BAC Information

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BAC

Clone NameB6Ng01-017D18
Chromosome11 (Build37)
Map Location 86,310,258 - 86,441,107
singlet/doubletdoublet
Overlap gene0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1
Downstream genePtrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017D18.bB6Ng01-017D18.g
ACCDH850976DH850977
length7691,007
definitionDH850976|Mus musculus domesticus DNA, BAC clone: B6Ng01-017D18, 5' end.DH850977|Mus musculus domesticus DNA, BAC clone: B6Ng01-017D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,440,339 - 86,441,107)(86,310,258 - 86,311,272)
sequence
gaattctcctaatcaaggatggaactcagttggtagagtacgtgcctaat
gcttacacaagacacctgtaatccatcacataaatggtagacgaagtcag
cacagacattcatcttaggctttgtaaagtttgagacagcctggacattg
tcagtccccttttcaaaagaaaaaataacttgactattcagaaatacttg
gctttttctcaaattgtatatagtgtgaaatccagtctgtataacaattt
acttggacaaacccacaaaaacagtcttttggctctttaacagtttttta
tatgttacatggattttgtcttgttttgtttgttttgctgtttatttgct
tgtattgatgctttggatggaacttagatcctcacacatgctacgaaacc
cttctaccgctgagctgcactcccagcccaacattgatggttttcagtta
gatagaatacctggttaatacatgttaaatccttttaaagcaaagagctc
tggagtttttcagtccagaacttgctgttcttagtaaataaaccgtgatg
atttattaaacttgtaaaaacgttaccgctgctctgatgaaatagaataa
tgtgatgaagctctttctcctatctctgcttgccaggctcttgtgtctgt
tcctctgtatgtgtcaccttgctcattcctacctatcaagttcctgcagc
ttctccagtgtttcatgtcattgataggagagttgattggaatttttgtt
ggtggtggtcggttgtttg
gaattccacatcgaggagaaagggagaaaacagcaactttcactcagggg
aagccagaacattagtcatctccagctgatttctgcaagaagaaaaggta
atggcgcactttacctttccttgtgtttcctctgaagaatctgaaatctt
taccatgactaaagggctgctactgcgaaggcttcttcgcatttatcatc
agtaacaaggagaagttgagacaaaaacaaattagccgtgtaagacagac
taagctgggttctagagatggctttagcagattagaacatgtgctgcagt
tccaggaccagagtttatgctgaatgctgggattaaagtcgtgtgctacc
accaccaccaccaccacctgactaaagttaaactttaaagacagactaaa
ccagtacatggcttaataaggatagtgaccaagtgtcatgggtgaaatca
tgtctgtacagctgctacctagattgacagaggtacaggaagactgtgat
accctcaaccagataaacaccacatcactttttgttttaaatgagtattc
actctatatttgtgtatattgtatgtgtccacacacacatagagtctatt
atacacacacacacaccttgcctaatgagaatcactgctaagtatattaa
atcaccttcctggctttgtggtgaagcttagttgttagatatacaaggga
tgaaggagagaaagtgatttgtgattaaaatttcactgtgaaagtcagct
gaaatgacttcctgtttaaaactattacattcatccctcttaacacttat
cacagttttctccaggcaacttgtttttttaatatgattaaataacaaag
ggagtttgtagaagactgaggtgggtggattttttcacaaggctatcact
taaaataggaaagggaagtaacttatagcaaatattttaccccagcaatt
aaagcagaagcgggtgaattgagttgatgccatctagtctcagagcagtt
ccaggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_86440339_86441107
seq2: B6Ng01-017D18.b_45_813 (reverse)

seq1  CAAACAACCGACCACCACCAACAAAAATTCCAATCAACTCTCCTATCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACCGACCACCACCAACAAAAATTCCAATCAACTCTCCTATCAAT  50

seq1  GACATGAAACACTGGAGAAGCTGCAGGAACTTGATAGGTAGGAATGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAAACACTGGAGAAGCTGCAGGAACTTGATAGGTAGGAATGAGCA  100

seq1  AGGTGACACATACAGAGGAACAGACACAAGAGCCTGGCAAGCAGAGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACACATACAGAGGAACAGACACAAGAGCCTGGCAAGCAGAGATAG  150

seq1  GAGAAAGAGCTTCATCACATTATTCTATTTCATCAGAGCAGCGGTAACGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGCTTCATCACATTATTCTATTTCATCAGAGCAGCGGTAACGT  200

seq1  TTTTACAAGTTTAATAAATCATCACGGTTTATTTACTAAGAACAGCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAGTTTAATAAATCATCACGGTTTATTTACTAAGAACAGCAAGT  250

seq1  TCTGGACTGAAAAACTCCAGAGCTCTTTGCTTTAAAAGGATTTAACATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTGAAAAACTCCAGAGCTCTTTGCTTTAAAAGGATTTAACATGT  300

seq1  ATTAACCAGGTATTCTATCTAACTGAAAACCATCAATGTTGGGCTGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCAGGTATTCTATCTAACTGAAAACCATCAATGTTGGGCTGGGAG  350

seq1  TGCAGCTCAGCGGTAGAAGGGTTTCGTAGCATGTGTGAGGATCTAAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTCAGCGGTAGAAGGGTTTCGTAGCATGTGTGAGGATCTAAGTTC  400

seq1  CATCCAAAGCATCAATACAAGCAAATAAACAGCAAAACAAACAAAACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAAGCATCAATACAAGCAAATAAACAGCAAAACAAACAAAACAAG  450

seq1  ACAAAATCCATGTAACATATAAAAAACTGTTAAAGAGCCAAAAGACTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCCATGTAACATATAAAAAACTGTTAAAGAGCCAAAAGACTGTT  500

seq1  TTTGTGGGTTTGTCCAAGTAAATTGTTATACAGACTGGATTTCACACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGGTTTGTCCAAGTAAATTGTTATACAGACTGGATTTCACACTAT  550

seq1  ATACAATTTGAGAAAAAGCCAAGTATTTCTGAATAGTCAAGTTATTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTTGAGAAAAAGCCAAGTATTTCTGAATAGTCAAGTTATTTTTT  600

seq1  CTTTTGAAAAGGGGACTGACAATGTCCAGGCTGTCTCAAACTTTACAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAAAAGGGGACTGACAATGTCCAGGCTGTCTCAAACTTTACAAAG  650

seq1  CCTAAGATGAATGTCTGTGCTGACTTCGTCTACCATTTATGTGATGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGATGAATGTCTGTGCTGACTTCGTCTACCATTTATGTGATGGATT  700

seq1  ACAGGTGTCTTGTGTAAGCATTAGGCACGTACTCTACCAACTGAGTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGTCTTGTGTAAGCATTAGGCACGTACTCTACCAACTGAGTTCCA  750

seq1  TCCTTGATTAGGAGAATTC  769
      |||||||||||||||||||
seq2  TCCTTGATTAGGAGAATTC  769

seq1: chr11_86310258_86311272
seq2: B6Ng01-017D18.g_66_1072

seq1  GAATTCCACATCGAGGAGAAAGGGAGAAAACAGCAACTTTCACTCAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATCGAGGAGAAAGGGAGAAAACAGCAACTTTCACTCAGGGG  50

seq1  AAGCCAGAACATTAGTCATCTCCAGCTGATTTCTGCAAGAAGAAAAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAACATTAGTCATCTCCAGCTGATTTCTGCAAGAAGAAAAGGTA  100

seq1  ATGGCGCACTTTACCTTTCCTTGTGTTTCCTCTGAAGAATCTGAAATCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGCACTTTACCTTTCCTTGTGTTTCCTCTGAAGAATCTGAAATCTT  150

seq1  TACCATGACTAAAGGGCTGCTACTGCGAAGGCTTCTTCGCATTTATCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGACTAAAGGGCTGCTACTGCGAAGGCTTCTTCGCATTTATCATC  200

seq1  AGTAACAAGGAGAAGTTGAGACAAAAACAAATTAGCCGTGTAAGACAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAAGGAGAAGTTGAGACAAAAACAAATTAGCCGTGTAAGACAGAC  250

seq1  TAAGCTGGGTTCTAGAGATGGCTTTAGCAGATTAGAACATGTGCTGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGGGTTCTAGAGATGGCTTTAGCAGATTAGAACATGTGCTGCAGT  300

seq1  TCCAGGACCAGAGTTTATGCTGAATGCTGGGATTAAAGTCGTGTGCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACCAGAGTTTATGCTGAATGCTGGGATTAAAGTCGTGTGCTACC  350

seq1  ACCACCACCACCACCACCTGACTAAAGTTAAACTTTAAAGACAGACTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACCACCACCACCTGACTAAAGTTAAACTTTAAAGACAGACTAAA  400

seq1  CCAGTACATGGCTTAATAAGGATAGTGACCAAGTGTCATGGGTGAAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACATGGCTTAATAAGGATAGTGACCAAGTGTCATGGGTGAAATCA  450

seq1  TGTCTGTACAGCTGCTACCTAGATTGACAGAGGTACAGGAAGACTGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTACAGCTGCTACCTAGATTGACAGAGGTACAGGAAGACTGTGAT  500

seq1  ACCCTCAACCAGATAAACACCACATCACTTTTTGTTTTAAATGAGTATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAACCAGATAAACACCACATCACTTTTTGTTTTAAATGAGTATTC  550

seq1  ACTCTATATTTGTGTATATTGTATGTGTCCACACACACATAGAGTCTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATATTTGTGTATATTGTATGTGTCCACACACACATAGAGTCTATT  600

seq1  ATACACACACACACACCTTGCCTAATGAGAATCACTGCTAAGTATATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACACCTTGCCTAATGAGAATCACTGCTAAGTATATTAA  650

seq1  ATCACCTTCCTGGCTTTGTGGTGAAGCTTAGTTGTTAGATATACAAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTTCCTGGCTTTGTGGTGAAGCTTAGTTGTTAGATATACAAGGGA  700

seq1  TGAAGGAGAGAAAGTGATTTGTGATTAAAATTTCACTGTGAAAGTCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGAGAAAGTGATTTGTGATTAAAATTTCACTGTGAAAGTCAGCT  750

seq1  GAAATGACTTCCTGTTTAAAACTATTACATTCATCCCTCTTAACACTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACTTCCTGTTTAAAACTATTACATTCATCCCTCTTAACACTTAT  800

seq1  CACAG-TTTCTCCAGGCAACTTGTTTTTTTAATATGATTAAATAACAAAG  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTTCTCCAGGCAACTTGTTTTTTTAATATGATTAAATAACAAAG  850

seq1  GGAGTTTGTAGAAGACTGAGGTGGGTGGATTTTTTCACAAGGCTATCACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTGTAGAAGACTGAGGTGGGTGGATTTTTTCACAAGGCTATCACT  900

seq1  TAAAATTAGGAAAAGGGAAGTAACTCATAGCAAATATTTTAACCCCAGCA  949
      ||||| |||| |||||||||||||| |||||||||||||| |||||||||
seq2  TAAAA-TAGG-AAAGGGAAGTAACTTATAGCAAATATTTT-ACCCCAGCA  947

seq1  ATTAAAGGCAGAAGCGGGTGAATCTGAGTTTGATGCCCATCTAGTCTCCA  999
      |||||| |||||||||||||||| |||| |||||| ||||||||||| ||
seq2  ATTAAA-GCAGAAGCGGGTGAAT-TGAG-TTGATG-CCATCTAGTCT-CA  992

seq1  GAGCAAGTTCCAGGAC  1015
      |||| |||||||||||
seq2  GAGC-AGTTCCAGGAC  1007