BAC Information

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BAC

Clone NameB6Ng01-015A20
Chromosome11 (Build37)
Map Location 100,554,250 - 100,710,090
singlet/doubletdoublet
Overlap geneD11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b
Upstream geneLOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik
Downstream geneStat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015A20.bB6Ng01-015A20.g
ACCDH849419DH849420
length1,010993
definitionDH849419|Mus musculus domesticus DNA, BAC clone: B6Ng01-015A20, 5' end.DH849420|Mus musculus domesticus DNA, BAC clone: B6Ng01-015A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,554,250 - 100,555,272)(100,709,100 - 100,710,090)
sequence
gaattcaactagcaccagtttttcttcagcttcctaagtgccaggagcac
tggcaacgaacctacacttgactctcggagggttagaaaacctgagtcct
cctgaccttatacaattctatctgacagcctggtccagatgttcacaagc
ctggctccgccagaagaccccccaccccccagcccaaagcagcaacaaga
acagatttgcctgagtctccctcccctcagtctgagggtctcacaaaatt
gaagatgggtggagacacccttaccccaccccctccctaactcctgccta
aaggtcagcaatataaagacccagtgattagagagacattaggcatccat
ctttttcctctctcctggcaacacagggccctcctccaaaccccaaaccc
ccctggcaggtccctcagctgtcactgtttagcactggaatgacaggcgt
ccagactccgtgagtccagccacattcaaggccactgagcttagcactct
gcccccgccccctcctccatcagtcgctaattttattgacctgtaaaagg
cacgttcctggctggtggttggggggggatgactcctgaagggaccaagg
acactctgagaaagagttaccctagttaagatggctgcccaaaagagtgg
ctgtgaatttttagctttagccagaaaagactgggagaagagagaatcaa
ttcttttctatgcactttgaggcagggcaagaatgaagcagaagagatac
aggttggattacagaagaactgtcatccttctgtggaatctgcctaaccc
ttccatccctccccccccaaaggtgggcttgtgcctgctgggcctcttac
tacagaaatagccctttcctgaagaatcaacctagatcttgctctattaa
atcaaacaaaaaaaataggccttcttgaattctccctgctccatgcttac
ttgactcagtctcatactggctctcgatgctatttctcagtgaagaaggg
ggaacaaggg
gaattctgttggttggcctctgagtggtttgttatgtgttttcttggtag
caatctccattttatgaaggaatatagttgttaaaattgatagagctaaa
cgggaaggggcttctggttttaagagtccagttagaacacctgcataccc
ctggccaggtgtcaccagaggatgacgtgttttctgtaggctttggagaa
cgggaaattcaaacaaagttgtacacttcaagagagtggaaaagtctctc
tgtctcttcttcccccctccctccctcccttcccacccccacccctcttc
tcacatctgagagaagacaaacaaaacaaaacaaaacaaaaacaaaaacc
aagagttgatttctgtcactagcagtttggtgattgcataactcagagtt
caatttctctaaaaaatctttgctgcagacccagcaacctccctgatttt
taccttctctgttttcttgtttctgccaagaagccattgatatacgtatg
ttgggctgagtttaaggaggatatgcttccgtgtatgctttgtgatgtgt
gtaagggggcgggaggacaaatactatcagtgcttgggggattgcaacag
aaatattttggccaacacttcctattgactctgacttctcatttcacctc
cattttcttagtctcgattgatttctcttcctcctcctcctcctcttctt
cctcttcttcctcttcctcctccttcttatacacaaggatcccattggga
tcaaaagcatcatttactgctttttggtatatgttttatttttttttcgt
cccaatgatattacagtcagtctgtatcaggcttatataggtgaaaatac
ttgctgtggttcctctggtttgttacgtaggcaagggatacgtgttgtct
tatagtaaagaaaggatcttataaagaggaaaataacatccttaaatctt
gtgttagttgaaagtgggctcatggaagccttattgttctaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_100554250_100555272
seq2: B6Ng01-015A20.b_41_1050

seq1  GAATTCAACTAGCACCAGTTTTTCTTCAGCTTCCTAAGTGCCAGGAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTAGCACCAGTTTTTCTTCAGCTTCCTAAGTGCCAGGAGCAC  50

seq1  TGGCAACGAACCTACACTTGACTCTCGGAGGGTTAGAAAACCTGAGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACGAACCTACACTTGACTCTCGGAGGGTTAGAAAACCTGAGTCCT  100

seq1  CCTGACCTTATACAATTCTATCTGACAGCCTGGTCCAGATGTTCACAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCTTATACAATTCTATCTGACAGCCTGGTCCAGATGTTCACAAGC  150

seq1  CTGGCTCCGCCAGAAGACCCCCCACCCCCCAGCCCAAAGCAGCAACAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCGCCAGAAGACCCCCCACCCCCCAGCCCAAAGCAGCAACAAGA  200

seq1  ACAGATTTGCCTGAGTCTCCCTCCCCTCAGTCTGAGGGTCTCACAAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTGCCTGAGTCTCCCTCCCCTCAGTCTGAGGGTCTCACAAAATT  250

seq1  GAAGATGGGTGGAGACACCCTTACCCCACCCCCTCCCTAACTCCTGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGGTGGAGACACCCTTACCCCACCCCCTCCCTAACTCCTGCCTA  300

seq1  AAGGTCAGCAATATAAAGACCCAGTGATTAGAGAGACATTAGGCATCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGCAATATAAAGACCCAGTGATTAGAGAGACATTAGGCATCCAT  350

seq1  CTTTTTCCTCTCTCCTGGCAACACAGGGCCCTCCTCCAAACCCCAAACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCTCTCTCCTGGCAACACAGGGCCCTCCTCCAAACCCCAAACCC  400

seq1  CCCTGGCAGGTCCCTCAGCTGTCACTGTTTAGCACTGGAATGACAGGCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCAGGTCCCTCAGCTGTCACTGTTTAGCACTGGAATGACAGGCGT  450

seq1  CCAGACTCCGTGAGTCCAGCCACATTCAAGGCCACTGAGCTTAGCACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTCCGTGAGTCCAGCCACATTCAAGGCCACTGAGCTTAGCACTCT  500

seq1  GCCCCCGCCCCCTCCTCCATCAGTCGCTAATTTTATTGACCTGTAAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCGCCCCCTCCTCCATCAGTCGCTAATTTTATTGACCTGTAAAAGG  550

seq1  CACGTTCCTGGCTGGTGGTTGGGGGGGGATGACTCCTGAAGGGACCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTCCTGGCTGGTGGTTGGGGGGGGATGACTCCTGAAGGGACCAAGG  600

seq1  ACACTCTGAGAAAGAGTTACCCTAGTTAAGATGGCTGCCCAAAAGAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTGAGAAAGAGTTACCCTAGTTAAGATGGCTGCCCAAAAGAGTGG  650

seq1  CTGTGAATTTTTAGCTTTAGCCAGAAAAGACTGGGAGAAGAGAGAATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATTTTTAGCTTTAGCCAGAAAAGACTGGGAGAAGAGAGAATCAA  700

seq1  TTCTTTTCTATGCACTTTGAGGCAGGGCAAGAATGAAGCAGAAGAGATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTATGCACTTTGAGGCAGGGCAAGAATGAAGCAGAAGAGATAC  750

seq1  AGGTTGGATAACAGGAAGAACTGTCATCCTTCTGTGGAATCTGCCCTAAC  800
      ||||||||| ||| ||||||||||||||||||||||||||||| ||||||
seq2  AGGTTGGATTACA-GAAGAACTGTCATCCTTCTGTGGAATCTG-CCTAAC  798

seq1  CCTTCCATCCCTCCCCCCCCCCAAAGGT-GGCTTGTGCCTGCTGGGCCTC  849
      ||||||||||||  |||||||||||||| |||||||||||||||||||||
seq2  CCTTCCATCCCT--CCCCCCCCAAAGGTGGGCTTGTGCCTGCTGGGCCTC  846

seq1  TTACTACAGAAATAGCCCTTTCCCTGAAGAATCAACCTAGATCTTGCCTC  899
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  TTACTACAGAAATAGCCCTTT-CCTGAAGAATCAACCTAGATCTTG-CTC  894

seq1  TATTAAAATCAGAACAAAAAAAAATTAGGCC-TCTCTGATTCTCCCTGCT  948
      |||| |||||| |||||||||||  |||||| |||   ||||||||||||
seq2  TATT-AAATCA-AACAAAAAAAA--TAGGCCTTCTTGAATTCTCCCTGCT  940

seq1  CCATGCCTACCTGACTCCAGCCCTCCAATACTGGCTCTCGGATGCTTTTT  998
      |||||| ||| ||||| |||   ||  |||||||||||| |||||| |||
seq2  CCATGCTTACTTGACT-CAG---TCTCATACTGGCTCTC-GATGCTATTT  985

seq1  CTCAAGTG-AGAAGGGGGGACAAGGG  1023
      ||| |||| ||||||||| |||||||
seq2  CTC-AGTGAAGAAGGGGGAACAAGGG  1010

seq1: chr11_100709100_100710090
seq2: B6Ng01-015A20.g_69_1061 (reverse)

seq1  GTTAGAACAATGAGGCTTCCATTGAGCCCACTTTCAACTAACACCAGATT  50
      ||||||||||| ||||||||| |||||||||||||||||||||| |||||
seq2  GTTAGAACAATAAGGCTTCCA-TGAGCCCACTTTCAACTAACACAAGATT  49

seq1  TAAGGATGTTATTTTCCTCTTTAT-AGATCCTTTCTTTACTATAAGGACA  99
      |||||||||||||||||||||||| |||||||||||||||||||||   |
seq2  TAAGGATGTTATTTTCCTCTTTATAAGATCCTTTCTTTACTATAAGACAA  99

seq1  CACGTATCCCTTGCCTACGTAACAAACCAGAGGAACCACAGCAAGTATAT  149
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CACGTATCCCTTGCCTACGTAACAAACCAGAGGAACCACAGCAAGTATTT  149

seq1  TCACCTATATAAGCCTGATACAGACTGACTGTAATATCATTGGGACG--A  197
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  TCACCTATATAAGCCTGATACAGACTGACTGTAATATCATTGGGACGAAA  199

seq1  AAAAAATTAAACATATACCAAAAAGCAGTAAATGATGCTTTTGATCCCAA  247
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAACATATACCAAAAAGCAGTAAATGATGCTTTTGATCCCAA  249

seq1  TGGGATCCTTGTGTATAAGAAGGAGGAGGAAGAGGAAGAAGAGGAAGAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCCTTGTGTATAAGAAGGAGGAGGAAGAGGAAGAAGAGGAAGAAG  299

seq1  AGGAGGAGGAGGAGGAAGAGAAATCAATCGAGACTAAGAAAATGGAGGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGGAGGAGGAAGAGAAATCAATCGAGACTAAGAAAATGGAGGTG  349

seq1  AAATGAGAAGTCAGAGTCAATAGGAAGTGTTGGCCAAAATATTTCTGTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAAGTCAGAGTCAATAGGAAGTGTTGGCCAAAATATTTCTGTTG  399

seq1  CAATCCCCCAAGCACTGATAGTATTTGTCCTCCCGCCCCCTTACACACAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCCCAAGCACTGATAGTATTTGTCCTCCCGCCCCCTTACACACAT  449

seq1  CACAAAGCATACACGGAAGCATATCCTCCTTAAACTCAGCCCAACATACG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCATACACGGAAGCATATCCTCCTTAAACTCAGCCCAACATACG  499

seq1  TATATCAATGGCTTCTTGGCAGAAACAAGAAAACAGAGAAGGTAAAAATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAATGGCTTCTTGGCAGAAACAAGAAAACAGAGAAGGTAAAAATC  549

seq1  AGGGAGGTTGCTGGGTCTGCAGCAAAGATTTTTTAGAGAAATTGAACTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTTGCTGGGTCTGCAGCAAAGATTTTTTAGAGAAATTGAACTCT  599

seq1  GAGTTATGCAATCACCAAACTGCTAGTGACAGAAATCAACTCTTGGTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATGCAATCACCAAACTGCTAGTGACAGAAATCAACTCTTGGTTTT  649

seq1  TGTTTTTGTTTTGTTTTGTTTTGTTTGTCTTCTCTCAGATGTGAGAAGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTTGTTTTGTTTTGTTTGTCTTCTCTCAGATGTGAGAAGAG  699

seq1  GGGTGGGGGTGGGAAGGGAGGGAGGGAGGGGGGAAGAAGAGACAGAGAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGGTGGGAAGGGAGGGAGGGAGGGGGGAAGAAGAGACAGAGAGA  749

seq1  CTTTTCCACTCTCTTGAAGTGTACAACTTTGTTTGAATTTCCCGTTCTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCACTCTCTTGAAGTGTACAACTTTGTTTGAATTTCCCGTTCTCC  799

seq1  AAAGCCTACAGAAAACACGTCATCCTCTGGTGACACCTGGCCAGGGGTAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTACAGAAAACACGTCATCCTCTGGTGACACCTGGCCAGGGGTAT  849

seq1  GCAGGTGTTCTAACTGGACTCTTAAAACCAGAAGCCCCTTCCCGTTTAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTTCTAACTGGACTCTTAAAACCAGAAGCCCCTTCCCGTTTAGC  899

seq1  TCTATCAATTTTAACAACTATATTCCTTCATAAAATGGAGATTGCTACCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAATTTTAACAACTATATTCCTTCATAAAATGGAGATTGCTACCA  949

seq1  AGAAAACACATAACAAACCACTCAGAGGCCAACCAACAGAATTC  991
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACACATAACAAACCACTCAGAGGCCAACCAACAGAATTC  993