BAC Information

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BAC

Clone NameB6Ng01-013N22
Chromosome11 (Build37)
Map Location 29,243,865 - 29,356,952
singlet/doubletdoublet
Overlap geneLOC672637, LOC100042985, A430106J12Rik
Upstream geneCcdc85a, Efemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104
Downstream gene2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013N22.bB6Ng01-013N22.g
ACCDH848575DH848576
length1,069986
definitionDH848575|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N22, 5' end.DH848576|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,355,882 - 29,356,952)(29,243,865 - 29,244,856)
sequence
gaattcacaaaactgaagttttactttagactatttgtatatttctaaaa
agctaaacatagtcttatgtataatttttatgttacacactaaatgaagc
tataatagaattatttgatacaactttaaacagaaaagggccgggattca
ggtttttaaaaaacccttcttcctgaacaagtaaaattgagttttaagtt
ataaaaaagtaaaacaagacattactttgtgagataataattttggagac
aactgtttctcttgtgggatcttagctagggaaaataaagaaatataaat
aatcttaatttatttattaatctacttaaaggaaacaaaattgagactac
cttcagcaagttcactagttctggatatctgttccagctcccagccaagg
tgtaatgactcatccatactttgtttctgtgccatttccagagtcatatt
ttcttccattaattcttcaatcttctttctatccatatctcgttcctttt
caattatacagaatagggaaagaaagctaagaaatcatgtaatttccatc
cattattcatttatttttactaattttaaagtgaaagctttttagctcct
taaaattttctcactgaaggcaatacttagttattgtagtcaccagtgat
caatattgatatccttttaaaacctgatatgatatccttttaaaatgatc
tttttaaaaacttagttctttgagaatttctacaacatgttctggctgtt
ttcactcctcttttttttttttttttggtttttcgagacagggtttctct
gtgtatccctggctgtcctagaactcactttgtagaccaggctggcctct
aactcagaaatctgcctgcctcccgattgctgggaataaaggtgtgtgcc
accacgccctggctttactcctcttttactttctcctaaatcccttcctt
cttacccactggcctaagactgtggtccttttcttttcttttttaaaaac
ctatcaagttcatttgcacaatcatttcttggaaataaattatcttagcg
acaaattgaaattttcctt
gaattcaaaattttgcgtttttagaaaattgttgggtaatgctgttggta
tgtgaactatatttgagagtatctggcttagcgcaagatccaaacattat
tttgttggggaaaaatatgtacaggtgttgtggtttgagtagaaatgacc
cccatagactatatatttgaatgcttggcccatagggagtggcactacta
ggagatgtggccttgttggaggaagtgtgtcactgggtggctttgaggtc
tcagaaactcaagctgggctcaatagctcacagtccttcctagtatctga
ggatcaagatgtagaactctcagctccatctccagtactatgtgtgtcta
catgccaccatttcctgccatgaagataatggacttaccctctgaactat
aagccagccccaattaagtatttttctttataagagttgttgtattcatg
gtgtctcttcacagaaataaaatccaaagtaacatgccaggtaacttcaa
tatatatcaggacagaaaattactgccctagaactttaaaacctggtcct
tttgaatctggatacttcagagcatgagcaatttcagacagtcctgaaca
cagtcagtgaaagtcaaactctgtgacaggggaaagaacagttggcttta
actcctgaattttatcagcagaagagacacagctgacgaatgattttccc
ctctcacaaactgtctcagatcattgaagcagctcttataacacaggtat
atacatgtaaataacagtgtttgtgtggtatattgagacacaagagaagg
ctgctgatggctggtaactagcagagctgagcagctaattcttctgagga
cgagggcagtcattaccacaatatcagaatggaatcagcatactgcttta
aggaactgatgctgacaagtggcttgctgcttcattcagatggatccttc
tgtgacacaagatttcaaagacaatttctcaagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_29355882_29356952
seq2: B6Ng01-013N22.b_46_1114 (reverse)

seq1  AAGGAACATTTTCATTTTTGTCCCTAAAGATTATTTATATCCAAG-AATG  49
      |||||| ||||  |  |||||| || ||||| |||||| |||||| ||||
seq2  AAGGAAAATTTCAA--TTTGTCGCT-AAGATAATTTATTTCCAAGAAATG  47

seq1  TATGTGCAAATTGAACTTGATAGGTTTTTTAAAAAAGAAAAGAAAAAGGA  99
        |||||||| ||||||||||||| ||||||||||||||||||||| |  
seq2  ATTGTGCAAA-TGAACTTGATAGG-TTTTTAAAAAAGAAAAGAAAAGGAC  95

seq1  CACAGTCTTAGGCCAGTGGGTAAGAAGGAAGGGATTTAGGAGAAGGTAAA  149
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACAGTCTTAGGCCAGTGGGTAAGAAGGAAGGGATTTAGGAGAAAGTAAA  145

seq1  AGAGGAGTAAAGCCA-GGCGTGGTGGCACACACCTTTAATCCCAGCACTC  198
      ||||||||||||||| |||||||||||||||||||||| |||||||| ||
seq2  AGAGGAGTAAAGCCAGGGCGTGGTGGCACACACCTTTATTCCCAGCAATC  195

seq1  GGGAGGCAGGCAGATTTCTGAGTTAGAGGCCAGCCTGGTCTACAAAGTGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGGCAGATTTCTGAGTTAGAGGCCAGCCTGGTCTACAAAGTGA  245

seq1  GTTCTAGGACAGCCAGGGATACACAGAGAAACCCTGTCTCGAAAAACC-A  297
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTTCTAGGACAGCCAGGGATACACAGAGAAACCCTGTCTCGAAAAACCAA  295

seq1  AAAAAAAAAAAAAAGAGGAGTGAAAACAGCCAGAACATGTTGTAGAAATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAGAGGAGTGAAAACAGCCAGAACATGTTGTAGAAATT  345

seq1  CTCAAAGAACTAAGTTTTTAAAAAGATCATTTTAAAAGGATATCATATCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAACTAAGTTTTTAAAAAGATCATTTTAAAAGGATATCATATCA  395

seq1  GGTTTTAAAAGGATATCAATATTGATCACTGGTGACTACAATAACTAAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTAAAAGGATATCAATATTGATCACTGGTGACTACAATAACTAAGT  445

seq1  ATTGCCTTCAGTGAGAAAATTTTAAGGAGCTAAAAAGCTTTCACTTTAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTTCAGTGAGAAAATTTTAAGGAGCTAAAAAGCTTTCACTTTAAA  495

seq1  ATTAGTAAAAATAAATGAATAATGGATGGAAATTACATGATTTCTTAGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAAAAATAAATGAATAATGGATGGAAATTACATGATTTCTTAGCT  545

seq1  TTCTTTCCCTATTCTGTATAATTGAAAAGGAACGAGATATGGATAGAAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCCTATTCTGTATAATTGAAAAGGAACGAGATATGGATAGAAAG  595

seq1  AAGATTGAAGAATTAATGGAAGAAAATATGACTCTGGAAATGGCACAGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGAAGAATTAATGGAAGAAAATATGACTCTGGAAATGGCACAGAA  645

seq1  ACAAAGTATGGATGAGTCATTACACCTTGGCTGGGAGCTGGAACAGATAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTATGGATGAGTCATTACACCTTGGCTGGGAGCTGGAACAGATAT  695

seq1  CCAGAACTAGTGAACTTGCTGAAGGTAGTCTCAATTTTGTTTCCTTTAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACTAGTGAACTTGCTGAAGGTAGTCTCAATTTTGTTTCCTTTAAG  745

seq1  TAGATTAATAAATAAATTAAGATTATTTATATTTCTTTATTTTCCCTAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAATAAATAAATTAAGATTATTTATATTTCTTTATTTTCCCTAGC  795

seq1  TAAGATCCCACAAGAGAAACAGTTGTCTCCAAAATTATTATCTCACAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCCCACAAGAGAAACAGTTGTCTCCAAAATTATTATCTCACAAAG  845

seq1  TAATGTCTTGTTTTACTTTTTTATAACTTAAAACTCAATTTTACTTGTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCTTGTTTTACTTTTTTATAACTTAAAACTCAATTTTACTTGTTC  895

seq1  AGGAAGAAGGGTTTTTTAAAAACCTGAATCCCGGCCCTTTTCTGTTTAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAGGGTTTTTTAAAAACCTGAATCCCGGCCCTTTTCTGTTTAAA  945

seq1  GTTGTATCAAATAATTCTATTATAGCTTCATTTAGTGTGTAACATAAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATCAAATAATTCTATTATAGCTTCATTTAGTGTGTAACATAAAAA  995

seq1  TTATACATAAGACTATGTTTAGCTTTTTAGAAATATACAAATAGTCTAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACATAAGACTATGTTTAGCTTTTTAGAAATATACAAATAGTCTAAA  1045

seq1  GTAAAACTTCAGTTTTGTGAATTC  1071
      ||||||||||||||||||||||||
seq2  GTAAAACTTCAGTTTTGTGAATTC  1069

seq1: chr11_29243865_29244856
seq2: B6Ng01-013N22.g_65_1050

seq1  GAATTCAAAATTTTGCGTTTTTAGAAAATTGTTGGGTAATGCTGTTGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATTTTGCGTTTTTAGAAAATTGTTGGGTAATGCTGTTGGTA  50

seq1  TGTGAACTATATTTGAGAGTATCTGGCTTAGCGCAAGATCCAAACATTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACTATATTTGAGAGTATCTGGCTTAGCGCAAGATCCAAACATTAT  100

seq1  TTTGTTGGGGAAAAATATGTACAGGTGTTGTGGTTTGAGTAGAAATGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGGGGAAAAATATGTACAGGTGTTGTGGTTTGAGTAGAAATGACC  150

seq1  CCCATAGACTATATATTTGAATGCTTGGCCCATAGGGAGTGGCACTACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGACTATATATTTGAATGCTTGGCCCATAGGGAGTGGCACTACTA  200

seq1  GGAGATGTGGCCTTGTTGGAGGAAGTGTGTCACTGGGTGGCTTTGAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGTGGCCTTGTTGGAGGAAGTGTGTCACTGGGTGGCTTTGAGGTC  250

seq1  TCAGAAACTCAAGCTGGGCTCAATAGCTCACAGTCCTTCCTAGTATCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACTCAAGCTGGGCTCAATAGCTCACAGTCCTTCCTAGTATCTGA  300

seq1  GGATCAAGATGTAGAACTCTCAGCTCCATCTCCAGTACTATGTGTGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAGATGTAGAACTCTCAGCTCCATCTCCAGTACTATGTGTGTCTA  350

seq1  CATGCCACCATTTCCTGCCATGAAGATAATGGACTTACCCTCTGAACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACCATTTCCTGCCATGAAGATAATGGACTTACCCTCTGAACTAT  400

seq1  AAGCCAGCCCCAATTAAGTATTTTTCTTTATAAGAGTTGTTGTATTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCCCCAATTAAGTATTTTTCTTTATAAGAGTTGTTGTATTCATG  450

seq1  GTGTCTCTTCACAGAAATAAAATCCAAAGTAACATGCCAGGTAACTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTTCACAGAAATAAAATCCAAAGTAACATGCCAGGTAACTTCAA  500

seq1  TATATATCAGGACAGAAAATTACTGCCCTAGAACTTTAAAACCTGGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATCAGGACAGAAAATTACTGCCCTAGAACTTTAAAACCTGGTCCT  550

seq1  TTTGAATCTGGATACTTCAGAGCATGAGCAATTTCAGACAGTCCTGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATCTGGATACTTCAGAGCATGAGCAATTTCAGACAGTCCTGAACA  600

seq1  CAGTCAGTGAAAGTCAAACTCTGTGACAGGGGAAAGAACAGTTGGCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTGAAAGTCAAACTCTGTGACAGGGGAAAGAACAGTTGGCTTTA  650

seq1  ACTCCTGAATTTTATCAGCAGAAGAGACACAGCTGACGAATGATTTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGAATTTTATCAGCAGAAGAGACACAGCTGACGAATGATTTTCCC  700

seq1  CTCTCACAAACTGTCTCAGATCATTGAAGCAGCTCTTATAACACAGGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACAAACTGTCTCAGATCATTGAAGCAGCTCTTATAACACAGGTAT  750

seq1  ATACATGTAAATAACAGTGTTTGTGTGGTATATTGAGACACAAGGAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATACATGTAAATAACAGTGTTTGTGTGGTATATTGAGACACAA-GAGAAG  799

seq1  GCTGCTGATGGCTGGTAACTAGCAGAGCTGAGCAGCTAATTCTTCTGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGATGGCTGGTAACTAGCAGAGCTGAGCAGCTAATTCTTCTGAGG  849

seq1  ACAGAGGGCAGTCAATACCACAATATCAAGAAT-GAATCAAGCATACTGC  899
      || ||||||||||| |||||||||||| ||||| ||||| ||||||||||
seq2  AC-GAGGGCAGTCATTACCACAATATC-AGAATGGAATC-AGCATACTGC  896

seq1  TTTAAGGAACTGATGCTGACAAAGTGCTTGTCTGCTTCATTCAGATGGAG  949
      ||||||||||||||||||||||   ||||| |||||||||||||||||| 
seq2  TTTAAGGAACTGATGCTGACAAGTGGCTTG-CTGCTTCATTCAGATGGAT  945

seq1  CCTTCTGTGACACAAGATTTTCAAAGACAATATCTCAAAGAAG  992
      ||||||||||||||||| ||||||||||||| |||| ||||||
seq2  CCTTCTGTGACACAAGA-TTTCAAAGACAATTTCTC-AAGAAG  986