BAC Information

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BAC

Clone NameB6Ng01-015H18
Chromosome11 (Build37)
Map Location 53,393,010 - 53,529,839
singlet/doubletdoublet
Overlap geneKif3a, Il4, Il13, LOC667731, Rad50
Upstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl
Downstream geneIl5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015H18.bB6Ng01-015H18.g
ACCDH849730DH849731
length9201,016
definitionDH849730|Mus musculus domesticus DNA, BAC clone: B6Ng01-015H18, 5' end.DH849731|Mus musculus domesticus DNA, BAC clone: B6Ng01-015H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,528,913 - 53,529,839)(53,393,010 - 53,394,024)
sequence
gaattcctgatccctctgcctcagcctgccgagtgttaaacgaaatgtgt
gtgctgcctggtgggctcaatattggttttctttcaatttttaaaaatta
ttaagaaatacactgtaacatgagatgtttcatttcagcaactatgtgtt
gggtccagtagcatcatatgcaaaaataaattgtaggctgttcactttgc
aaaatagaagaaactccgtaactactgtcagaggtcccccgcagccccat
cagccctgtcttcggaacccttgggtttcactacagccacactgttgtct
tttataacaggattattgtgcttggacttcggagttcatggtgttctagc
atgtgtgagaattttcttccctgctgaacaatactcagtcttacatacag
atcctgttttgtttgtccatttttctgctgatggatgcttaggtttcttc
cttctttcaacttctatggataatgttgtgtctgggcatgtgtgtacaat
gattttcttttctttttaggtctagggtcttgtatcaactcactatgtag
ctgatgatgtccctgacctgctggtcctcctgcctccatctctcaagtgc
cggggttacaggtgtgcaccactataccaggttcctcccctgctctctcc
tctccttccttttgagatggagactctgacaatgtcacccaagctggcta
ctctcaatcttccagctttagcagctcaagtattggaagtacaggtgaca
gctgtgcacctcacagctcagaatcgtatttctcataaagctaggtcact
aacgtttcctctatgagtttatctcctcaacctgatgcagctttcttaca
gtaggaatatatttattaccgtgtgtgtccatgcacgtgtatgtgtgtgg
agaggtgtgtgaggtagtgt
gaattctttccttggactgtcctgtattttctttgtggtcccattacaaa
taattttgtgtgtgggcttcccttgtatgttcttaggctttgtcacctct
gtgagtggaggtgcggttcataactgtaccccaccatatacccctgggtg
acagtggatactctgagtatctggaacgcttaccgttataaaagtcttag
gcatgacttttgtattttaggttaaagaaaggcctgatgtgggagtatat
atcaaagacttatcagcatatgtagtcaacaacgctgacgacatggatag
aatcatgactctaggccacaaaaaccgtgagtgtgctgtgttaccgtgat
gggacgcctgtctgagggctggtcgagagtgtgctgtgttaccgtgatgg
gacgcctgtctgaatgctggtccagaagcagataagatggcttttgccct
atagaggttgaagtttagtcttttattttattattattagttattggttt
tgttttgtttttgggagacagtgtttctctgtgtagccttgtttatcttg
gaacttgctctgtagaccaggctggccttgaactcacctagatccaccta
cctctgcttcctcagtgctgagattaaaggcgtgtgccaccactgcctgt
cgaatgtttttgttttaagaccactcattttattattatctaggaaatat
atctgaaacgaacagtagtagtgcagattgttttttcatactgataagtt
ttttttgtgacagtcttttaaaaaatatttttattttatgtgtattttta
aaaagatttattatttatttttatgtatgttagtacaccgtagctggaca
gatggttgtaaactttcatgttgttgttgggaattgaaatttaaggactt
cttgctcattccgttcaactccaatgatcagccctgcattgctccagtca
ccctgctcactccagtcaattcgcttgctcggtccctgttggctccggcc
caaagaatttatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53528913_53529839
seq2: B6Ng01-015H18.b_45_964 (reverse)

seq1  ACACATACCTACACACACCTCTCCACACACATACACGTGCATGGACACAC  50
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACAC-TACCT-CACACACCTCTCCACACACATACACGTGCATGGACACAC  48

seq1  ACGGGTAATAAATAATATTCCTACTGTAAGAAAGCTTGCAATCAGGTTGA  100
      || |||||||||| ||||||||||||||||||||| ||| ||||||||||
seq2  AC-GGTAATAAAT-ATATTCCTACTGTAAGAAAGC-TGC-ATCAGGTTGA  94

seq1  GGAGATTAAACTCATAGAGGAAACGTTAGTGACCTAGCTTTATGAGAAAT  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGA-TAAACTCATAGAGGAAACGTTAGTGACCTAGCTTTATGAGAAAT  143

seq1  ACGATTCTGAGCTGTGAGGTGCACAGCTGTCACCTGTACTTCCAATACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTCTGAGCTGTGAGGTGCACAGCTGTCACCTGTACTTCCAATACTT  193

seq1  GAGCTGCTAAAGCTGGAAGATTGAGAGTAGCCAGCTTGGGTGACATTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCTAAAGCTGGAAGATTGAGAGTAGCCAGCTTGGGTGACATTGTC  243

seq1  AGAGTCTCCATCTCAAAAGGAAGGAGAGGAGAGAGCAGGGGAGGAACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTCCATCTCAAAAGGAAGGAGAGGAGAGAGCAGGGGAGGAACCTG  293

seq1  GTATAGTGGTGCACACCTGTAACCCCGGCACTTGAGAGATGGAGGCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTGGTGCACACCTGTAACCCCGGCACTTGAGAGATGGAGGCAGGA  343

seq1  GGACCAGCAGGTCAGGGACATCATCAGCTACATAGTGAGTTGATACAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGCAGGTCAGGGACATCATCAGCTACATAGTGAGTTGATACAAGA  393

seq1  CCCTAGACCTAAAAAGAAAAGAAAATCATTGTACACACATGCCCAGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGACCTAAAAAGAAAAGAAAATCATTGTACACACATGCCCAGACAC  443

seq1  AACATTATCCATAGAAGTTGAAAGAAGGAAGAAACCTAAGCATCCATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATCCATAGAAGTTGAAAGAAGGAAGAAACCTAAGCATCCATCAG  493

seq1  CAGAAAAATGGACAAACAAAACAGGATCTGTATGTAAGACTGAGTATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAATGGACAAACAAAACAGGATCTGTATGTAAGACTGAGTATTGT  543

seq1  TCAGCAGGGAAGAAAATTCTCACACATGCTAGAACACCATGAACTCCGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGGGAAGAAAATTCTCACACATGCTAGAACACCATGAACTCCGAA  593

seq1  GTCCAAGCACAATAATCCTGTTATAAAAGACAACAGTGTGGCTGTAGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGCACAATAATCCTGTTATAAAAGACAACAGTGTGGCTGTAGTGA  643

seq1  AACCCAAGGGTTCCGAAGACAGGGCTGATGGGGCTGCGGGGGACCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAGGGTTCCGAAGACAGGGCTGATGGGGCTGCGGGGGACCTCTGA  693

seq1  CAGTAGTTACGGAGTTTCTTCTATTTTGCAAAGTGAACAGCCTACAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTTACGGAGTTTCTTCTATTTTGCAAAGTGAACAGCCTACAATTT  743

seq1  ATTTTTGCATATGATGCTACTGGACCCAACACATAGTTGCTGAAATGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCATATGATGCTACTGGACCCAACACATAGTTGCTGAAATGAAA  793

seq1  CATCTCATGTTACAGTGTATTTCTTAATAATTTTTAAAAATTGAAAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATGTTACAGTGTATTTCTTAATAATTTTTAAAAATTGAAAGAAA  843

seq1  ACCAATATTGAGCCCACCAGGCAGCACACACATTTCGTTTAACACTCGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATATTGAGCCCACCAGGCAGCACACACATTTCGTTTAACACTCGGC  893

seq1  AGGCTGAGGCAGAGGGATCAGGAATTC  927
      |||||||||||||||||||||||||||
seq2  AGGCTGAGGCAGAGGGATCAGGAATTC  920

seq1: chr11_53393010_53394024
seq2: B6Ng01-015H18.g_68_1083

seq1  GAATTCTTTCCTTGGACTGTCCTGTATTTTCTTTGTGGTCCCATTACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTTGGACTGTCCTGTATTTTCTTTGTGGTCCCATTACAAA  50

seq1  TAATTTTGTGTGTGGGCTTCCCTTGTATGTTCTTAGGCTTTGTCACCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGTGTGTGGGCTTCCCTTGTATGTTCTTAGGCTTTGTCACCTCT  100

seq1  GTGAGTGGAGGTGCGGTTCATAACTGTACCCCACCATATACCCCTGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGGAGGTGCGGTTCATAACTGTACCCCACCATATACCCCTGGGTG  150

seq1  ACAGTGGATACTCTGAGTATCTGGAACGCTTACCGTTATAAAAGTCTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGATACTCTGAGTATCTGGAACGCTTACCGTTATAAAAGTCTTAG  200

seq1  GCATGACTTTTGTATTTTAGGTTAAAGAAAGGCCTGATGTGGGAGTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACTTTTGTATTTTAGGTTAAAGAAAGGCCTGATGTGGGAGTATAT  250

seq1  ATCAAAGACTTATCAGCATATGTAGTCAACAACGCTGACGACATGGATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGACTTATCAGCATATGTAGTCAACAACGCTGACGACATGGATAG  300

seq1  AATCATGACTCTAGGCCACAAAAACCGTGAGTGTGCTGTGTTACCGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGACTCTAGGCCACAAAAACCGTGAGTGTGCTGTGTTACCGTGAT  350

seq1  GGGACGCCTGTCTGAGGGCTGGTCGAGAGTGTGCTGTGTTACCGTGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGCCTGTCTGAGGGCTGGTCGAGAGTGTGCTGTGTTACCGTGATGG  400

seq1  GACGCCTGTCTGAATGCTGGTCCAGAAGCAGATAAGATGGCTTTTGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCCTGTCTGAATGCTGGTCCAGAAGCAGATAAGATGGCTTTTGCCCT  450

seq1  ATAGAGGTTGAAGTTTAGTCTTTTATTTTATTATTATTAGTTATTGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGTTGAAGTTTAGTCTTTTATTTTATTATTATTAGTTATTGGTTT  500

seq1  TGTTTTGTTTTTGGGAGACAGTGTTTCTCTGTGTAGCCTTGTTTATCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTTGGGAGACAGTGTTTCTCTGTGTAGCCTTGTTTATCTTG  550

seq1  GAACTTGCTCTGTAGACCAGGCTGGCCTTGAACTCACCTAGATCCACCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGCTCTGTAGACCAGGCTGGCCTTGAACTCACCTAGATCCACCTA  600

seq1  CCTCTGCTTCCTCAGTGCTGAGATTAAAGGCGTGTGCCACCACTGCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTCCTCAGTGCTGAGATTAAAGGCGTGTGCCACCACTGCCTGT  650

seq1  CGAATGTTTTTGTTTTAAGACCACTCATTTTATTATTATCTAGGAAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGTTTTTGTTTTAAGACCACTCATTTTATTATTATCTAGGAAATAT  700

seq1  ATCTG-AACGAACAGTAGTAGTGCAGATTG-TTTTTCATACTGATTAAGT  748
      ||||| |||||||||||||||||||||||| ||||||||||||| |||||
seq2  ATCTGAAACGAACAGTAGTAGTGCAGATTGTTTTTTCATACTGA-TAAGT  749

seq1  TTCTTTTTGTGACAGTCTTTTAAAAAATATTTTTATTTTATGTGTATTTT  798
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TT-TTTTTGTGACAGTCTTTTAAAAAATATTTTTATTTTATGTGTATTTT  798

seq1  TAAAAAGATTTATTTATTTATTTTTATGTATGTTAGTACACCGTAGCTGT  848
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  TAAAAAGATTTA-TTATTTATTTTTATGTATGTTAGTACACCGTAGCTGG  847

seq1  ACAGATGGTTGTAAACTTTCATGTTGTTGTTGGGAATTGAAATTTTAGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACAGATGGTTGTAAACTTTCATGTTGTTGTTGGGAATTGAAATTTAAGGA  897

seq1  CTTC-TGCTCATTCCGGTCAACTCCGATGATCAGCCCTGC-TTGCTCCAG  946
      |||| ||||||||||| |||||||| |||||||||||||| |||||||||
seq2  CTTCTTGCTCATTCCGTTCAACTCCAATGATCAGCCCTGCATTGCTCCAG  947

seq1  TCAACCCTGCTCACTCCAGTCAATTCGCTTGCTCAGTCCCTGTTTGCTCC  996
      || ||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  TC-ACCCTGCTCACTCCAGTCAATTCGCTTGCTCGGTCCCTGTTGGCTCC  996

seq1  GGCCCAAAG-ATTTATTTAT  1015
      ||||||||| ||||||||||
seq2  GGCCCAAAGAATTTATTTAT  1016