAGGGGGGATGGAGAACAAGCATTAGGTCAAAGAGA  491

seq1  GATGAAAACACACTGGAGCCAAAGTAGGGAAGCCACTCAGGGCAAGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAACACACTGGAGCCAAAGTAGGGAAGCCACTCAGGGCAAGGAGG  541

seq1  CTGCCAAGTGTAAGGGGCCTGGACTCAGTCCCAGAAGCCGTGTGTAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGTGTAAGGGGCCTGGACTCAGTCCCAGAAGCCGTGTGTAAGCA  591

seq1  TTGTACACCAGAAGCATCCACAGTCCCACACAGGTAGTGGAGGCCAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACACCAGAAGCATCCACAGTCCCACACAGGTAGTGGAGGCCAACAT  641

seq1  CACACTCCCGTTTCCTCTTCTGTTTTCTCAGACATGGGTTAAACATAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCCCGTTTCCTCTTCTGTTTTCTCAGACATGGGTTAAACATAAAG  691

seq1  TGAGCTTAACTCTACCCTCCCTCTTGGTCCCAACTCACTCACACTCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTAACTCTACCCTCCCTCTTGGTCCCAACTCACTCACACTCCAGG  741

seq1  GAGACCTCACTGAGCAGGTGGGGCCAATGGGTCTCAGGTGACCTCACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTCACTGAGCAGGTGGGGCCAATGGGTCTCAGGTGACCTCACTTT  791

seq1  CAGGAGTTCACTGGTATATCATGACAGGAACAGAGACCACCCTGGGGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTCACTGGTATATCATGACAGGAACAGAGACCACCCTGGGGTTG  841

seq1  TCCCTCAAAACAACGCTTGGGTAGGGGCATCTCATGTCATATTGGGGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAAAACAACGCTTGGGTAGGGGCATCTCATGTCATATTGGGGAAG  891

seq1  ACAGATACCAGCCTGGAGCCTTGGCCAAAATACAAGGAGAGAGACTGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATACCAGCCTGGAGCCTTGGCCAAAATACAAGGAGAGAGACTGACT  941

seq1  GTAACGGGGAAAGGAAGGGGTAAACGGGGAATTC  984
      ||||||||||||||||||||||||||||||||||
seq2  GTAACGGGGAAAGGAAGGGGTAAACGGGGAATTC  975