BAC Information

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BAC

Clone NameB6Ng01-013J16
Chromosome11 (Build37)
Map Location 61,200,055 - 61,339,823
singlet/doubletdoublet
Overlap geneLOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2
Upstream geneLrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik
Downstream geneGrap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013J16.bB6Ng01-013J16.g
ACCDH848378DH848379
length1,117929
definitionDH848378|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J16, 5' end.DH848379|Mus musculus domesticus DNA, BAC clone: B6Ng01-013J16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,200,055 - 61,201,190)(61,338,893 - 61,339,823)
sequence
gaattcacaaaaggccctgagccggcctacctggtgtgcacaaccacgga
aaagagacctctgtcacagacagggtggaaaacaagggctgctgcccaag
gtgctcctctgaactgcatatactacatatatcacacatgcacctgcact
tgcaaatgtgatcacatggcctgcttataccctgccccccccacacacac
acacactaaaagtaaatgataataggggctggagggatggttcaatgagt
aagagcactgactgctcttccataggtcctaagttcaaatcccagcaact
acatggtggctcacaaccatccataatgagatctgatgtcctcttctggt
gcatctgaagacagctacagtgtacttatgtataataataaataaatctt
tgggcccgagcaagcagggttgacccaagtgagcagagatactaaattca
attttaacaaccacatgaaggctcacgaccatctgtacagctacagtgtg
ctcatatacataaaataaataaataaatctttaaaaaaataaatgataat
aaataaataaaacgtggtttaaaaacacctgagacttgtggatttaaaag
ttccagtccaaccgggcgatggtggcgcacacctttaatcccagcacttg
ggaggcagaggtaggcggatttctgagttcgaggccagcttggtctacaa
agtgagttccaggacagccagggctacacagagaaaccctgggctcaaaa
aacaaacaaacaaaaaaaaaaaaaacaaagttccagtccctgggtggtta
gcactggggtctgaggtgagacagtgccacgtggtggaacatgtggtaga
gcaaacttgcagtgtgcaatagaaaagaggccaaggtctcaccacttcct
ttgaagtcactcagccaggtgaccagagtcctccttgctaggcctcggct
ccaaacttcccagcactctagagacaagctctacaccggggcaccacagc
tctggttggtcgcaggcacggggtagcttctattctgtaactgacttgct
tgaaccccgtggggcactaggtgactgtgggaggtggctccaacaaaggt
ttccattccatcggcat
gaattcaatccaggaaaagacccttggttagatgagtggtaagtgaagga
ttccagaatggccagggcaagagtcaagctcagtagggcctgtaacagaa
ggcagagagtttctttggtgtgtccaaggagatagggagtctggccaggc
taagcatggaagctgtgtgactatctccactagttcacatcttttggggt
tcttgaagagttcatttttaaaggagataatgagccagggaacattataa
aagttactgttctggaagctgaagaatgctaaggcagcttatctaggtac
cctatgtgagcaaagcaagactgtgtccagggaaggaactggactgtgcc
aggactgagggcagtggtagtaactttagtgtgcttgtaggaaaccatag
tctttacctaggcaggcagtcctaaaaaaatcctcttttgttctgaggat
aattgtggaaacatgtttgaaattttggaagcaccaggtggtgtgttgat
attcctttaatcaccgcactttattattatttatagaataaatattaata
gtaacaatagaggcagaaatatttttcacactagatttgactgtagttta
aaaatgcatatttgttactaattatctttttgttatactaaagcattgtt
acagctgggagggcggtgcatacctttgattccagcacttgggaggcaga
ggcaggtggatctcttgagtttagcctggtctgcaaagtgagttccagaa
tagcagagtacacagagaaaccctgttttgaatacaaaacaccaacaaca
aaaaaacagtttaagggctgtgggcgttctaccttggtcacatgacctcc
ctgtcttccttcctaaagggcagacaatacaagggggcttaataattacc
atgataggaaatgtaagagtacttacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61200055_61201190
seq2: B6Ng01-013J16.b_45_1161

seq1  GAATTCACAAAAGGCCCTGAGCCGGCCTACCTGGTGTGCACAACCACGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAAGGCCCTGAGCCGGCCTACCTGGTGTGCACAACCACGGA  50

seq1  AAAGAGACCTCTGTCACAGACAGGGTGGAAAACAAGGGCTGCTGCCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACCTCTGTCACAGACAGGGTGGAAAACAAGGGCTGCTGCCCAAG  100

seq1  GTGCTCCTCTGAACTGCATATACTACATATATCACACATGCACCTGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCTCTGAACTGCATATACTACATATATCACACATGCACCTGCACT  150

seq1  TGCAAATGTGATCACATGGCCTGCTTATACCCTGCCCCCCCCACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGTGATCACATGGCCTGCTTATACCCTGCCCCCCCCACACACAC  200

seq1  ACACACTAAAAGTAAATGATAATAGGGGCTGGAGGGATGGTTCAATGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTAAAAGTAAATGATAATAGGGGCTGGAGGGATGGTTCAATGAGT  250

seq1  AAGAGCACTGACTGCTCTTCCATAGGTCCTAAGTTCAAATCCCAGCAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACTGACTGCTCTTCCATAGGTCCTAAGTTCAAATCCCAGCAACT  300

seq1  ACATGGTGGCTCACAACCATCCATAATGAGATCTGATGTCCTCTTCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTGGCTCACAACCATCCATAATGAGATCTGATGTCCTCTTCTGGT  350

seq1  GCATCTGAAGACAGCTACAGTGTACTTATGTATAATAATAAATAAATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGAAGACAGCTACAGTGTACTTATGTATAATAATAAATAAATCTT  400

seq1  TGGGCCCGAGCAAGCAGGGTTGACCCAAGTGAGCAGAGATACTAAATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCGAGCAAGCAGGGTTGACCCAAGTGAGCAGAGATACTAAATTCA  450

seq1  ATTTTAACAACCACATGAAGGCTCACGACCATCTGTACAGCTACAGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACAACCACATGAAGGCTCACGACCATCTGTACAGCTACAGTGTG  500

seq1  CTCATATACATAAAATAAATAAATAAATCTTTAAAAAAATAAATGATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATACATAAAATAAATAAATAAATCTTTAAAAAAATAAATGATAAT  550

seq1  AAATAAATAAAACGTGGTTTAAAAACACCTGAGACTTGTGGATTTAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAAACGTGGTTTAAAAACACCTGAGACTTGTGGATTTAAAAG  600

seq1  TTCCAGTCCAACCGGGCGATGGTGGCGCACACCTTTAATCCCAGCACTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTCCAACCGGGCGATGGTGGCGCACACCTTTAATCCCAGCACTTG  650

seq1  GGAGGCAGAGGTAGGCGGATTTCTGAGTTCGAGGCCAGCTTGGTCTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAGGTAGGCGGATTTCTGAGTTCGAGGCCAGCTTGGTCTACAA  700

seq1  AGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCT-GGCTCAAAA  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGGGCTCAAAA  750

seq1  AACAAACAAACAAAAAAAAAAAAAACAAAGTTCCAGTCCCTGGGTGGTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAAAAAAAAAAAAACAAAGTTCCAGTCCCTGGGTGGTTA  800

seq1  GCACTGGGGTCTGAGGTGAGACAGTGCCACGTGGTGGAACATGTGGTAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGGTCTGAGGTGAGACAGTGCCACGTGGTGGAACATGTGGTAGA  850

seq1  GCAAACTTGCAGTGTGCAATAGAAAAGA-GCCAAGGTCTCACCACTTCCT  898
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCAAACTTGCAGTGTGCAATAGAAAAGAGGCCAAGGTCTCACCACTTCCT  900

seq1  TTGAAGTCACTCAGCCA-GTGACCAGAAGTCCTCC-TGCTAGGCCTCGCC  946
      ||||||||||||||||| |||||||| |||||||| |||||||||||| |
seq2  TTGAAGTCACTCAGCCAGGTGACCAG-AGTCCTCCTTGCTAGGCCTCGGC  949

seq1  TCCCAAACTTCCCAGCACCTCTTAAGAAGACAAAGCTTCTAACACCGGGG  996
      | ||||||||||||||| ||||  || |||| |||| ||| |||||||||
seq2  T-CCAAACTTCCCAGCA-CTCT--AG-AGAC-AAGC-TCT-ACACCGGGG  991

seq1  CAACCACAGCTCCTGTGTGTCCGCAGGGCCACGGGGTAGCTTCTATTCTG  1046
      | ||||||||| |||  ||  ||||||  |||||||||||||||||||||
seq2  C-ACCACAGCT-CTGGTTGGTCGCAGG--CACGGGGTAGCTTCTATTCTG  1037

seq1  TAACTGACTGTGCTTTGAACACCCGTGGTGCACTTAGGTGACTTTGTGGA  1096
      ||||||||| ||| |||||| ||||||| |||| ||||||||| || |||
seq2  TAACTGACT-TGC-TTGAAC-CCCGTGGGGCAC-TAGGTGACTGTG-GGA  1082

seq1  GGTGGGCTCAAACAAAGAGGTTTTCCACTTCCATCCGCAT  1136
      ||| ||||| ||||||   | |||||| ||||||| ||||
seq2  GGT-GGCTCCAACAAA---GGTTTCCA-TTCCATCGGCAT  1117

seq1: chr11_61338893_61339823
seq2: B6Ng01-013J16.g_65_993 (reverse)

seq1  AAAGTTAAGTACTCTTTCCATTTCTCTCATGGTAATTAATAAGCCCCCTT  50
      |||| ||||||||||| |  || || |||||||||||| |||||||||||
seq2  AAAG-TAAGTACTCTTACATTTCCTATCATGGTAATTATTAAGCCCCCTT  49

seq1  GTATTGTCTG-CCTTTAGGAAGGAAGACAGGGA-GTCATGTGACCAAGGT  98
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  GTATTGTCTGCCCTTTAGGAAGGAAGACAGGGAGGTCATGTGACCAAGGT  99

seq1  AGAACG-CCACAGCCCTTAAACTGTTTTTTTGTTGTTGTTGTTTTGTATT  147
      |||||| ||||||||||||||||||||||||||||||| ||||||||| |
seq2  AGAACGCCCACAGCCCTTAAACTGTTTTTTTGTTGTTGGTGTTTTGTA-T  148

seq1  TCAAAACAGGGTTTCTCTGTGTAACTCTGGCTATTCTGGAACTCACTTTG  197
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  TCAAAACAGGGTTTCTCTGTGT-ACTCT-GCTATTCTGGAACTCACTTTG  196

seq1  CAGACCAGGCTAAACTCAAGAGATCCACCTGCCTCTGCCTCCCAAGTGCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAGGCTAAACTCAAGAGATCCACCTGCCTCTGCCTCCCAAGTGCT  246

seq1  GGAATCAAAGGTATGCACCGCCCTCCCAGCTGTAACAATGCTTTAGTATT  297
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGAATCAAAGGTATGCACCGCCCTCCCAGCTGTAACAATGCTTTAGTA-T  295

seq1  AACAAAAAGATAATTAGTAACAAATATGCATTTTTAAACTACAGTCAAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAGATAATTAGTAACAAATATGCATTTTTAAACTACAGTCAAAT  345

seq1  CTAGTGTGAAAAATATTTCTGCCTCTATTGTTACTATTAATATTTATTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTGAAAAATATTTCTGCCTCTATTGTTACTATTAATATTTATTCT  395

seq1  ATAAATAATAATAAAGTGCGGTGATTAAAGGAATATCAACACACCACCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATAATAAAGTGCGGTGATTAAAGGAATATCAACACACCACCTG  445

seq1  GTGCTTCCAAAATTTCAAACATGTTTCCACAATTATCCTCAGAACAAAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCCAAAATTTCAAACATGTTTCCACAATTATCCTCAGAACAAAAG  495

seq1  AGGATTTTTTTAGGACTGCCTGCCTAGGTAAAGACTATGGTTTCCTACAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTTTTAGGACTGCCTGCCTAGGTAAAGACTATGGTTTCCTACAA  545

seq1  GCACACTAAAGTTACTACCACTGCCCTCAGTCCTGGCACAGTCCAGTTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTAAAGTTACTACCACTGCCCTCAGTCCTGGCACAGTCCAGTTCC  595

seq1  TTCCCTGGACACAGTCTTGCTTTGCTCACATAGGGTACCTAGATAAGCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGACACAGTCTTGCTTTGCTCACATAGGGTACCTAGATAAGCTG  645

seq1  CCTTAGCATTCTTCAGCTTCCAGAACAGTAACTTTTATAATGTTCCCTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCATTCTTCAGCTTCCAGAACAGTAACTTTTATAATGTTCCCTGG  695

seq1  CTCATTATCTCCTTTAAAAATGAACTCTTCAAGAACCCCAAAAGATGTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATCTCCTTTAAAAATGAACTCTTCAAGAACCCCAAAAGATGTGA  745

seq1  ACTAGTGGAGATAGTCACACAGCTTCCATGCTTAGCCTGGCCAGACTCCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGGAGATAGTCACACAGCTTCCATGCTTAGCCTGGCCAGACTCCC  795

seq1  TATCTCCTTGGACACACCAAAGAAACTCTCTGCCTTCTGTTACAGGCCCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCTTGGACACACCAAAGAAACTCTCTGCCTTCTGTTACAGGCCCT  845

seq1  ACTGAGCTTGACTCTTGCCCTGGCCATTCTGGAATCCTTCACTTACCACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCTTGACTCTTGCCCTGGCCATTCTGGAATCCTTCACTTACCACT  895

seq1  CATCTAACCAAGGGTCTTTTCCTGGATTGAATTC  931
      ||||||||||||||||||||||||||||||||||
seq2  CATCTAACCAAGGGTCTTTTCCTGGATTGAATTC  929