BAC Information

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BAC

Clone NameB6Ng01-017K17
Chromosome11 (Build37)
Map Location 61,087,699 - 61,254,707
singlet/doubletdoublet
Overlap gene4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150
Upstream geneTom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2
Downstream geneZfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017K17.bB6Ng01-017K17.g
ACCDH851284DH851285
length1,1001,012
definitionDH851284|Mus musculus domesticus DNA, BAC clone: B6Ng01-017K17, 5' end.DH851285|Mus musculus domesticus DNA, BAC clone: B6Ng01-017K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,087,699 - 61,088,803)(61,253,695 - 61,254,707)
sequence
gaattctctgaacatctgatgctaccatctctagctaactcaaactgcat
gtctaggccagtaccatgatgtataaacataaactggccagtatggactc
ctgtgccctatgtgtgggaagtggaaggagtctgggcagagcctctctcc
agctgaaagtcaagaatgtcagcaccgtcaacattctccgtgatgattgc
caacagagagatgattctcaccgcacataagggagaacgttaaaagagca
aggaatcagctagggcctaaacctatatggcctttcaatatgagtaaaca
tttgtttacagtttaaaaacaaaccacttaacttgctgtgcagcctttac
catattggctataaaacatcaagagccaccacataatctcatttaccaaa
aagaaaagtttccatagcaaccctctgataagtaataccagaagtcaccc
caaagcagtataatactgctactgtaaaggcaattgcagactgatgtgtg
agtttgatcctggagcccacaaggtaggagagaactgattcctgtaagct
attgacctctacctacagcactcacacacacacacacacacacacacaca
cacacacacacatgaatatttaaaaactaaggtagttgcaactattttta
aactagcccacatccatgctttcatgtgtgtcttgttttcttgctgaaca
cctcatatttaatcttcatatttaaaatctatgttgacaatgtcgtttag
taaaatcctactctactccacactggctaatcctgaaattctcttctatg
gagaaataaagagactggctttacgtaagtcagaagtctcaggattaagg
gctctcctccgacgatccgctgtgtggcttttgacctgaccgtggcctag
agaaatggacgaaatgacacagaattactgtgtggataactcttcgccag
tctaaaagcatttgttgagtataacatatttaactagcaaagcttaagca
ttgtttgaatagacgatagcactccacgagaaaggggaacaggctggggt
atctcctcattcgcagtgctaggacttctgagccaaaaggacggtgttca

gaattctggatactgcggaccctgaggccttgagtggctttattttcaga
ggcatttttgttctcatcaaagatgccaaccaatcagctgtctgtaggtg
gagaatgcagaagagggaaagctgaaagttcttgggggcaagtttaggaa
atctttgcaaaagccacggtgaatgtgacattcatcggggtctgagagtc
ctgggccagctgctgcaaagatagcagagtgcttcaccatgaatcccatg
ggctcaagcattgtggcagaacacactcagcacagatatcttacattctt
ttaccctaagatgttttaaatcaattggtgctttgcttcaaggtttagta
gaaaaacattcaggttggaatctcaaaagcatttataattcttcagattt
aaatattagcaatcacttctagttcttgatgagttctcagtagagccagg
tttttttttttttttttttttttttttgtccttggctggttgagtctatt
tgtggtgactgtcatactccatttcagaccttggcttcttgtcttgactc
atgcgccatgctagtgaacagtgctgctgagctccgatgcccttcatggt
gctggcatctgggatggcctcctattgcgttcatgagcatcatgtggctt
ctgtcccaggtcccggcttctgtgttggtgatgaggagaagtgccccact
tcactgttctcattcctgtggtgaggtggctggcagaaacaccctaataa
aaggaatggtttaatgtgggcttccagtttcagtctgtccctgtggggag
gcagagagtccatggtggcttgtattagggggcagaagtgtgtcaccagt
tggcagatcaggagcagagcttgggatcttgaagtatagccaggctatca
tcttacatctcatttcatgcaactaaggtgacctcactctacagccatgt
cttcttccccttgggggtcctaaaccctctaaacggcacagcttgtaggc
atgccctgctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61087699_61088803
seq2: B6Ng01-017K17.b_48_1147

seq1  GAATTCTCTGAACATCTGATGCTACCATCTCTAGCTAACTCAAACTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAACATCTGATGCTACCATCTCTAGCTAACTCAAACTGCAT  50

seq1  GTCTAGGCCAGTACCATGATGTATAAACATAAACTGGCCAGTATGGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGCCAGTACCATGATGTATAAACATAAACTGGCCAGTATGGACTC  100

seq1  CTGTGCCCTATGTGTGGGAAGTGGAAGGAGTCTGGGCAGAGCCTCTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCCTATGTGTGGGAAGTGGAAGGAGTCTGGGCAGAGCCTCTCTCC  150

seq1  AGCTGAAAGTCAAGAATGTCAGCACCGTCAACATTCTCCGTGATGATTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAAGTCAAGAATGTCAGCACCGTCAACATTCTCCGTGATGATTGC  200

seq1  CAACAGAGAGATGATTCTCACCGCACATAAGGGAGAACGTTAAAAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGAGAGATGATTCTCACCGCACATAAGGGAGAACGTTAAAAGAGCA  250

seq1  AGGAATCAGCTAGGGCCTAAACCTATATGGCCTTTCAATATGAGTAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCAGCTAGGGCCTAAACCTATATGGCCTTTCAATATGAGTAAACA  300

seq1  TTTGTTTACAGTTTAAAAACAAACCACTTAACTTGCTGTGCAGCCTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTACAGTTTAAAAACAAACCACTTAACTTGCTGTGCAGCCTTTAC  350

seq1  CATATTGGCTATAAAACATCAAGAGCCACCACATAATCTCATTTACCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGGCTATAAAACATCAAGAGCCACCACATAATCTCATTTACCAAA  400

seq1  AAGAAAAGTTTCCATAGCAACCCTCTGATAAGTAATACCAGAAGTCACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGTTTCCATAGCAACCCTCTGATAAGTAATACCAGAAGTCACCC  450

seq1  CAAAGCAGTATAATACTGCTACTGTAAAGGCAATTGCAGACTGATGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGTATAATACTGCTACTGTAAAGGCAATTGCAGACTGATGTGTG  500

seq1  AGTTTGATCCTGGAGCCCACAAGGTAGGAGAGAACTGATTCCTGTAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATCCTGGAGCCCACAAGGTAGGAGAGAACTGATTCCTGTAAGCT  550

seq1  ATTGACCTCTACCTACAGCACTCACACACACACACACACACACACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCTCTACCTACAGCACTCACACACACACACACACACACACACACA  600

seq1  CACACACACACATGAATATTTAAAAACTAAGGTAGTTGCAACTATTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATGAATATTTAAAAACTAAGGTAGTTGCAACTATTTTTA  650

seq1  AACTAGCCCACATCCATGCTTTCATGTGTGTCTTGTTTTCTTGCTGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCCCACATCCATGCTTTCATGTGTGTCTTGTTTTCTTGCTGAACA  700

seq1  CCTCATATTTAATCTTCATATTTAAAATCTATGTTGACAATGTCGTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATATTTAATCTTCATATTTAAAATCTATGTTGACAATGTCGTTTAG  750

seq1  TAAAATCCTACTCTACTCCACACTGGCTAATCCTGAAATTCTCTTCTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCTACTCTACTCCACACTGGCTAATCCTGAAATTCTCTTCTATG  800

seq1  GAGAAATAAAGAGACTGGCTTTACGTAAGTCAGAAGTCTCAGGATTAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATAAAGAGACTGGCTTTACGTAAGTCAGAAGTCTCAGGATTAAGG  850

seq1  GCTCTCCTCCGACGATCCGCTGTGTGGCTTTTGACCTGACCGTGGCCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTCCGACGATCCGCTGTGTGGCTTTTGACCTGACCGTGGCCTAG  900

seq1  AGAAATGGACGAAATGACACAGAATTACTGTGTTGATTACTCTTCGCCAG  950
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  AGAAATGGACGAAATGACACAGAATTACTGTGTGGATAACTCTTCGCCAG  950

seq1  TCTAAAAGCATTTGTTGAGTTAATAACAATATTTAACTAGCAAAGCTTAA  1000
      ||||||||||||||||||||  ||||| ||||||||||||||||||||||
seq2  TCTAAAAGCATTTGTTGAGT--ATAAC-ATATTTAACTAGCAAAGCTTAA  997

seq1  GCATGTTTGGAATAGACGATAGCACTCCACGAGGAAAGGGGAGCAGGGCT  1050
      ||||  || ||||||||||||||||||||||| ||||||||| || ||||
seq2  GCATTGTTTGAATAGACGATAGCACTCCACGA-GAAAGGGGAACA-GGCT  1045

seq1  GGGGGTTATCT-CTCAGTCGCAGTGC-AGGACCTCTGAAGCAGAAGGACG  1098
      ||||  ||||| |||| ||||||||| ||||| |||||  || |||||||
seq2  GGGG--TATCTCCTCATTCGCAGTGCTAGGACTTCTGAGCCAAAAGGACG  1093

seq1  GTGTTCA  1105
      |||||||
seq2  GTGTTCA  1100

seq1: chr11_61253695_61254707
seq2: B6Ng01-017K17.g_69_1079 (reverse)

seq1  TAGCTGGGCATGCCTTACAGCTGTGCCGTTTGAGGGGTTCTAGGACCCCC  50
      |||| ||||||||||   ||||||||||||| || || | ||||||||||
seq2  TAGCAGGGCATGCCTACAAGCTGTGCCGTTT-AGAGGGTTTAGGACCCCC  49

seq1  CAGGGGGGAAGAAGACATGGCTGGTAGAAGTGA-GTCA-CTTAGTTGCAT  98
       |  |||||||||||||||||| |||| ||||| |||| |||||||||||
seq2  AA--GGGGAAGAAGACATGGCT-GTAG-AGTGAGGTCACCTTAGTTGCAT  95

seq1  GGAAGTGAGATGTTAAGGATGATAGCCTGGCTATACTTC-AGATCCC-AG  146
       ||| ||||||||  | |||||||||||||||||||||| ||||||| ||
seq2  -GAAATGAGATGT--AAGATGATAGCCTGGCTATACTTCAAGATCCCAAG  142

seq1  CTCTGCTTCCTGATCTGCCAACCTGTGACACACCTCTGCCCCTTACTAC-  195
      |||||| |||||||||||||||  ||||||||| |||||||| || ||| 
seq2  CTCTGC-TCCTGATCTGCCAACTGGTGACACACTTCTGCCCCCTAATACA  191

seq1  AGCCACCATGGACTCTCTGCCTCCCCACAGGGACAGACTGAAACTGGGAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGCCACCATGGACTCTCTGCCTCCCCACAGGGACAGACTGAAACTGGAAG  241

seq1  CCCACA-TAAACCATTCC-TTTATTAGGGTGTTTCTGCCAGCCACCTCAC  293
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCACATTAAACCATTCCTTTTATTAGGGTGTTTCTGCCAGCCACCTCAC  291

seq1  CACAGGAATGAGAACAGTGAAGTGGGGCACTTCTCCTCATCACCAACACA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAATGAGAACAGTGAAGTGGGGCACTTCTCCTCATCACCAACACA  341

seq1  GAAGCCGGGACCTGGGACAGAAGCCACATGATGCTCATGAACGCAATAGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCGGGACCTGGGACAGAAGCCACATGATGCTCATGAACGCAATAGG  391

seq1  AGGCCATCCCAGATGCCAGCACCATGAAGGGCATCGGAGCTCAGCAGCAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATCCCAGATGCCAGCACCATGAAGGGCATCGGAGCTCAGCAGCAC  441

seq1  TGTTCACTAGCATGGCGCATGAGTCAAGACAAGAAGCCAAGGTCTGAAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACTAGCATGGCGCATGAGTCAAGACAAGAAGCCAAGGTCTGAAAT  491

seq1  GGAGTATGACAGTCACCACAAATAGACTCAACCAGCCAAGGACAAAAAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATGACAGTCACCACAAATAGACTCAACCAGCCAAGGACAAAAAAA  541

seq1  AAAAAAAAAAAAAAAAAAAACCTGGCTCTACTGAGAACTCATCAAGAACT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAACCTGGCTCTACTGAGAACTCATCAAGAACT  591

seq1  AGAAGTGATTGCTAATATTTAAATCTGAAGAATTATAAATGCTTTTGAGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGATTGCTAATATTTAAATCTGAAGAATTATAAATGCTTTTGAGA  641

seq1  TTCCAACCTGAATGTTTTTCTACTAAACCTTGAAGCAAAGCACCAATTGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACCTGAATGTTTTTCTACTAAACCTTGAAGCAAAGCACCAATTGA  691

seq1  TTTAAAACATCTTAGGGTAAAAGAATGTAAGATATCTGTGCTGAGTGTGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACATCTTAGGGTAAAAGAATGTAAGATATCTGTGCTGAGTGTGT  741

seq1  TCTGCCACAATGCTTGAGCCCATGGGATTCATGGTGAAGCACTCTGCTAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACAATGCTTGAGCCCATGGGATTCATGGTGAAGCACTCTGCTAT  791

seq1  CTTTGCAGCAGCTGGCCCAGGACTCTCAGACCCCGATGAATGTCACATTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAGCAGCTGGCCCAGGACTCTCAGACCCCGATGAATGTCACATTC  841

seq1  ACCGTGGCTTTTGCAAAGATTTCCTAAACTTGCCCCCAAGAACTTTCAGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGGCTTTTGCAAAGATTTCCTAAACTTGCCCCCAAGAACTTTCAGC  891

seq1  TTTCCCTCTTCTGCATTCTCCACCTACAGACAGCTGATTGGTTGGCATCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCTTCTGCATTCTCCACCTACAGACAGCTGATTGGTTGGCATCT  941

seq1  TTGATGAGAACAAAAATGCCTCTGAAAATAAAGCCACTCAAGGCCTCAGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAGAACAAAAATGCCTCTGAAAATAAAGCCACTCAAGGCCTCAGG  991

seq1  GTCCGCAGTATCCAGAATTC  1013
      ||||||||||||||||||||
seq2  GTCCGCAGTATCCAGAATTC  1011