BAC Information

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BAC

Clone NameB6Ng01-013K16
Chromosome17 (Build37)11 (Build37)
Map Location 13,204,138 - 13,205,64850,736,590 - 50,737,634
singlet/doubletsingletsinglet
Overlap geneSod2
Upstream genePark2, Agpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap
Downstream geneGpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013K16.bB6Ng01-013K16.g
ACCDH848426DH848427
length4251,048
definitionDH848426|Mus musculus domesticus DNA, BAC clone: B6Ng01-013K16, 5' end.DH848427|Mus musculus domesticus DNA, BAC clone: B6Ng01-013K16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,204,138 - 13,205,648)(50,736,590 - 50,737,634)
sequence
catcccattgagaaagaagaaggaaccaagaggagataggaagggaagtg
agtagtaggtggaagtaagagcaaagcacagtcacacctatgtatgaaaa
tgtcaaaaataagtcaggtggtggtggcacacacctttaatcccagaact
tgggaggcagaggcaggtggatttctgagttcgaggccagcctggtctac
aaagtgagctccaggacagccagggctatacagagaaaccctgcctcaga
aaaaaaaaaaaaaagtcaaaataaaacattggtttttatgccactaaaaa
aaaaaattaaatataagtgtggtgagaattttggtttctttaaaacacac
acagagaggagagagagagagagagagagagagagagagagagagagaga
gagagagagagagagagagagagag
gaattctctggcatcctgaaagggacgtggatgccttccttcctgggtta
tatttatgaggattttctcgggcatggattttttggtgcaaaaaaaggcc
agaccttctgctaaaagattttccacattctttgcatgtataggattttt
ccaaagtatgagttcttaggtgcttgcagagggatgcactatggctgaag
gcctttccacactctttacatatatagggcttctctccagtgtgagttct
ttgatgttgaataagggcagaactttggctgaaagctttcaaacagtctt
tacactgaaatagtctctctccagtatggtttttcagatgtttgcgaagg
gatgagttgtgaatgaaggctttttcgcaagtactacatttatagcgttt
ctctactgtcttgagttttggttgactaagtaaagttgaattttcctcga
ggctatttctttgtgttttttctcctgcaatcttttgcttaccaattgac
ttcaggccaacgcttggaccaaatttaaaattcttacggcttttatctat
agtaagaatttttgtatggttgattgaaattatttctaagctttcatttg
tatcctgtgttctaaaactgttgtcaggtctgcaggattttcctgacgtg
aagtcccaggcctcatcccttttgagttgtttcctctttaattcctgaaa
caatgactctttagtttgagttgattttgtggtttgaagactgccgtgac
atcctggaagcaaaaccaaaattaccagtgatagatggtggttagctcag
actaaacttataggaagaatgttaatgttacctaattaaatactacatgc
ctatagatattagcaagaaagaagaaatgggaaataaacactttataaga
tactggatgagtggccaatcaattggagtggaacaaaaggataacaagct
tcatctaaggagttgaagagctaatgtaaccagagaaggttagagaagca
cagaatctgggaagtgtagcctgatggaactatggaactctggaatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_13204138_13205648
seq2: B6Ng01-013K16.b_182_432 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTTCAGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAGGTGTCTCTCTCTCTCTCACACACACACACACACACACACAAAATGCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GCATGCACTGCCCACTGCTAGGATAAGTGTTAAGGAAAACCTGGGCAAAC  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTCGTATTTAGAGACTATGACCTTTCCACTGCTGGCTCTGGACCCTGGGA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAAGACACGTAGTCACGTAGCCATCCATGGGATACAGGAGTAATTATG  250
                                                        
seq2  --------------------------------------------------  0

seq1  GGGCTGCTTTCAGTGTTATATGTAAAGTGCTTAGAGTAGTGCTTTTGATT  300
                                                        
seq2  --------------------------------------------------  0

seq1  ATTATTTCTAATGTGAAGAACTCACTTGCCCCAGTAAAACAAGTTTTTTA  350
                                                        
seq2  --------------------------------------------------  0

seq1  TGAAAATAAAAACAAAAACAACAAAAAGAAAAACTTTGTGCAATGAAGAG  400
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGTTTACTTGTCTTTAAACAAAAACAAATCCTCGGGGTGGAGAGATGG  450
                                                        
seq2  --------------------------------------------------  0

seq1  TTCAGTAGTTAAGAGCATTGACTACACAGAGAAACCCAGTCTTGAAAAAC  500
                                                        
seq2  --------------------------------------------------  0

seq1  CAAAAAAAAAAAAAAACAAAAAACATTGACTACTCTTCTAGAGGTCCTGA  550
                                                        
seq2  --------------------------------------------------  0

seq1  GTTCAATTCCCAGCAACCACATGGTGGATCACAACCATCTGTAATGGGAT  600
                                                        
seq2  --------------------------------------------------  0

seq1  CTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAGTGTAGTCATATA  650
                                                        
seq2  --------------------------------------------------  0

seq1  TATAAAATAAATAAAAGGAAATCCTAAAAAGCAAAACAAAACACCAAAAT  700
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAACAACAGCAACAAACCAAACTCTCTACTCTTTAGCCACTCTGTACA  750
                                                        
seq2  --------------------------------------------------  0

seq1  CTAATATATTTTCTGTAAGACGTTAGATAGTTATATGGCCGCCATGGTTC  800
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTGACTTCCTGTGTGGCTTTAGTTATCTTCTATTTAGGGAGGTGAGGG  850
                                                        
seq2  --------------------------------------------------  0

seq1  CTATAGTATAGATCTCCTCCCTTGATTTTTTCTCCCTCTTGCATGTGCCT  900
                                                        
seq2  --------------------------------------------------  0

seq1  TAAATTTCTGGTTTTGTTGGTTCTTCTCCAGTCCTTTTCTCTGTGGTGGT  950
                                                        
seq2  --------------------------------------------------  0

seq1  GATGCTGGGATTGAACGTGGTCTTCCATTGCTAGGCCAACCTTCTCTGCT  1000
                                                        
seq2  --------------------------------------------------  0

seq1  GAGCTACATTCCCAGCATAATGTTGCTTGTGCTGTTTATGTAAACCATGT  1050
                                                        
seq2  --------------------------------------------------  0

seq1  TGTAAAAGGCAGCCTGACTTACTCACTAGTAATAATCACTTTGACCATGA  1100
                                                        
seq2  --------------------------------------------------  0

seq1  CTTGATACTTGTCAGGTTTTGGCTATGACCAGGATATAAGGTGTGTTGAG  1150
                                                        
seq2  --------------------------------------------------  0

seq1  GTCTCCTCCTCTTCTTCTTCCTCCTCCTCCTCCTCCTCTCCCTCCTTCTC  1200
                                          |||| |||  ||||
seq2  ------------------------------------TCTCTCTCTCTCTC  14

seq1  TTCTTTCTCCTGTTGATGTTTCTGTTACACAGTTTGTCCCACCTGAAGCA  1250
       ||| |||||| |   ||| | | ||| | |                   
seq2  -TCTCTCTCCTCTCTGTGTGTGTTTTAAAGA-------------------  44

seq1  TTAGCCATGTTTGTAAAAGATAATTATGTTTTAGCCAATAGAATGAGAGA  1300
        | |||   || |  |  | | |||| |||          |||      
seq2  --AACCAAAATTCT-CACCACACTTATATTT----------AAT------  75

seq1  AGTGAGATGTTGGACCCATTTGATTCAGTTGATTTGCTTCATGTAGAATC  1350
               ||       |||  || ||| |        |||  | || |
seq2  ---------TT-------TTTTTTTTAGTGG--------CAT-AAAAACC  100

seq1  AGTGCTATATTTCTTTCTTTCTTATTTTGTTTTTGTTTTTTTTGAGACAG  1400
      | || | |||||         | | ||| ||||| |||||| |||| |||
seq2  AATGTTTTATTT---------TGACTTT-TTTTTTTTTTTTCTGAGGCAG  140

seq1  GGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACTAGG  1450
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  GGTTTCTCTGTATAGCCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGG  190

seq1  CTGGTCTCGAACTCCGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGA  1500
      |||| ||||||||| ||||||| |||||||||||||||||||| ||||||
seq2  CTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTTCTGGGA  240

seq1  TTAAAGGTGTG  1511
      |||||||||||
seq2  TTAAAGGTGTG  251

seq1: chr11_50736590_50737634
seq2: B6Ng01-013K16.g_67_1114

seq1  GAATTCTCTGGCATCCTGAAAGGGACGTGGATGCCTTCCTTCCTGGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCATCCTGAAAGGGACGTGGATGCCTTCCTTCCTGGGTTA  50

seq1  TATTTATGAGGATTTTCTCGGGCATGGATTTTTTGGTGCAAAAAAAGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGAGGATTTTCTCGGGCATGGATTTTTTGGTGCAAAAAAAGGCC  100

seq1  AGACCTTCTGCTAAAAGATTTTCCACATTCTTTGCATGTATAGGATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCTGCTAAAAGATTTTCCACATTCTTTGCATGTATAGGATTTTT  150

seq1  CCAAAGTATGAGTTCTTAGGTGCTTGCAGAGGGATGCACTATGGCTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTATGAGTTCTTAGGTGCTTGCAGAGGGATGCACTATGGCTGAAG  200

seq1  GCCTTTCCACACTCTTTACATATATAGGGCTTCTCTCCAGTGTGAGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCCACACTCTTTACATATATAGGGCTTCTCTCCAGTGTGAGTTCT  250

seq1  TTGATGTTGAATAAGGGCAGAACTTTGGCTGAAAGCTTTCAAACAGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTTGAATAAGGGCAGAACTTTGGCTGAAAGCTTTCAAACAGTCTT  300

seq1  TACACTGAAATAGTCTCTCTCCAGTATGGTTTTTCAGATGTTTGCGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGAAATAGTCTCTCTCCAGTATGGTTTTTCAGATGTTTGCGAAGG  350

seq1  GATGAGTTGTGAATGAAGGCTTTTTCGCAAGTACTACATTTATAGCGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTTGTGAATGAAGGCTTTTTCGCAAGTACTACATTTATAGCGTTT  400

seq1  CTCTACTGTCTTGAGTTTTGGTTGACTAAGTAAAGTTGAATTTTCCTCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTGTCTTGAGTTTTGGTTGACTAAGTAAAGTTGAATTTTCCTCGA  450

seq1  GGCTATTTCTTTGTGTTTTTTCTCCTGCAATCTTTTGCTTACCAATTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTTCTTTGTGTTTTTTCTCCTGCAATCTTTTGCTTACCAATTGAC  500

seq1  TTCAGGCCAACGCTTGGACCAAATTTAAAATTCTTACGGCTTTTATCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCCAACGCTTGGACCAAATTTAAAATTCTTACGGCTTTTATCTAT  550

seq1  AGTAAGAATTTTTGTATGGTTGATTGAAATTATTTCTAAGCTTTCATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAATTTTTGTATGGTTGATTGAAATTATTTCTAAGCTTTCATTTG  600

seq1  TATCCTGTGTTCTAAAACTGTTGTCAGGTCTGCAGGATTTTCCTGACGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGTGTTCTAAAACTGTTGTCAGGTCTGCAGGATTTTCCTGACGTG  650

seq1  AAGTCCCAGGCCTCATCCCTTTTGAGTTGTTTCCTCTTTAATTCCTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCAGGCCTCATCCCTTTTGAGTTGTTTCCTCTTTAATTCCTGAAA  700

seq1  CAATGACTCTTTAGTTTGAGTTGATTTTGTGGTTTGAAGACTGCCGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTCTTTAGTTTGAGTTGATTTTGTGGTTTGAAGACTGCCGTGAC  750

seq1  ATCCTGGAAGCAAAACCAAAATTACCAGTGATAGAT-GTGGTTAGCTCAG  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCCTGGAAGCAAAACCAAAATTACCAGTGATAGATGGTGGTTAGCTCAG  800

seq1  ACTAAACTTATAGGAAGAATGTTAATGTTACCTAATTAAATACTACATGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACTTATAGGAAGAATGTTAATGTTACCTAATTAAATACTACATGC  850

seq1  CTATAGATATTAGCAAGAAAGAAGAAATGGAAAATAAACACTTTATAAGA  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTATAGATATTAGCAAGAAAGAAGAAATGGGAAATAAACACTTTATAAGA  900

seq1  TACTGGATGAGT-GCCAATCAATTGGAGT-GAACAAAAGGATAAACAAGC  947
      |||||||||||| |||||||||||||||| |||||||||||| |||||||
seq2  TACTGGATGAGTGGCCAATCAATTGGAGTGGAACAAAAGGAT-AACAAGC  949

seq1  -TCACCTAAGGAGGTG-AGAGCTAGAGTAACCAGGAGAGGGTTAGAGAGG  995
       ||| |||||||| || |||||||  ||||||| |||| ||||||||| |
seq2  TTCATCTAAGGAGTTGAAGAGCTAATGTAACCA-GAGAAGGTTAGAGAAG  998

seq1  CACAGA--CTGGGAAGTGTAGCCTGGTATGGAACTATGGAACTCATGAAT  1043
      ||||||  |||||||||||||||||  |||||||||||||||||  ||||
seq2  CACAGAATCTGGGAAGTGTAGCCTG--ATGGAACTATGGAACTCTGGAAT  1046

seq1  TA  1045
      ||
seq2  TA  1048