BAC Information

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BAC

Clone NameB6Ng01-013J05
Chromosome11 (Build37)
Map Location 40,634,007 - 40,749,216
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1
Downstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292, Gabrg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013J05.bB6Ng01-013J05.g
ACCDH848356DH848357
length1,116932
definitionDH848356|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J05, 5' end.DH848357|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,634,007 - 40,635,147)(40,748,671 - 40,749,216)
sequence
gaattcatagagacccacatacttttgcctcctgagtactgggattaaag
tcatgtgttaccattcctggctgacattcatttcttggcattacctactt
agcatttttagttttcttgattatctgaccattattttttttgcaagagt
acaaatgaccaccccttttattttttattttttctttagattcatttatt
tattttaattgaactaattttttattatattcagcacaatatatatttta
tagcaatcataaaaatgatggacatgttattaaatgaacataaatagata
aagtcttttggcttctttgtttggtttggctttagtagagctttaaaatc
ttggattttactgtggtacaaacccaaaataagaacaatttttagatatt
ggagttcattgtaataaggctgtacttcagtgtccctcatatcaccaaag
ggttttacctccatagtagctaagctaagaattgacagctctgctgtgcc
aaggaataaattgcaggcatgattatttggatatctatttcatacggtgg
tcagagctatttgacttgagtgattgtcatcattctcagcctacagggaa
caggttacattcatttaaaaaatggtgtgtgtattaagatggtttatcca
tgaaatcattcatcaactgtttcaatgaagaatggttctgcttgtagggt
ggcacagacattaggtgaggataagattctggtacattggctgtgatgat
tttgaaaagcattcatctcagaaaaagagtaacttataaggtcctcttct
tcaaaattgatacaataattataaatatcaagcaaaacattcagtctcac
tctttgtttttctcttacaagccacctctcaaattaattggctacattct
ttggctgtataaataattttgaaatatgtaaactgttttgaaaattgtag
catagtgtaaaaacatcaaataacatctactatagagacactgaagagag
catgatttcagacatatgtgataacagcagacactgtcacatacaacagc
agaaagttcaatatgatgtataattggatcatttctcaatccaaatagag
gacactggatgactgc
gaattctgttggtgatgcttgcatctataactcctgatctcattcttagg
ttttctatctccagagttatctccctttgtgatttctttattgtttttac
ttccatttttagatcctggatggttttgctcaattccttcatctgtttgg
ttgtgttttactgtaattctttgaggtgtttttgtgtttcctctttaagg
ttttctacctgtttacctgtgttctcttatatttctttaagggagttatt
tatgtccttcttaaattcctctatcgtcatcatgagatgtgattttaaat
cagaatcttgcttttctggtgtgttgagttatccaggacttgctgtggtg
ggacaactgagttctgttgatgctaagtatccttggtttctgttggtaag
gttcttgtgcttggttctcaccatctggttatctctggtgttagctagtc
ttgttgtctctgactttggctcatacatcctgcaagcctgtgtatcacca
ctcctgggagaccagttctctccaggaggtatttatatctggagatatgt
gacacagggtcagctccgaggtgcagatggaaatcagaaggatcctgtcc
tcagctgttctttggttcctgggtcctgacggccctaggccagtcctttt
gggccaggaatttgagtcgaagtggtggtctcacctgtgttttcaaatgt
gtcagcactcctgggagaccagttctcacctggtgggatttggctatgga
gagttgtggcacaaggtcaactccaggcacagatggaaaccagaaggttg
tccattattttcacagtattagtaattaaataactaatatagaaagggtt
tttccttagaaaaagacttaagatacgtttggcacctataaagaccagtg
gatacataaattcctttaatcattactcctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40634007_40635147
seq2: B6Ng01-013J05.b_46_1161

seq1  GAATTCATAGAGACCCACATACTTTTGCCTCCTGAGTACTGGGATTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAGACCCACATACTTTTGCCTCCTGAGTACTGGGATTAAAG  50

seq1  TCATGTGTTACCATTCCTGGCTGACATTCATTTCTTGGCATTACCTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTTACCATTCCTGGCTGACATTCATTTCTTGGCATTACCTACTT  100

seq1  AGCATTTTTAGTTTTCTTGATTATCTGACCATTATTTTTTTTGCAAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTTAGTTTTCTTGATTATCTGACCATTATTTTTTTTGCAAGAGT  150

seq1  ACAAATGACCACCCCTTTTATTTTTTATTTTTTCTTTAGATTCATTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGACCACCCCTTTTATTTTTTATTTTTTCTTTAGATTCATTTATT  200

seq1  TATTTTAATTGAACTAATTTTTTATTATATTCAGCACAATATATATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAATTGAACTAATTTTTTATTATATTCAGCACAATATATATTTTA  250

seq1  TAGCAATCATAAAAATGATGGACATGTTATTAAATGAACATAAATAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATCATAAAAATGATGGACATGTTATTAAATGAACATAAATAGATA  300

seq1  AAGTCTTTTGGCTTCTTTGTTTGGTTTGGCTTTAGTAGAGCTTTAAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTTGGCTTCTTTGTTTGGTTTGGCTTTAGTAGAGCTTTAAAATC  350

seq1  TTGGATTTTACTGTGGTACAAACCCAAAATAAGAACAATTTTTAGATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTTACTGTGGTACAAACCCAAAATAAGAACAATTTTTAGATATT  400

seq1  GGAGTTCATTGTAATAAGGCTGTACTTCAGTGTCCCTCATATCACCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCATTGTAATAAGGCTGTACTTCAGTGTCCCTCATATCACCAAAG  450

seq1  GGTTTTACCTCCATAGTAGCTAAGCTAAGAATTGACAGCTCTGCTGTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTACCTCCATAGTAGCTAAGCTAAGAATTGACAGCTCTGCTGTGCC  500

seq1  AAGGAATAAATTGCAGGCATGATTATTTGGATATCTATTTCATACGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATAAATTGCAGGCATGATTATTTGGATATCTATTTCATACGGTGG  550

seq1  TCAGAGCTATTTGACTTGAGTGATTGTCATCATTCTCAGCCTACAGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCTATTTGACTTGAGTGATTGTCATCATTCTCAGCCTACAGGGAA  600

seq1  CAGGTTACATTCATTTAAAAAATGGTGTGTGTATTAAGATGGTTTATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTACATTCATTTAAAAAATGGTGTGTGTATTAAGATGGTTTATCCA  650

seq1  TGAAATCATTCATCAACTGTTTCAATGAAGAATGGTTCTGCTTGTAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCATTCATCAACTGTTTCAATGAAGAATGGTTCTGCTTGTAGGGT  700

seq1  GGCACAGACATTAGGTGAGGATAAGATTCTGGTACATTGGCTGTGATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGACATTAGGTGAGGATAAGATTCTGGTACATTGGCTGTGATGAT  750

seq1  TTTGAAAAGCATTCATCTCAGAAAAAGAGTAACTTATAAGGTCCTCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAGCATTCATCTCAGAAAAAGAGTAACTTATAAGGTCCTCTTCT  800

seq1  TCAAAATTGATACAATAATTATAAATATCAAGCAAAACATTCAGTCTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTGATACAATAATTATAAATATCAAGCAAAACATTCAGTCTCAC  850

seq1  TCTTTGTTTTTCTCTTACAAGCCACCTCTCAAATTAATTGGCTACATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TCTTTGTTTTTCTCTTACAAGCCACCTCTCAAATTAATTGGCTACATT--  898

seq1  TTTTGGCTGTATAAATAATTTTGAAATATGTAAACTGTTTTGAAAAATTG  950
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTTGGCTGTATAAATAATTTTGAAATATGTAAACTGTTTTG-AAAATTG  947

seq1  TAGCATAGTGTAAAAACATCAAATAAACAATCCTACTAATAGAGACACTG  1000
      |||||||||||||||||||||||| ||||   ||||| ||||||||||||
seq2  TAGCATAGTGTAAAAACATCAAAT-AACA--TCTACT-ATAGAGACACTG  993

seq1  AAAGAGAAGCATGATTTCAAGACCATTATGTGATACACAGCAAGACACTG  1050
       ||||| ||||||||||| ||||   ||||||||| ||||| ||||||||
seq2  -AAGAG-AGCATGATTTC-AGAC--ATATGTGATA-ACAGC-AGACACTG  1036

seq1  TCACATACAAACAGGCAGAAAGTTC-ATATGGATTGTATAATATTGGATC  1099
      |||||||| |||| ||||||||||| |||||   ||||||  ||||||||
seq2  TCACATAC-AACA-GCAGAAAGTTCAATATG--ATGTATA--ATTGGATC  1080

seq1  TATTTCTCCAATACCAAATTAGAGAGACCACTGGATGACTGC  1141
       |||||| |||| ||||||   ||||  ||||||||||||||
seq2  -ATTTCT-CAAT-CCAAAT---AGAGGACACTGGATGACTGC  1116

seq1: chr11_40748671_40749216
seq2: B6Ng01-013J05.g_463_998 (reverse)

seq1  TAAAGAGTAAATGATTAAAGAAATTTTATGTATCCACTGGTCTTTATTAG  50
      ||| |||| ||||||||||| || |||||||||||||||||||||| |||
seq2  TAAGGAGT-AATGATTAAAGGAA-TTTATGTATCCACTGGTCTTTA-TAG  47

seq1  GTTGCCAAACGTCTCTTTAAGTCTTTTTCTTAAGAAAAAAACCCTTTCTA  100
      | |||||||||| || |||||||||||||| | |  ||||||||||||||
seq2  G-TGCCAAACGTATC-TTAAGTCTTTTTCTAAGG--AAAAACCCTTTCTA  93

seq1  TATTAGTTAATTTAATTAACTAATACTGTGAAAAATAATGGACAACCTTC  150
      |||||||| |||||||| |||||||||||| |||||||||||||||||||
seq2  TATTAGTT-ATTTAATT-ACTAATACTGTG-AAAATAATGGACAACCTTC  140

seq1  TGGTTTCCATCTGTGCCTGGAGTTGACCTTGTGCCACAACTCTCCATAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCATCTGTGCCTGGAGTTGACCTTGTGCCACAACTCTCCATAGC  190

seq1  CAAATCCCACCAGGTGAGAACTGGTCTCCCAGGAGTGCTGACACATTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCACCAGGTGAGAACTGGTCTCCCAGGAGTGCTGACACATTTGA  240

seq1  AAACACAGGTGAGACCACCACTTCGACTCAAATTCCTGGCCCAAAAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGGTGAGACCACCACTTCGACTCAAATTCCTGGCCCAAAAGGAC  290

seq1  TGGCCTAGGGCCGTCAGGACCCAGGAACCAAAGAACAGCTGAGGACAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTAGGGCCGTCAGGACCCAGGAACCAAAGAACAGCTGAGGACAGGA  340

seq1  TCCTTCTGATTTCCATCTGCACCTCGGAGCTGACCCTGTGTCACATATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGATTTCCATCTGCACCTCGGAGCTGACCCTGTGTCACATATCT  390

seq1  CCAGATATAAATACCTCCTGGAGAGAACTGGTCTCCCAGGAGTGGTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATATAAATACCTCCTGGAGAGAACTGGTCTCCCAGGAGTGGTGATA  440

seq1  CACAGGCTTGCAGGATGTATGAGCCAAAGTCAGAGACAACAAGACTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTTGCAGGATGTATGAGCCAAAGTCAGAGACAACAAGACTAGCT  490

seq1  AACACCAGAGATAACCAGATGGTGAGAACCAAGCACAAGAACCTTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAGAGATAACCAGATGGTGAGAACCAAGCACAAGAACCTTA  536