BAC Information

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BAC

Clone NameB6Ng01-013M22
Chromosome11 (Build37)
Map Location 107,213,467 - 107,360,591
singlet/doubletdoublet
Overlap genePitpnc1, Psmd12
Upstream gene2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692
Downstream geneA830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca, Apoh, LOC100041381, Ccdc46
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013M22.bB6Ng01-013M22.g
ACCDH848531DH848532
length1,083272
definitionDH848531|Mus musculus domesticus DNA, BAC clone: B6Ng01-013M22, 5' end.DH848532|Mus musculus domesticus DNA, BAC clone: B6Ng01-013M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,359,508 - 107,360,591)(107,213,467 - 107,213,738)
sequence
gaattcaggacctctggaagagtagtcagtgctcttaaccgctgagccat
ctctccagtcccttttcagtcatttttaaagtatagtaattatattacct
agaaccagggtgtggaactggagattctatagagataatgaacttggcct
gttatgggcataactagacctgaagcctggaaggagccctatatgagtga
cacttgaggggccatgccaagtgacacaggtctgtcatcctagatacttc
gccagtttatgcattattccaagttcaaggcttactgggttagagtgagc
tcaaatctagcctgagcaacttagtgataccctgtcaaaaaacaaaaagt
aaaaatgtaaggccaggtttatagttcatgggcaagctctcatatccgaa
gctctgggctggacttcccataaacaaaaaaaccttaggtgtcaggcata
agtttatacaaaggatgtgggagaagtgaacagctcccaaagccaaacca
caataccatcagtagtgactcctgtaacaggatttaacagaaagcagctc
gtaacatcatcatctgacttagttaacgaccagctaaaccgggcttggga
gtgcacacctgaagcctggcttctggaaaggggagggaggctccacaaca
cagcaaacttcaggtcagcctaggctacggaagaccccctcaaaaccagc
aggatgtcagagaagtgcaaaggggccaacatcatcaaatactgtaactc
aagtttgcttatgggggtggaggtgtagctgagttgggaagggcttgctt
agcactgtacaggagcccagtgcctaatccagaagcatctgggaagcaga
gacaggatcagattgctgtcctcccccaccattttgagccaccatgtggg
ttgctgggaaatgaactcagacttctggaagagtagtcagtgctcttaat
cgctgagccatttctccagtcccttttcagtcattttaagatagtatgcc
aatgggagagaaagaacgcgaagtccatgagagcattccaaatgcactca
ggccaagcctttcctgtccatgttcaaacacaa
tttagatcagctctggagtcttagttttgttacatagcctcttattgtta
ttagaaccatacgaagccaagtgtggtggcgcacacctttaatctcggga
ggcagaggcaggcggatttctgagtttgaggccagcctggtctacaaagt
gagttgcaggacagccagggctatacagagaaaccctgtctcgagaaaca
gaaagaaaaaaaaaaagtagaagaagaagaagaagaagaagaaggaggag
gaggaggaggaggaggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_107359508_107360591
seq2: B6Ng01-013M22.b_47_1129 (reverse)

seq1  TTGTGTTTTGACACTGACAGG-AAGGCTCTGGCCTGAGTGCATTTGGAAT  49
      ||||||||  |||  |||||| |||||| |||||||||||||||||||||
seq2  TTGTGTTTGAACATGGACAGGAAAGGCT-TGGCCTGAGTGCATTTGGAAT  49

seq1  GCTCTCATGGACTCTGCGTTCTTTCTCTCACATTGCATTACTATACTTTA  99
      |||||||||||||  |||||||||||||| |||||   |||||| |||  
seq2  GCTCTCATGGACTTCGCGTTCTTTCTCTCCCATTGGCATACTAT-CTT--  96

seq1  AAAATGACTGAAAAGGGACTGGAGAGATGGCTCAGCGATTAAGAGCACTG  149
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAATGACTGAAAAGGGACTGGAGAAATGGCTCAGCGATTAAGAGCACTG  146

seq1  ACTACTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAA-CCACATGGTGG  198
      |||||||||||||| || ||||||||| |||||||||| |||||||||||
seq2  ACTACTCTTCCAGAAGT-CTGAGTTCATTTCCCAGCAACCCACATGGTGG  195

seq1  CTCAAAAT-GTGGGGGAGGACAGCAATCTGATCCTGTCTCTGCTTCCCAG  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATGGTGGGGGAGGACAGCAATCTGATCCTGTCTCTGCTTCCCAG  245

seq1  GTGCTTCTGGGATTGGGCACTGGGCT-CTGTACAGTGCTAAGCAAGCCCT  296
       ||||||| ||||| ||||||||||| |||||||||||||||||||||||
seq2  ATGCTTCT-GGATTAGGCACTGGGCTCCTGTACAGTGCTAAGCAAGCCCT  294

seq1  TCCCAACTCAGCTACACCTCCACCCCCATAAGCAAACTTGAGTTACAGTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTCAGCTACACCTCCACCCCCATAAGCAAACTTGAGTTACAGTA  344

seq1  TTTGATGATGTTGGCCCC-TTGCACTTCTCTGACATCCTGCTGGTTTTGA  395
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTGATGATGTTGGCCCCTTTGCACTTCTCTGACATCCTGCTGGTTTTGA  394

seq1  GGGGGTCTTCCGTAGCCTAGGCTGACCTGAAGTTTGCTGTGTTGTGGAGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCTTCCGTAGCCTAGGCTGACCTGAAGTTTGCTGTGTTGTGGAGC  444

seq1  CTCCCTCCCCTTTCCAGAAGCCAGGCTTCAGGTGTGCACTCCCAAGCCCG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCCTTTCCAGAAGCCAGGCTTCAGGTGTGCACTCCCAAGCCCG  494

seq1  GTTTAGCTGGTCGTTAACTAAGTCAGATGATGATGTTACGAGCTGCTTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCTGGTCGTTAACTAAGTCAGATGATGATGTTACGAGCTGCTTTC  544

seq1  TGTTAAATCCTGTTACAGGAGTCACTACTGATGGTATTGTGGTTTGGCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATCCTGTTACAGGAGTCACTACTGATGGTATTGTGGTTTGGCTT  594

seq1  TGGGAGCTGTTCACTTCTCCCACATCCTTTGTATAAACTTATGCCTGACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCTGTTCACTTCTCCCACATCCTTTGTATAAACTTATGCCTGACA  644

seq1  CCTAAGGTTTTTTTGTTTATGGGAAGTCCAGCCCAGAGCTTCGGATATGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGTTTTTTTGTTTATGGGAAGTCCAGCCCAGAGCTTCGGATATGA  694

seq1  GAGCTTGCCCATGAACTATAAACCTGGCCTTACATTTTTACTTTTTGTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGCCCATGAACTATAAACCTGGCCTTACATTTTTACTTTTTGTTT  744

seq1  TTTGACAGGGTATCACTAAGTTGCTCAGGCTAGATTTGAGCTCACTCTAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGGGTATCACTAAGTTGCTCAGGCTAGATTTGAGCTCACTCTAA  794

seq1  CCCAGTAAGCCTTGAACTTGGAATAATGCATAAACTGGCGAAGTATCTAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAAGCCTTGAACTTGGAATAATGCATAAACTGGCGAAGTATCTAG  844

seq1  GATGACAGACCTGTGTCACTTGGCATGGCCCCTCAAGTGTCACTCATATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAGACCTGTGTCACTTGGCATGGCCCCTCAAGTGTCACTCATATA  894

seq1  GGGCTCCTTCCAGGCTTCAGGTCTAGTTATGCCCATAACAGGCCAAGTTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCTTCCAGGCTTCAGGTCTAGTTATGCCCATAACAGGCCAAGTTC  944

seq1  ATTATCTCTATAGAATCTCCAGTTCCACACCCTGGTTCTAGGTAATATAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTCTATAGAATCTCCAGTTCCACACCCTGGTTCTAGGTAATATAA  994

seq1  TTACTATACTTTAAAAATGACTGAAAAGGGACTGGAGAGATGGCTCAGCG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATACTTTAAAAATGACTGAAAAGGGACTGGAGAGATGGCTCAGCG  1044

seq1  GTTAAGAGCACTGACTACTCTTCCAGAGGTCCTGAATTC  1084
      |||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGCACTGACTACTCTTCCAGAGGTCCTGAATTC  1083

seq1: chr11_107213467_107213738
seq2: B6Ng01-013M22.g_74_345

seq1  TTTAGATCAGCTCTGGAGTCTTAGTTTTGTTACATAGCCTCTTATTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATCAGCTCTGGAGTCTTAGTTTTGTTACATAGCCTCTTATTGTTA  50

seq1  TTAGAACCATACGAAGCCAAGTGTGGTGGCGCACACCTTTAATCTCGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACCATACGAAGCCAAGTGTGGTGGCGCACACCTTTAATCTCGGGA  100

seq1  GGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGT  150

seq1  GAGTTGCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAGAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAGAAACA  200

seq1  GAAAGAAAAAAAAAAAGTAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAAAAAAAAAGTAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAG  250

seq1  GAGGAGGAGGAGGAGGAGGAGG  272
      ||||||||||||||||||||||
seq2  GAGGAGGAGGAGGAGGAGGAGG  272