BAC Information

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BAC

Clone NameB6Ng01-013N11
Chromosome11 (Build37)
Map Location 77,297,762 - 77,383,667
singlet/doubletdoublet
Overlap geneAnkrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1
Upstream geneAbr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6
Downstream geneLOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013N11.bB6Ng01-013N11.g
ACCDH848553DH848554
length679758
definitionDH848553|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N11, 5' end.DH848554|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,297,762 - 77,298,440)(77,382,906 - 77,383,667)
sequence
gaattcacttctcaaaaataagacatctgggtgcatgagaggcagaccgt
ccagtggttcatggcgttgatgtcccatcgtgaggaccaacatccacgtc
aggtagctcacgaatgcctgtaagtccagctccaagacctgatgtgtctt
ctggcatcccagaatcgcagacacacacaaataaaaataaatcttttttt
aaaagtccatttcaaggccaggtgtgctggcagtggtgcactcgcacagg
cataaacataccttaaaactcggttccaaaacacaaacgggctcagagct
tgacatctctgctgtggcatgcgcttatgcatgtgtgcacacacacacat
atagatgagtgtaataacattttctcttttttgtttttttgtttctgaga
ctaggtttctctatgtagccctggctatcctagaacttgctctgtagatg
aggctggcctcgaactcacaccaccgctgcccagctaaaattatcttttt
ctttgttttttacttttttacttgtctggagatgtttttcctacatgtat
gtctgggcactgtgtgtattcttcgtgcctgtgaagacggccagaaaaag
gtactgggtccctggaactgctcatagatgtttgtgagttaccatgtagg
gtttttggtttgtttgtttttttttgggg
gaattccaggctaactaatactacaaagcatgaacccgtcttataaaaaa
aaataataataataacaattaaataagttttttgtttagatgaaatttag
gtaataactcaaaagaatttgagatgatggaggtgtaatttggttgatag
aactcatgaagtcttgggtttgataaccaggtatggcagaatatctctat
aatttcattactcaagagaatcaggaattcagggtcatcctgagctgcat
ggtgatttagaacctaaattgagctacatgagattcttataaatgaatga
atgactaaataaacagtttttgagatcaagacaagtcctgatagcacata
ttggtaccagcgtttgggtggaaggtttaggaggattttaatttggctta
tatagtgatgtgtaaatcattctgggttacatagggatatattcaattca
aaaaaatattttggatctcattatgtacacaaggcttgcctggaactcac
agaggttctcctgcctctgcctcctaagtgttgggattaaaggtatgcat
caccatgcccagcctaaagaaaaaagtgtatgtgtttatttgtttgtttg
ttttttactagaatatcagttgaaagtactggatatccagctctgtaggt
agaattttctgcctaaaaaggaaagctctgggtttgattccccagaacca
ttaaactaataatgagacagatgatcagaaattcatgtatcctagcttca
tgcaggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_77297762_77298440
seq2: B6Ng01-013N11.b_49_727

seq1  GAATTCACTTCTCAAAAATAAGACATCTGGGTGCATGAGAGGCAGACCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTCAAAAATAAGACATCTGGGTGCATGAGAGGCAGACCGT  50

seq1  CCAGTGGTTCATGGCGTTGATGTCCCATCGTGAGGACCAACATCCACGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGTTCATGGCGTTGATGTCCCATCGTGAGGACCAACATCCACGTC  100

seq1  AGGTAGCTCACGAATGCCTGTAAGTCCAGCTCCAAGACCTGATGTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCTCACGAATGCCTGTAAGTCCAGCTCCAAGACCTGATGTGTCTT  150

seq1  CTGGCATCCCAGAATCGCAGACACACACAAATAAAAATAAATCTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATCCCAGAATCGCAGACACACACAAATAAAAATAAATCTTTTTTT  200

seq1  AAAAGTCCATTTCAAGGCCAGGTGTGCTGGCAGTGGTGCACTCGCACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCATTTCAAGGCCAGGTGTGCTGGCAGTGGTGCACTCGCACAGG  250

seq1  CATAAACATACCTTAAAACTCGGTTCCAAAACACAAACGGGCTCAGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACATACCTTAAAACTCGGTTCCAAAACACAAACGGGCTCAGAGCT  300

seq1  TGACATCTCTGCTGTGGCATGCGCTTATGCATGTGTGCACACACACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCTCTGCTGTGGCATGCGCTTATGCATGTGTGCACACACACACAT  350

seq1  ATAGATGAGTGTAATAACATTTTCTCTTTTTTGTTTTTTTGTTTCTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGAGTGTAATAACATTTTCTCTTTTTTGTTTTTTTGTTTCTGAGA  400

seq1  CTAGGTTTCTCTATGTAGCCCTGGCTATCCTAGAACTTGCTCTGTAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTTCTCTATGTAGCCCTGGCTATCCTAGAACTTGCTCTGTAGATG  450

seq1  AGGCTGGCCTCGAACTCACACCACCGCTGCCCAGCTAAAATTATCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTCGAACTCACACCACCGCTGCCCAGCTAAAATTATCTTTTT  500

seq1  CTTTGTTTTTTACTTTTTTACTTGTCTGGAGATGTTTTTCCTACATGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTTTACTTTTTTACTTGTCTGGAGATGTTTTTCCTACATGTAT  550

seq1  GTCTGGGCACTGTGTGTATTCTTCGTGCCTGTGAAGACGGCCAGAAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGCACTGTGTGTATTCTTCGTGCCTGTGAAGACGGCCAGAAAAAG  600

seq1  GTACTGGGTCCCTGGAACTGCTCATAGATGTTTGTGAGTTACCATGTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGTCCCTGGAACTGCTCATAGATGTTTGTGAGTTACCATGTAGG  650

seq1  GTTTTTGGTTTGTTTGTTTTTTTTGGGGG  679
      |||||||||||||||||||||||| ||||
seq2  GTTTTTGGTTTGTTTGTTTTTTTTTGGGG  679

seq1: chr11_77382906_77383667
seq2: B6Ng01-013N11.g_66_823 (reverse)

seq1  AACCTGCTATGAAGCTAAGGATAACTTTGAATTTCTGATCATCCTGTCTC  50
      ||||||| |||||||| ||||||    ||||||||||||||| |||||||
seq2  AACCTGC-ATGAAGCT-AGGATA--CATGAATTTCTGATCAT-CTGTCTC  45

seq1  ATTATTAGTTTTATATGGTTCTGGGGAATCAAACCCAGAGCTT--CATTC  98
      |||||||||||   |||||||||||||||||||||||||||||  | || 
seq2  ATTATTAGTTT--AATGGTTCTGGGGAATCAAACCCAGAGCTTTCCTTTT  93

seq1  TAGGCAG-AAATTCTACCTACAGAGCTGAATATCCAGTAC-TTCAACTGA  146
      ||||||| |||||||||||||||||||| ||||||||||| |||||||||
seq2  TAGGCAGAAAATTCTACCTACAGAGCTGGATATCCAGTACTTTCAACTGA  143

seq1  TATTTCTAGTAAAAAACAAACAAACAAATAAACACATACACTTTTTTCTT  196
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TTCTAGTAAAAAACAAACAAACAAATAAACACATACACTTTTTTCTT  192

seq1  TAGGCTGGGCATGGTGATGCATACCTTTAATCCCAACACTTAGGAGGCAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGGGCATGGTGATGCATACCTTTAATCCCAACACTTAGGAGGCAG  242

seq1  AGGCAGGAGAACCTCTGTGAGTTCCAGGCAAGCCTTGTGTACATAATGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAGAACCTCTGTGAGTTCCAGGCAAGCCTTGTGTACATAATGAG  292

seq1  ATCCAAAATATTTTTTTGAATTGAATATATCCCTATGTAACCCAGAATGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAATATTTTTTTGAATTGAATATATCCCTATGTAACCCAGAATGA  342

seq1  TTTACACATCACTATATAAGCCAAATTAAAATCCTCCTAAACCTTCCACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACATCACTATATAAGCCAAATTAAAATCCTCCTAAACCTTCCACC  392

seq1  CAAACGCTGGTACCAATATGTGCTATCAGGACTTGTCTTGATCTCAAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGCTGGTACCAATATGTGCTATCAGGACTTGTCTTGATCTCAAAAA  442

seq1  CTGTTTATTTAGTCATTCATTCATTTATAAGAATCTCATGTAGCTCAATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATTTAGTCATTCATTCATTTATAAGAATCTCATGTAGCTCAATT  492

seq1  TAGGTTCTAAATCACCATGCAGCTCAGGATGACCCTGAATTCCTGATTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCTAAATCACCATGCAGCTCAGGATGACCCTGAATTCCTGATTCT  542

seq1  CTTGAGTAATGAAATTATAGAGATATTCTGCCATACCTGGTTATCAAACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTAATGAAATTATAGAGATATTCTGCCATACCTGGTTATCAAACC  592

seq1  CAAGACTTCATGAGTTCTATCAACCAAATTACACCTCCATCATCTCAAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTTCATGAGTTCTATCAACCAAATTACACCTCCATCATCTCAAAT  642

seq1  TCTTTTGAGTTATTACCTAAATTTCATCTAAACAAAAAACTTATTTAATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAGTTATTACCTAAATTTCATCTAAACAAAAAACTTATTTAATT  692

seq1  GTTATTATTATTATTTTTTTTTATAAGACGGGTTCATGCTTTGTAGTATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTATTATTATTTTTTTTTATAAGACGGGTTCATGCTTTGTAGTATT  742

seq1  AGTTAGCCTGGAATTC  762
      ||||||||||||||||
seq2  AGTTAGCCTGGAATTC  758