BAC Information

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BAC

Clone NameB6Ng01-017C23
Chromosome11 (Build37)
Map Location 97,852,349 - 97,996,319
singlet/doubletdoublet
Overlap geneArl5c, Cacnb1, Rpl19, Stac2, Fbxl20
Upstream geneSp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1
Downstream geneLOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017C23.bB6Ng01-017C23.g
ACCDH850940DH850941
length96778
definitionDH850940|Mus musculus domesticus DNA, BAC clone: B6Ng01-017C23, 5' end.DH850941|Mus musculus domesticus DNA, BAC clone: B6Ng01-017C23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,996,224 - 97,996,319)(97,852,349 - 97,853,124)
sequence
actcagtatctgcatagatttttgttgtcattcttttaacctttgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtga
gaattctccaggtctcatgcaaggccttcatgccctgaagtatttgatcc
tgatccaagcacacgcaaatgcacttgtgcacacacacacgcacacgcac
acgcgcacacacacacgcacacacgcacacacgcacgcacacatgcacac
acacacacaaagttgtgagcttccctcatctatttctaatcatctccttt
ctccatcttcctgtttatcactttgtttctttgttttggttttagttctt
gtggcagggccttgatatgtagcccaggctagcctctcaccatacactgg
aggataaccttgaactaataatcctcttgtaatcccaagtgccgggatta
caagagtaattgcagtagctcagggcttcatgtggggccacacctccagc
tccaaggcaggcattttctgcctagttttctagccaccattttcccaatg
cacagaatggtacctggcaccaagtaggtatggcctgtccctgtgagatc
tttctgcagcagcttcttcttcttcttcttcttcttcttcttcttcttct
tcttcttcttcttcttctctctctctctctctctttttgttttgttttgt
tttgtttttttgtttttttgagacagggtttctctgtgtagccctggctg
tcctggaactcattctatagaccaggctggcctagaactcagaaatctgc
ctgcctctgcttcccaaagtgctgggattaaatgtgaacaccaccaagct
gcctcctcctcctcctctttcctcttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97996224_97996319
seq2: B6Ng01-017C23.b_52_147 (reverse)

seq1  TCACACACACACACACACACACACACACACACACACACACACACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACACACACACACACACACACACACACACACACACACACACACAC  50

seq1  ACAAAGGTTAAAAGAATGACAACAAAAATCTATGCAGATACTGAGT  96
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTTAAAAGAATGACAACAAAAATCTATGCAGATACTGAGT  96

seq1: chr11_97852349_97853124
seq2: B6Ng01-017C23.g_67_844

seq1  GAATTCTCCAGGTCTCATGCAAGGCCTTCATGCCCTGAAGTATTTGATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGGTCTCATGCAAGGCCTTCATGCCCTGAAGTATTTGATCC  50

seq1  TGATCCAAGCACACGCAAATGCACTTGTGCACACACACACGCACACGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAAGCACACGCAAATGCACTTGTGCACACACACACGCACACGCAC  100

seq1  ACGCGCACACACACACGCACACACGCACACACGCACGCACACATGCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGCACACACACACGCACACACGCACACACGCACGCACACATGCACAC  150

seq1  ACACACACAAAGTTGTGAGCTTCCCTCATCTATTTCTAATCATCTCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAAAGTTGTGAGCTTCCCTCATCTATTTCTAATCATCTCCTTT  200

seq1  CTCCATCTTCCTGTTTATCACTTTGTTTCTTTGTTTTGGTTTTAGTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTTCCTGTTTATCACTTTGTTTCTTTGTTTTGGTTTTAGTTCTT  250

seq1  GTGGCAGGGCCTTGATATGTAGCCCAGGCTAGCCTCTCACCATACACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGGCCTTGATATGTAGCCCAGGCTAGCCTCTCACCATACACTGG  300

seq1  AGGATAACCTTGAACTAATAATCCTCTTGTAATCCCAAGTGCCGGGATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAACCTTGAACTAATAATCCTCTTGTAATCCCAAGTGCCGGGATTA  350

seq1  CAAGAGTAATTGCAGTAGCTCAGGGCTTCATGTGGGGCCACACCTCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTAATTGCAGTAGCTCAGGGCTTCATGTGGGGCCACACCTCCAGC  400

seq1  TCCAAGGCAGGCATTTTCTGCCTAGTTTTCTAGCCACCATTTTCCCAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCAGGCATTTTCTGCCTAGTTTTCTAGCCACCATTTTCCCAATG  450

seq1  CACAGAATGGTACCTGGCACCAAGTAGGTATGGCCTGTCCCTGTGAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATGGTACCTGGCACCAAGTAGGTATGGCCTGTCCCTGTGAGATC  500

seq1  TTTCTGCAGCAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCAGCAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  550

seq1  TCTTCTTCTTCTTCTTCTCTCTCTCTCTCTCTCTTTTTGTTTTGTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTCTCTCTCTCTCTCTCTTTTTGTTTTGTTTTGT  600

seq1  TTTGTTTTTTTGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTG  650

seq1  TCCTGGAACTCATTCTATAGACCAGGCTGGCCTAGAACTCAGAAATCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCATTCTATAGACCAGGCTGGCCTAGAACTCAGAAATCTGC  700

seq1  CTGCCTCTGCTTCCC-AAGTGCTGGGATTAAATGTGAACACCACCAAGCT  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCTTCCCAAAGTGCTGGGATTAAATGTGAACACCACCAAGCT  750

seq1  GCCTCCTCCTCCTCCTC-TTCCTCTTCC  776
      ||||||||||||||||| ||||||||||
seq2  GCCTCCTCCTCCTCCTCTTTCCTCTTCC  778