BAC Information

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BAC

Clone NameB6Ng01-017J05
Chromosome11 (Build37)
Map Location 50,541,879 - 50,569,910
singlet/doubletdoublet
Overlap geneAdamts2
Upstream geneLOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1
Downstream geneZfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017J05.bB6Ng01-017J05.g
ACCDH851222DH851223
length679971
definitionDH851222|Mus musculus domesticus DNA, BAC clone: B6Ng01-017J05, 5' end.DH851223|Mus musculus domesticus DNA, BAC clone: B6Ng01-017J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,569,235 - 50,569,910)(50,541,879 - 50,542,843)
sequence
gaattcactcgccgccatctcccactgaagcatggagctccttccagaag
gaatgagagctgttgtcagagcagaagccactcctggctgttgctgctcg
gtgggaaatgttacccgtgcacgtgctacaatccacacttgtatcccaca
accccgcacccatgcattcaatcaacccaggtcaaaattatttggagaaa
agttggcagaaaatgtatagactccccccccccccttctaagcaatagaa
cggcacttgtgtgttatgaagcactgtaagtaatatagattacttgatgt
atgtgggagagtgtgtgtaggttaaacccaaatgacacacatattacccc
agcgatctggatacttgagagggtcctgcaccagagctctgtggatgctg
aaggattctgcaggatgctgcagttgaagatgtggaccatttggaccatg
attaactctactttcatcccattagtgagagcagttatcatcactaggtc
tcttgccccacccacttaccttgttccatgtcatgcctgtcattgtcttc
ttttcacatttttgagtactattttatttttgtgtactttttaaaaatat
attattctgggtcatgtccgaagccgggtggtggtgcacgccttttaatc
ccagcacttgggaggcagaagcaggagtc
gaattccagaactaagcaggttctggaatttgctagagtctaatgattct
tatgagatcatgtaatgcttaatagattaatttggatgagcattacttcc
aatacaacagcgcttcattctcctctccatttatcgtggactctttttat
ttatttatttatttatttatttatttatttatttatttatttatttttga
gagtgttaaagtgtattaccttttgcttggtttttcacctttatcatttt
tatttatttattccttggcattataatggttgtacactttggttaacagg
ctcccctcccccaacccaatttttttagctggttgttgctctgaacaggt
aggttactgactgctgcgtgcccatttcctgtaaaattaaatatgtctat
tccttgtgggttgggaaacactttcccatagaagcttctagaccttcctt
tggccatctttttccagcttcttctagttatctctttattcagattctat
acttcagccaactgttggaatttataccttctactgagtctgctttttag
aactaaatgtcttgaggccttcctttttgctgtaattcccagcttttgtt
tcaatgttagtcatcacagacacagtcttagttgttgttttctttgtatc
tcagcatcttccacacatgcatgaaaaggccaactcttgtttttttggtg
gtttgaacactagattgtcttatgaatttgaaccctttatgcccatcctt
agtgttttgctctaactcacgtgttgttttctggaataagtgtgtgactg
ttcacacacaactgggccttcaccttcacctcccacccacttggtacact
gggttttctctcacatctcctgcaggccctatttggcttcagccgcccct
tccccttgaatacctctgatttaatggtatctcatgaatgggcattaaga
tgcctcattcttttttgttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50569235_50569910
seq2: B6Ng01-017J05.b_44_722 (reverse)

seq1  GACTCCTGCTTCTGCCTCCCAAGTGCTGGGATT-AAAGGCGTGCACCACC  49
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GACTCCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAAGGCGTGCACCACC  50

seq1  ACCCGGCTTCGGACATGACCCAGAATAATATATTTTTAAAAAGTACACAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGCTTCGGACATGACCCAGAATAATATATTTTTAAAAAGTACACAA  100

seq1  AAATAAAATAGTACTC-AAAATGTG-AAAGAAGACAATGACAGGCATGAC  147
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  AAATAAAATAGTACTCAAAAATGTGAAAAGAAGACAATGACAGGCATGAC  150

seq1  ATGGAACAAGGTAAGTGGGTGGGGCAAGAGACCTAGTGATGATAACTGCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACAAGGTAAGTGGGTGGGGCAAGAGACCTAGTGATGATAACTGCT  200

seq1  CTCACTAATGGGATGAAAGTAGAGTTAATCATGGTCCAAATGGTCCACAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAATGGGATGAAAGTAGAGTTAATCATGGTCCAAATGGTCCACAT  250

seq1  CTTCAACTGCAGCATCCTGCAGAATCCTTCAGCATCCACAGAGCTCTGGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTGCAGCATCCTGCAGAATCCTTCAGCATCCACAGAGCTCTGGT  300

seq1  GCAGGACCCTCTCAAGTATCCAGATCGCTGGGGTAATATGTGTGTCATTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACCCTCTCAAGTATCCAGATCGCTGGGGTAATATGTGTGTCATTT  350

seq1  GGGTTTAACCTACACACACTCTCCCACATACATCAAGTAATCTATATTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAACCTACACACACTCTCCCACATACATCAAGTAATCTATATTAC  400

seq1  TTACAGTGCTTCATAACACACAAGTGCCGTTCTATTGCTTAGAAGGGGGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGCTTCATAACACACAAGTGCCGTTCTATTGCTTAGAAGGGGGG  450

seq1  GGGGGGAGTCTATACATTTTCTGCCAACTTTTCTCCAAATAATTTTGACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAGTCTATACATTTTCTGCCAACTTTTCTCCAAATAATTTTGACC  500

seq1  TGGGTTGATTGAATGCATGGGTGCGGGGTTGTGGGATACAAGTGTGGATT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGATTGAATGCATGGGTGCGGGGTTGTGGGATACAAGTGTGGATT  550

seq1  GTAGCACGTGCACGGGTAACATTTCCCACCGAGCAGCAACAGCCAGGAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACGTGCACGGGTAACATTTCCCACCGAGCAGCAACAGCCAGGAGT  600

seq1  GGCTTCTGCTCTGACAACAGCTCTCATTCCTTCTGGAAGGAGCTCCATGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGCTCTGACAACAGCTCTCATTCCTTCTGGAAGGAGCTCCATGC  650

seq1  TTCAGTGGGAGATGGCGGCGAGTGAATTC  676
      |||||||||||||||||||||||||||||
seq2  TTCAGTGGGAGATGGCGGCGAGTGAATTC  679

seq1: chr11_50541879_50542843
seq2: B6Ng01-017J05.g_67_1037

seq1  GAATTCCAGAACTAAGCAGGTTCTGGAATTTGCTAGAGTCTAATGATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACTAAGCAGGTTCTGGAATTTGCTAGAGTCTAATGATTCT  50

seq1  TATGAGATCATGTAATGCTTAATAGATTAATTTGGATGAGCATTACTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATCATGTAATGCTTAATAGATTAATTTGGATGAGCATTACTTCC  100

seq1  AATACAACAGCGCTTCATTCTCCTCTCCATTTATCGTGGACTCTTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAACAGCGCTTCATTCTCCTCTCCATTTATCGTGGACTCTTTTTAT  150

seq1  TTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTGA  200

seq1  GAGTGTTAAAGTGTATTACCTTTTGCTTGGTTTTTCACCTTTATCATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTAAAGTGTATTACCTTTTGCTTGGTTTTTCACCTTTATCATTTT  250

seq1  TATTTATTTATTCCTTGGCATTATAATGGTTGTACACTTTGGTTAACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTCCTTGGCATTATAATGGTTGTACACTTTGGTTAACAGG  300

seq1  CTCCCCTCCCCCAACCCAATTTTTTTAGCTGGTTGTTGCTCTGAACAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCCCCCAACCCAATTTTTTTAGCTGGTTGTTGCTCTGAACAGGT  350

seq1  AGGTTACTGACTGCTGCGTGCCCATTTCCTGTAAAATTAAATATGTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACTGACTGCTGCGTGCCCATTTCCTGTAAAATTAAATATGTCTAT  400

seq1  TCCTTGTGGGTTGGGAAACACTTTCCCATAGAAGCTTCTAGACCTTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTGGGTTGGGAAACACTTTCCCATAGAAGCTTCTAGACCTTCCTT  450

seq1  TGGCCATCTTTTTCCAGCTTCTTCTAGTTATCTCTTTATTCAGATTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATCTTTTTCCAGCTTCTTCTAGTTATCTCTTTATTCAGATTCTAT  500

seq1  ACTTCAGCCAACTGTTGGAATTTATACCTTCTACTGAGTCTGCTTTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGCCAACTGTTGGAATTTATACCTTCTACTGAGTCTGCTTTTTAG  550

seq1  AACTAAATGTCTTGAGGCCTTCCTTTTTGCTGTAATTCCCAGCTTTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATGTCTTGAGGCCTTCCTTTTTGCTGTAATTCCCAGCTTTTGTT  600

seq1  TCAATGTTAGTCATCACAGACACAGTCTTAGTTGTTGTTTTCTTTGTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTAGTCATCACAGACACAGTCTTAGTTGTTGTTTTCTTTGTATC  650

seq1  TCAGCATCTTCCACACATGCATGAAAAGGCCAACTCTTG-TTTTTTGGTG  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCAGCATCTTCCACACATGCATGAAAAGGCCAACTCTTGTTTTTTTGGTG  700

seq1  GTTTGAACACTAGATTGTCTTATGAATTTGAACCCTTTATGCCCATCCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAACACTAGATTGTCTTATGAATTTGAACCCTTTATGCCCATCCTT  750

seq1  AGTG-TTTGCTCTAACTCACGTGTTGTTTTCTGGAATAAGTGTGTGACTG  798
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTGCTCTAACTCACGTGTTGTTTTCTGGAATAAGTGTGTGACTG  800

seq1  TTCACACACAACT-GGCCTTCACCTTCACCTCCCACCCACTTGGTACACT  847
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCACACACAACTGGGCCTTCACCTTCACCTCCCACCCACTTGGTACACT  850

seq1  GGGTTTTCTCTCACATCTCCTGCAGGCCCTATTT-GCCTCAGCCGCCCC-  895
      |||||||||||||||||||||||||||||||||| || ||||||||||| 
seq2  GGGTTTTCTCTCACATCTCCTGCAGGCCCTATTTGGCTTCAGCCGCCCCT  900

seq1  TCCCCTTGAATACCTCTGATTTTATTGTATCTCATGAAT-GGCATTAAGA  944
      |||||||||||||||||||||| || ||||||||||||| ||||||||||
seq2  TCCCCTTGAATACCTCTGATTTAATGGTATCTCATGAATGGGCATTAAGA  950

seq1  TGCCTCATTTCTTTTTGTTGC  965
      |||||||||  ||||||||||
seq2  TGCCTCATTCTTTTTTGTTGC  971