BAC Information

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BAC

Clone NameB6Ng01-015D06
Chromosome11 (Build37)
Map Location 70,097,604 - 70,260,771
singlet/doubletdoublet
Overlap geneAlox12e, Alox15, LOC668466, Pelp1, Arrb2
Upstream geneCntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12
Downstream geneMed11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015D06.bB6Ng01-015D06.g
ACCDH849526DH849527
length1,065718
definitionDH849526|Mus musculus domesticus DNA, BAC clone: B6Ng01-015D06, 5' end.DH849527|Mus musculus domesticus DNA, BAC clone: B6Ng01-015D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,097,604 - 70,098,663)(70,259,690 - 70,260,771)
sequence
gaattccaatctctttaccagaactcccgccttccacttcctgccctttt
tttctaacaggccctcagcttttgattgacaggtgatgcttttacacagt
gcacaagaaattatccctacagaggaaatgcctgcatcacattggcctgt
aggtacccttatgtgacattttcttgattgttgatggatgtgggaggact
cacagagggcccgccccactgtggataattctacccctgggcaggtggtc
caggaaggtatgagaaaggtggttttggcttcacgcatcacctttggcag
caccttgagcctggcttaccggctgggctcttccaggttcttcggagtct
cacttcctctgccccacccgcctcaggatgaggattaagttggtcagaat
caatccacatctattcacctttaaatctccgcattccctttttattttta
agacttacttatttatatatcttatgtatatgagtgctctatctgcatgt
caaagagggcatcagatcccatgagccaccatttgagtgctgggaattga
actcaggacctctggaagagcagccggggctctgaactgctgagccacct
ctccagcccaaatatctgtgtttctatttttgtagaactagaataaagcc
caagaaacctcagcaacagaacaaaggaagagcccattaccaggacctgt
aggtaaatgcacggtacagtatgtgcaaatctgtgcatggctggtgactc
acataagaatacaaagtagaatgagatactgttttcacagagtctatgat
tatctggcagtttgtaagaaagctatttagtcacttcgggcgatgacaga
ggaaaacaggtgttcttcttttgctcacagccctgagggcaaattgattt
tacctttccaggggagtggtgcccaatttttctcctgtgtagcagaattc
ttaacatcttgcacaacttttgactttgagaagtttattttcagaaacag
tgaaggctatgcacacaaatttagtgactccctcacttgaatgtttttta
tagcatgaaatttta
gaattccacaccccagctgcgttggggtgaagactaaaacacaaagactc
tgtttttctcaatgaatgtttaaatttattttctcatggaactgttaggc
acaggcagttagttccaagtactccataggtcaaggcttgggctgtggtt
gccctttaaggtcttgcctgggtgagcctgtagtcctggatgccagccct
ccttggactcattagagacacagtcttagcactggccccacaccaactga
acccccactgtgtttaaagatccccaggtggcttgtatggacagtagagt
gtgagaaaccctgctgggggcgctgtgtgcacaccctgagaccctgagtt
tcccctgctctgggctagggctgcagggaaagaggaagaggaaatgcagt
ggatggggaactatgtgaggggtctggctgggaagtgactcatttgagtg
atcgaaggaaacttagccatatgctcttccccacctctggaaaacgcagg
cctttcctaagtggccagctatcacatcacctcagaatagatcttagggt
tatctagggattcacaaagctgaactctcacttaggaagatggaataaag
acacgttggtctgcagaagccatcagatttccccagtaagaggcccaggc
ccaggtcatccatgaaaggtgacagggaaccccagtgcagttaggaagat
tctgaaatttatcttcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_70097604_70098663
seq2: B6Ng01-015D06.b_49_1113

seq1  GAATTCCAATCTCTTTACCAGAACTCCCGCCTTCCACTTCCTGCCCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCTCTTTACCAGAACTCCCGCCTTCCACTTCCTGCCCTTTT  50

seq1  TTTCTAACAGGCCCTCAGCTTTTGATTGACAGGTGATGCTTTTACACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACAGGCCCTCAGCTTTTGATTGACAGGTGATGCTTTTACACAGT  100

seq1  GCACAAGAAATTATCCCTACAGAGGAAATGCCTGCATCACATTGGCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGAAATTATCCCTACAGAGGAAATGCCTGCATCACATTGGCCTGT  150

seq1  AGGTACCCTTATGTGACATTTTCTTGATTGTTGATGGATGTGGGAGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCCTTATGTGACATTTTCTTGATTGTTGATGGATGTGGGAGGACT  200

seq1  CACAGAGGGCCCGCCCCACTGTGGATAATTCTACCCCTGGGCAGGTGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGGCCCGCCCCACTGTGGATAATTCTACCCCTGGGCAGGTGGTC  250

seq1  CAGGAAGGTATGAGAAAGGTGGTTTTGGCTTCACGCATCACCTTTGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGTATGAGAAAGGTGGTTTTGGCTTCACGCATCACCTTTGGCAG  300

seq1  CACCTTGAGCCTGGCTTACCGGCTGGGCTCTTCCAGGTTCTTCGGAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGAGCCTGGCTTACCGGCTGGGCTCTTCCAGGTTCTTCGGAGTCT  350

seq1  CACTTCCTCTGCCCCACCCGCCTCAGGATGAGGATTAAGTTGGTCAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTCTGCCCCACCCGCCTCAGGATGAGGATTAAGTTGGTCAGAAT  400

seq1  CAATCCACATCTATTCACCTTTAAATCTCCGCATTCCCTTTTTATTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCACATCTATTCACCTTTAAATCTCCGCATTCCCTTTTTATTTTTA  450

seq1  AGACTTACTTATTTATATATCTTATGTATATGAGTGCTCTATCTGCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTACTTATTTATATATCTTATGTATATGAGTGCTCTATCTGCATGT  500

seq1  CAAAGAGGGCATCAGATCCCATGAGCCACCATTTGAGTGCTGGGAATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGGGCATCAGATCCCATGAGCCACCATTTGAGTGCTGGGAATTGA  550

seq1  ACTCAGGACCTCTGGAAGAGCAGCCGGGGCTCTGAACTGCTGAGCCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGACCTCTGGAAGAGCAGCCGGGGCTCTGAACTGCTGAGCCACCT  600

seq1  CTCCAGCCCAAATATCTGTGTTTCTATTTTTGTAGAACTAGAATAAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCCAAATATCTGTGTTTCTATTTTTGTAGAACTAGAATAAAGCC  650

seq1  CAAGAAACCTCAGCAACAGAACAAAGGAAGAGCCCATTACCAGGACCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAACCTCAGCAACAGAACAAAGGAAGAGCCCATTACCAGGACCTGT  700

seq1  AGGTAAATGCACGGTACAGTATGTGCAAATCTGTGCATGGCTGGTGACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAATGCACGGTACAGTATGTGCAAATCTGTGCATGGCTGGTGACTC  750

seq1  ACATAAGAAATACAAAGTAGAATGAGATACTG-TTTCACAGAGTCTATGA  799
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  ACATAAG-AATACAAAGTAGAATGAGATACTGTTTTCACAGAGTCTATGA  799

seq1  TTATCTGGCAGTTTGTAAGAAAGCTA-TTAGTCACTTCGGGCGATGACAG  848
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTATCTGGCAGTTTGTAAGAAAGCTATTTAGTCACTTCGGGCGATGACAG  849

seq1  AGG-AAACAGGTGTTC-TCTTATGCTCACAG-CCTGAGGGCAAATTGATT  895
      ||| |||||||||||| |||| ||||||||| ||||||||||||||||||
seq2  AGGAAAACAGGTGTTCTTCTTTTGCTCACAGCCCTGAGGGCAAATTGATT  899

seq1  TTACCTTTCCAGGGGAGTGGTG-CCAATTTTTCT-CTGTGTAGCAGAATT  943
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  TTACCTTTCCAGGGGAGTGGTGCCCAATTTTTCTCCTGTGTAGCAGAATT  949

seq1  CTTAACATCTTGCACAACTTTTGACCTTTGAG-AGTTTATTTTCAGGAAA  992
      |||||||||||||||||||||||| ||||||| |||||||||||| ||||
seq2  CTTAACATCTTGCACAACTTTTGA-CTTTGAGAAGTTTATTTTCA-GAAA  997

seq1  CAGTG-AGGCTATGCACACAAATTTAGTGACATCCTCACTTTGATGTTAT  1041
      ||||| |||||||||||||||||||||||||  ||||||||  ||||| |
seq2  CAGTGAAGGCTATGCACACAAATTTAGTGACTCCCTCACTTGAATGTTTT  1047

seq1  TTATAGCATTGAAATTTTA  1060
      |||||||| ||||||||||
seq2  TTATAGCA-TGAAATTTTA  1065

seq1: chr11_70259690_70260771
seq2: B6Ng01-015D06.g_72_789 (reverse)

seq1  TTGAAGATAAATGTATAGATACAGGCCACAGTCTGGACAAACCTACCAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGGTGAAGGTTGAGTCTCTTTGTCCTTCCTGGTCATCACAAAATGCTATT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CACCCTGCCCCCAGCCCGTTCCCCAGAGGACTGTATCAGTTGGGCTCAGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCAATGTCGGCTATTGAATTATGCCTCTGTTAAGGTTCAGAGAGGATCTG  200
                                                        
seq2  --------------------------------------------------  0

seq1  TGGTCTTTCCCAATCACGTCTTTTTATACAGCTTTGTTTTCCCTGCTTAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  TGGTCATTCGAAATATGCTTATTCTCCAATTTATCACAAATTCACCCTAT  300
                                                        
seq2  --------------------------------------------------  0

seq1  ACTCTCTTCCATGAGTCTACATTCCAGTTCTTTCTAAACAAAAGGCATCC  350
                                                        
seq2  --------------------------------------------------  0

seq1  ATCCCTTTCACGTCCTTGAAGATATATTTCAGAATCTTCCT-ACTGCACT  399
                     ||||||||| |||||||||||||||| ||||||||
seq2  ---------------TTGAAGATAAATTTCAGAATCTTCCTAACTGCACT  35

seq1  GGGGTTCCCTGTCACCTTTCATGGATGACCTGGGCCTGGGCCTCTTACTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCCCTGTCACCTTTCATGGATGACCTGGGCCTGGGCCTCTTACTG  85

seq1  GGGAAATCTGATGGCTTCTGCAGACCAACGTGTCTTTATTCCATCTTCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATCTGATGGCTTCTGCAGACCAACGTGTCTTTATTCCATCTTCCT  135

seq1  AAGTGAGAGTTCAGCTTTGTGAATCCCTAGATAACCCTAAGATCTATTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGAGTTCAGCTTTGTGAATCCCTAGATAACCCTAAGATCTATTCT  185

seq1  GAGGTGATGTGATAGCTGGCCACTTAGGAAAGGCCTGCGTTTTCCAGAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGATGTGATAGCTGGCCACTTAGGAAAGGCCTGCGTTTTCCAGAGG  235

seq1  TGGGGAAGAGCATATGGCTAAGTTTCCTTCGATCACTCAAATGAGTCACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGAGCATATGGCTAAGTTTCCTTCGATCACTCAAATGAGTCACT  285

seq1  TCCCAGCCAGACCCCTCACATAGTTCCCCATCCACTGCATTTCCTCTTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCCAGACCCCTCACATAGTTCCCCATCCACTGCATTTCCTCTTCC  335

seq1  TCTTTCCCTGCAGCCCTAGCCCAGAGCAGGGGAAACTCAGGGTCTCAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCTGCAGCCCTAGCCCAGAGCAGGGGAAACTCAGGGTCTCAGGG  385

seq1  TGTGCACACAGCGCCCCCAGCAGGGTTTCTCACACTCTACTGTCCATACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACACAGCGCCCCCAGCAGGGTTTCTCACACTCTACTGTCCATACA  435

seq1  AGCCACCTGGGGATCTTTAAACACAGTGGGGGTTCAGTTGGTGTGGGGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCTGGGGATCTTTAAACACAGTGGGGGTTCAGTTGGTGTGGGGCC  485

seq1  AGTGCTAAGACTGTGTCTCTAATGAGTCCAAGGAGGGCTGGCATCCAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAAGACTGTGTCTCTAATGAGTCCAAGGAGGGCTGGCATCCAGGA  535

seq1  CTACAGGCTCACCCAGGCAAGACCTTAAAGGGCAACCACAGCCCAAGCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGCTCACCCAGGCAAGACCTTAAAGGGCAACCACAGCCCAAGCCT  585

seq1  TGACCTATGGAGTACTTGGAACTAACTGCCTGTGCCTAACAGTTCCATGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTATGGAGTACTTGGAACTAACTGCCTGTGCCTAACAGTTCCATGA  635

seq1  GAAAATAAATTTAAACATTCATTGAGAAAAACAGAGTCTTTGTGTTTTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAATTTAAACATTCATTGAGAAAAACAGAGTCTTTGTGTTTTAG  685

seq1  TCTTCACCCCAACGCAGCTGGGGTGTGGAATTC  1082
      |||||||||||||||||||||||||||||||||
seq2  TCTTCACCCCAACGCAGCTGGGGTGTGGAATTC  718