BAC Information

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BAC

Clone NameB6Ng01-015J23
Chromosome11 (Build37)
Map Location 97,831,693 - 97,832,609
singlet/doubletsinglet
Overlap genePlxdc1
Upstream geneSp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47
Downstream geneArl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015J23.bB6Ng01-015J23.g
ACCDH849828DH849829
length920130
definitionDH849828|Mus musculus domesticus DNA, BAC clone: B6Ng01-015J23, 5' end.DH849829|Mus musculus domesticus DNA, BAC clone: B6Ng01-015J23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatccctagcaacgtggagggagactcagggcacttcctgtgca
gagaacgctctagatgtggctgttttctgacagccacagagctacgatga
gcctaaggaacactcatttttgccgcatgtctcttggcacctccactgca
ggacgcatacgcgtttgtgttgcttgccttcctctggcactttagagcca
ggctgtctgtcacttgtgatccctgcctgtccctgaaggaaggaggggct
cccacccccaggtctccaatggtgttagaagacccagtcccagggtggac
tcaggggtctctaaggacctctgctccattgtcctggtgcccactcacca
gcgccttgtgtgaggggctacctgtgtctccagagaatctgtgtccattt
tacactcagctctgccctaagcaacctttagccagggctgccgctgaccc
gtcttcaaggcaaggtccctcactaagcctggagcttgccgttgggctag
gctaacaggatcctgctatctctgcttctcagcactggtagccaacatgc
atggccgtgccctgcttttacgtggttggggggtaggattcaaactcaga
tcctcttgctttcataacaagctctcttacccacagcacctttcccccag
tcccttgcttgcttgcttgcttgtttgcttgcttgctttgcagcccattg
tatggaagatgcggcaatgaggtcaccacagtacaaacaaagtagccaca
aattggccagtaaaaagacaataagtatggtgcagttggttcacactttg
gaaactcaatccttgggaggctgaggcaggaggattcctgggagctgaat
gcccatccttaggcatatacgagactgtctcaaaaacaaataagaccatt
atgagcttttatagtgacgg
aaggtcacctagactacactctgagaccttggatggatggacggacagac
ggatggacagacagccaggtgtacagacagacagacagaagagaaagaga
gggagggagggagggaagaaggaagcaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97831693_97832609
seq2: B6Ng01-015J23.b_46_965 (reverse)

seq1  CCGTCACTTATAAAAGCTTCATAATGGTCTTATTTTGTTTTTGAGACAGT  50
      ||||||| ||||||||| |||||||||||||| |||||||||||||||||
seq2  CCGTCAC-TATAAAAGC-TCATAATGGTCTTA-TTTGTTTTTGAGACAGT  47

seq1  CTCTGTATATGCCT-AGGCT-GGCCTTCAGCTCCCAGGAATCCTCCTGCC  98
      ||| |||||||||| ||| | ||| |||||||||||||||||||||||||
seq2  CTC-GTATATGCCTAAGGATGGGCATTCAGCTCCCAGGAATCCTCCTGCC  96

seq1  TCAGCCTCCCAAGGATTGGGTTTCC-AAGTGTGAACC-ACTGCACCCTAC  146
      |||||||||||||||||| |||||| ||||||||||| |||||||| |||
seq2  TCAGCCTCCCAAGGATTGAGTTTCCAAAGTGTGAACCAACTGCACCATAC  146

seq1  -TATTGTCTTTTTACTGGCC-ATTTGTGGCTTCTTTGTTTGTACTGTGGT  194
       ||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  TTATTGTCTTTTTACTGGCCAATTTGTGGCTACTTTGTTTGTACTGTGGT  196

seq1  GACCTCATTGCCGCATCTTCCATACAATGGGCTGC-AAGCAAGCAAGCAA  243
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GACCTCATTGCCGCATCTTCCATACAATGGGCTGCAAAGCAAGCAAGCAA  246

seq1  ACAAGCAAGCAAGCAAGCAAGGGACTGGGGGAAAGGTGCTGTGGGTAAGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAGCAAGCAAGCAAGGGACTGGGGGAAAGGTGCTGTGGGTAAGA  296

seq1  GAGCTTGTTATGAAAGCAAGAGGATCTGAGTTTGAATCCTACCCCCCAAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGTTATGAAAGCAAGAGGATCTGAGTTTGAATCCTACCCCCCAAC  346

seq1  CACGTAAAAGCAGGGCACGGCCATGCATGTTGGCTACCAGTGCTGAGAAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTAAAAGCAGGGCACGGCCATGCATGTTGGCTACCAGTGCTGAGAAG  396

seq1  CAGAGATAGCAGGATCCTGTTAGCCTAGCCCAACGGCAAGCTCCAGGCTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATAGCAGGATCCTGTTAGCCTAGCCCAACGGCAAGCTCCAGGCTT  446

seq1  AGTGAGGGACCTTGCCTTGAAGACGGGTCAGCGGCAGCCCTGGCTAAAGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGGACCTTGCCTTGAAGACGGGTCAGCGGCAGCCCTGGCTAAAGG  496

seq1  TTGCTTAGGGCAGAGCTGAGTGTAAAATGGACACAGATTCTCTGGAGACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTAGGGCAGAGCTGAGTGTAAAATGGACACAGATTCTCTGGAGACA  546

seq1  CAGGTAGCCCCTCACACAAGGCGCTGGTGAGTGGGCACCAGGACAATGGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGCCCCTCACACAAGGCGCTGGTGAGTGGGCACCAGGACAATGGA  596

seq1  GCAGAGGTCCTTAGAGACCCCTGAGTCCACCCTGGGACTGGGTCTTCTAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTCCTTAGAGACCCCTGAGTCCACCCTGGGACTGGGTCTTCTAA  646

seq1  CACCATTGGAGACCTGGGGGTGGGAGCCCCTCCTTCCTTCAGGGACAGGC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTGGAGACCTGGGGGTGGGAGCCCCTCCTTCCTTCAGGGACAGGC  696

seq1  AGGGATCACAAGTGACAGACAGCCTGGCTCTAAAGTGCCAGAGGAAGGCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCACAAGTGACAGACAGCCTGGCTCTAAAGTGCCAGAGGAAGGCA  746

seq1  AGCAACACAAACGCGTATGCGTCCTGCAGTGGAGGTGCCAAGAGACATGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACACAAACGCGTATGCGTCCTGCAGTGGAGGTGCCAAGAGACATGC  796

seq1  GGCAAAAATGAGTGTTCCTTAGGCTCATCGTAGCTCTGTGGCTGTCAGAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAATGAGTGTTCCTTAGGCTCATCGTAGCTCTGTGGCTGTCAGAA  846

seq1  AACAGCCACATCTAGAGCGTTCTCTGCACAGGAAGTGCCCTGAGTCTCCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCACATCTAGAGCGTTCTCTGCACAGGAAGTGCCCTGAGTCTCCC  896

seq1  TCCACGTTGCTAGGGATGGAATTC  917
      ||||||||||||||||||||||||
seq2  TCCACGTTGCTAGGGATGGAATTC  920