BAC Information

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BAC

Clone NameB6Ng01-015K10
Chromosome11 (Build37)
Map Location 26,665,065 - 26,812,991
singlet/doubletdoublet
Overlap geneOTTMUSG00000005300, LOC666270
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1
Downstream geneLOC100042367, LOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015K10.bB6Ng01-015K10.g
ACCDH849849DH849850
length1,058679
definitionDH849849|Mus musculus domesticus DNA, BAC clone: B6Ng01-015K10, 5' end.DH849850|Mus musculus domesticus DNA, BAC clone: B6Ng01-015K10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,665,065 - 26,666,121)(26,812,451 - 26,812,991)
sequence
gaattcttgttggtgaataaagttcccttggtcaacaagcactctcagaa
ggatctagtagtttcttctttcaaagtgtcacagatatttaaaaggcaga
tgaaagaccagtgattagctgcagtttcgatagctgtgataaaaatacaa
ctcggggaataaagaatggaagtcaaggcaggagcgcaggttagtaacca
ggagcactgggcatggagaagtgctgctttctggcttgtccttcatggct
tgctcagcctgctttcttatgcactttagcactcaagcacaggttggctc
tgaccacattgaactgggttatctcacatcactaatcaataaagaaaatg
ctccataggcttacctaggggccagtctggtgggaccattttttaaaatt
aggttccctttctcaaacagttgtagcttgtgtaaatttgacataaacct
agccagaaagcagtctattagaaatgagtttagaggtgctcattttgtga
acacccacgtgatgtttcactgttcactaggggcattttacttggacata
gttcatgatgcttgttatcagagaaaagtttccacagagaggccttttgc
agctactagataggagaagttgaaaggaaaaacagtgataatcatgaaac
ggaaaagtaaaggtttaatattcagaggaactaggaatccaagttttacc
gcaactcatatcaacttaacaatctattaaatggtaccttatattctgga
aaaaccaacacaaatccacttactttcgatctataaccttattcttgggc
aagaattatttttattttggtctgtataatttcttccatatacctacatt
ttcccaccgtgttttaagctctttggtgattgcttgctgactcttttcct
agtatatggttttggatcctagtacatatgcaaaacaaaattgatgtatg
ttatcagcagacatgttagcatttttatggaggaggtactgactgcatgc
tgcagtttaatttggtttaaggaaaacagtaacctttaagcagttaaaag
cctagttg
gaattccagtagcacaggaaataagatcagaaattgacacatgggataac
ataccaccataaagcttccatataataaaggaaactgtgagaaggcagcc
tgaaaaatgggggggggggttgccaactagacatctggcagaggaatgta
taaagatctcaaaaagctaagcatcaagaaaaccagcacccaactttgtt
ttgtaaggggctatgacactgaatagaaagttctcaaaagaaggaatatc
aatggttaataaagccttcaagacacatttaacatatttaaccatcagat
aaatgcaatgtaaaactacttgagattcagtctcaatccaatcagaatgt
ctgaacagaattttacttaggtacatccaaattttattttcacattcttc
ctttgtctgagctggggccacagtagggatgtggaagggttgtgtgtagc
ctatacagtctgaaatttagtcagggaaacacacatggacatttaaaagt
ttaggtattcatataaaatattaatctaattatttagaccaagtaaaagt
aataaaggaaatgaagaaatcagatacttaatatctacttccctgaaaaa
aatgtatcaagaaaatagaaaaagagaatcttctcctaagtcatggtcac
acataaaattctaattttcagtatcactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26665065_26666121
seq2: B6Ng01-015K10.b_45_1102

seq1  GAATTCTTGTTGGTGAATAAAGTTCCCTTGGTCAACAAGCACTCTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTGGTGAATAAAGTTCCCTTGGTCAACAAGCACTCTCAGAA  50

seq1  GGATCTAGTAGTTTCTTCTTTCAAAGTGTCACAGATATTTAAAAGGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTAGTAGTTTCTTCTTTCAAAGTGTCACAGATATTTAAAAGGCAGA  100

seq1  TGAAAGACCAGTGATTAGCTGCAGTTTCGATAGCTGTGATAAAAATACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACCAGTGATTAGCTGCAGTTTCGATAGCTGTGATAAAAATACAA  150

seq1  CTCGGGGAATAAAGAATGGAAGTCAAGGCAGGAGCGCAGGTTAGTAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGGAATAAAGAATGGAAGTCAAGGCAGGAGCGCAGGTTAGTAACCA  200

seq1  GGAGCACTGGGCATGGAGAAGTGCTGCTTTCTGGCTTGTCCTTCATGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACTGGGCATGGAGAAGTGCTGCTTTCTGGCTTGTCCTTCATGGCT  250

seq1  TGCTCAGCCTGCTTTCTTATGCACTTTAGCACTCAAGCACAGGTTGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCCTGCTTTCTTATGCACTTTAGCACTCAAGCACAGGTTGGCTC  300

seq1  TGACCACATTGAACTGGGTTATCTCACATCACTAATCAATAAAGAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACATTGAACTGGGTTATCTCACATCACTAATCAATAAAGAAAATG  350

seq1  CTCCATAGGCTTACCTAGGGGCCAGTCTGGTGGGACCATTTTTTAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGGCTTACCTAGGGGCCAGTCTGGTGGGACCATTTTTTAAAATT  400

seq1  AGGTTCCCTTTCTCAAACAGTTGTAGCTTGTGTAAATTTGACATAAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCCTTTCTCAAACAGTTGTAGCTTGTGTAAATTTGACATAAACCT  450

seq1  AGCCAGAAAGCAGTCTATTAGAAATGAGTTTAGAGGTGCTCATTTTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAAGCAGTCTATTAGAAATGAGTTTAGAGGTGCTCATTTTGTGA  500

seq1  ACACCCACGTGATGTTTCACTGTTCACTAGGGGCATTTTACTTGGACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACGTGATGTTTCACTGTTCACTAGGGGCATTTTACTTGGACATA  550

seq1  GTTCATGATGCTTGTTATCAGAGAAAAGTTTCCACAGAGAGGCCTTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGATGCTTGTTATCAGAGAAAAGTTTCCACAGAGAGGCCTTTTGC  600

seq1  AGCTACTAGATAGGAGAAGTTGAAAGGAAAAACAGTGATAATCATGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTAGATAGGAGAAGTTGAAAGGAAAAACAGTGATAATCATGAAAC  650

seq1  GGAAAAGTAAAGG-TTAATATTCAGAGGAACTAGGAATCCAAGTTTTACC  699
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGTAAAGGTTTAATATTCAGAGGAACTAGGAATCCAAGTTTTACC  700

seq1  GCAACTCATATCAACTTAACAATCTATTAAATGGTACCTTATATTCTGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCATATCAACTTAACAATCTATTAAATGGTACCTTATATTCTGGA  750

seq1  AAAACCAACACAAATCCACTTACTTTCGATCTATAACCTTATTCTTGGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAACACAAATCCACTTACTTTCGATCTATAACCTTATTCTTGGGC  800

seq1  AAGAATTA-TTTTATTTTGGTCTGTATAATTTCTTCCATATACCTACATT  848
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTATTTTTATTTTGGTCTGTATAATTTCTTCCATATACCTACATT  850

seq1  TTCCCACCGTGTTTTAAGCTCTTT-GTGATTGCTTGCTGACTCTTTTCCT  897
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCCCACCGTGTTTTAAGCTCTTTGGTGATTGCTTGCTGACTCTTTTCCT  900

seq1  AGTATATGGTTTTGGATCCTAGTACATATTGCAAAAACAAAATTGATGTA  947
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  AGTATATGGTTTTGGATCCTAGTACATA-TGC-AAAACAAAATTGATGTA  948

seq1  TGTTATCAGCAGACATG-TAGCATTTTTATGGAGAAGGTACTGTACTGCA  996
      ||||||||||||||||| |||||||||||||||| |||||||| ||||||
seq2  TGTTATCAGCAGACATGTTAGCATTTTTATGGAGGAGGTACTG-ACTGCA  997

seq1  TGCTGCAGTTT-ATTTGTATAAAGGAAAACAGTAACCTTTAAGCAGTTTA  1045
      ||||||||||| |||||  | ||||||||||||||||||||||||| |||
seq2  TGCTGCAGTTTAATTTGGTTTAAGGAAAACAGTAACCTTTAAGCAG-TTA  1046

seq1  AAAGGCTAGTTG  1057
      |||| |||||||
seq2  AAAGCCTAGTTG  1058

seq1: chr11_26812451_26812991
seq2: B6Ng01-015K10.g_207_748 (reverse)

seq1  GAGTGATACTG-AAATTAGAATTTTCTGTGTGACCATGACTTTGGAGAAG  49
      ||||||||||| ||||||||||||| |||||||||||||||| |||||||
seq2  GAGTGATACTGAAAATTAGAATTTTATGTGTGACCATGACTTAGGAGAAG  50

seq1  ATTCTCTTTTTCTTTTTTCTTGATACATTTTTTTCAGGGAAGTAGATATT  99
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTTTTCTATTTTCTTGATACATTTTTTTCAGGGAAGTAGATATT  100

seq1  AAGTATCTGATTTCTTCATTTCCTTTATTACTTTTACTTGGTCTAAATAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTGATTTCTTCATTTCCTTTATTACTTTTACTTGGTCTAAATAA  150

seq1  TTAGATTAATATTTTATTTGAATACCTAAACTTTTAAATGTCCATGTGTG  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTAGATTAATATTTTATATGAATACCTAAACTTTTAAATGTCCATGTGTG  200

seq1  TTTCCCTGACTAAATTTCAGACTGTATAGGCTACACACAACCCTTCCACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGACTAAATTTCAGACTGTATAGGCTACACACAACCCTTCCACA  250

seq1  TCCCTACTGTGGCCCCAGCTCAGACAAAGGAAGAATGTGAAAATAAAATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACTGTGGCCCCAGCTCAGACAAAGGAAGAATGTGAAAATAAAATT  300

seq1  TGGATGTACCTAAGTAAAATTCTGTTCAGACATTCTGATTGGATTGAGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTACCTAAGTAAAATTCTGTTCAGACATTCTGATTGGATTGAGAC  350

seq1  TGAATCTCAAGTAGTTTTACATTGCATTTATCTGATGGTTAAATATGTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTCAAGTAGTTTTACATTGCATTTATCTGATGGTTAAATATGTTA  400

seq1  AATGTGTCTTGAAGGCTTTATTAACCATTGATATTCCTTCTTTTGAGAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTCTTGAAGGCTTTATTAACCATTGATATTCCTTCTTTTGAGAAC  450

seq1  TTTCTATTCAGTGTCATAGCCCCTTACAAAACAAAGTTGGGTGCTGGTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTCAGTGTCATAGCCCCTTACAAAACAAAGTTGGGTGCTGGTTT  500

seq1  TCTTGATGCTTAGCTTTTTGAGATCTTTATACATTCCTCTGC  541
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATGCTTAGCTTTTTGAGATCTTTATACATTCCTCTGC  542