BAC Information

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BAC

Clone NameB6Ng01-018L05
Chromosome11 (Build37)
Map Location 86,687,988 - 86,800,594
singlet/doubletdoublet
Overlap geneYpel2
Upstream geneTbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40
Downstream geneGdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018L05.bB6Ng01-018L05.g
ACCDH852027DH852028
length944641
definitionDH852027|Mus musculus domesticus DNA, BAC clone: B6Ng01-018L05, 5' end.DH852028|Mus musculus domesticus DNA, BAC clone: B6Ng01-018L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,687,988 - 86,688,947)(86,799,954 - 86,800,594)
sequence
gaattcaccagtcttctacctttggtttctgactgctgggattgtaggtg
tatgccatcattcctggcctggcttgattcttaaatatcaagccttcttg
aatttctccctactgaactccgtcacagggagcccttgatattctgggct
gtgccttttatcccagcatgaggcttgcccagttacatgctccccatcag
ggatgtatttccatctttagctcccaccccctcccagactgtaggccccc
actttttaaaagctgttctgctactgtgacttgaccccagggcttgatat
atgctggacaagtactcagacgctgagctacatccccagccgtccgtatc
cctgtcctaacacactgttctgcaagcctgagcagactgtctccgagtgg
agcgtgctcttctcggaacaggctttgcctggctgcgtggagctagtctg
ggtgcttgtcttgctgtgcgctaacctttgtagatagtggagcaagccat
gctccatcctcagggaaaccagtggtgctggaagctcacagaagtggggc
caagaaacctgcacttagatgcatgtaggcaaagggacgctgcataactc
aggtaagcagagttacagtgcaacctggtggaggtaaggggggttactct
tgccacagaaaagcctgcgggtgagtccaaccctagagagacgcacggac
agtctgggtggttaggaacctggaattgccctctaaacctcgatttctgc
tccataaaatgaaacatataaggaaatttatttggagactttttgagagc
actgaatgaatactatatatgggccttagcctcttgctgggtacaaatat
acgatggttctttctcccctgaggactgctttgggacatgctacctttat
ggtccacaagcaaccgataaatttggtaactggggaaatgataa
gaattcttttagaacatagtgccaggaaaagctttggcccttcagaggga
ctggtatgcctttttttttctttctttttttgggacaattggaaatttat
aactgctcatatttctctttttgctatggttgccaaggaagtacagagcc
aaaactgtggcttgctccacagaggtctgcatcctaatttttttcccagt
gttaaccttattttttgttttttgtttttgtttgtttgtttttttttgtt
tcatatgaataacttgtaactttagatatgagctggatatgtgctgggtt
gggaattgagttcagttaggtaatttcattttagaaatataaaggtataa
gaaatataaagagctgggcatggtggcacacgcctttaatcccagcactt
gggaggcagaggcaggcggatttctgagttcgaggctagcctgatctaca
aagtgagttccaggacagccagggctatactgagaaccctgtctcgaaaa
aacaaaaacaaaaacaaaaaaaaaaaaaaaaaataagaaaaaaaaaagat
agaaatttaaagaaatgtaaggcttaagtgggcagaaaacacacagctct
aattaggtaaagcagaagtcagtggggtaggggtggaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_86687988_86688947
seq2: B6Ng01-018L05.b_44_987

seq1  GAATTCACCAGTCTTCTACCTTTGGTTTCTGACTGCTGGGATTGTAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGTCTTCTACCTTTGGTTTCTGACTGCTGGGATTGTAGGTG  50

seq1  TATGCCATCATTCCTGGCCTGGCTTGATTCTTAAATATCAAGCCTTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCATCATTCCTGGCCTGGCTTGATTCTTAAATATCAAGCCTTCTTG  100

seq1  AATTTCTCCCTACTGAACTCCGTCACAGGGAGCCCTTGATATTCTGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCCCTACTGAACTCCGTCACAGGGAGCCCTTGATATTCTGGGCT  150

seq1  GTGCCTTTTATCCCAGCATGAGGCTTGCCCAGTTACATGCTCCCCATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTTTATCCCAGCATGAGGCTTGCCCAGTTACATGCTCCCCATCAG  200

seq1  GGATGTATTTCCATCTTTAGCTCCCACCCCCTCCCAGACTGTAGGCCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTATTTCCATCTTTAGCTCCCACCCCCTCCCAGACTGTAGGCCCCC  250

seq1  ACTTTTTAAAAGCTGTTCTGCTACTGTGACTTGACCCCAGGGCTTGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAAAAGCTGTTCTGCTACTGTGACTTGACCCCAGGGCTTGATAT  300

seq1  ATGCTGGACAAGTACTCAGACGCTGAGCTACATCCCCAGCCGTCCGTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGACAAGTACTCAGACGCTGAGCTACATCCCCAGCCGTCCGTATC  350

seq1  CCTGTCCTAACACACTGTTCTGCAAGCCTGAGCAGACTGTCTCCGAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTAACACACTGTTCTGCAAGCCTGAGCAGACTGTCTCCGAGTGG  400

seq1  AGCGTGCTCTTCTCGGAACAGGCTTTGCCTGGCTGCGTGGAGCTAGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGCTCTTCTCGGAACAGGCTTTGCCTGGCTGCGTGGAGCTAGTCTG  450

seq1  GGTGCTTGTCTTGCTGTGCGCTAACCTTTGTAGATAGTGGAGCAAGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTGTCTTGCTGTGCGCTAACCTTTGTAGATAGTGGAGCAAGCCAT  500

seq1  GCTCCATCCTCAGGGAAACCAGTGGTGCTGGAAGCTCACAGAAGTGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATCCTCAGGGAAACCAGTGGTGCTGGAAGCTCACAGAAGTGGGGC  550

seq1  CAAGAAACCTGCACTTAGATGCATGTAGGCAAAGGGACGCTGCAGAACTC  600
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAAGAAACCTGCACTTAGATGCATGTAGGCAAAGGGACGCTGCATAACTC  600

seq1  AGGTAAGCAGAGTTACAGTGCAACCTGGTGGAGGTAAGGGGGGTTACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGCAGAGTTACAGTGCAACCTGGTGGAGGTAAGGGGGGTTACTCT  650

seq1  TGCCACAGAAAAGCCTGCGGGTGAGTCCAACCCTAGAGAGACGCAGGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGCCACAGAAAAGCCTGCGGGTGAGTCCAACCCTAGAGAGACGCACGGAC  700

seq1  AGTCTGGGTGGTTAGGAACCTGGAATTTGCCCTCTAAACCTCGACTTCTG  750
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  AGTCTGGGTGGTTAGGAACCTGGAA-TTGCCCTCTAAACCTCGATTTCTG  749

seq1  CATCCATAAAATGAAACATATAAGGAAATTTATTTGGAGACATTTTTGAG  800
      | ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  C-TCCATAAAATGAAACATATAAGGAAATTTATTTGGAGAC-TTTTTGAG  797

seq1  AGCACTGAATGAATACTAGCATAT-GGCCTTAGCCTCATGCCTGGTACAA  849
      ||||||||||||||||||  |||| |||||||||||| |||  |||||||
seq2  AGCACTGAATGAATACTA-TATATGGGCCTTAGCCTCTTGCTGGGTACAA  846

seq1  ATAATACATTGGTTTCTTTCTCCCCATGAGGACTGCTTTTGGTACATGCC  899
      || ||||  ||| |||||||||||| |||||||||| ||||| |||||| 
seq2  AT-ATACGATGG-TTCTTTCTCCCC-TGAGGACTGC-TTTGGGACATGCT  892

seq1  ACCTTTTACTGCTTCCACAAGCAAACCGATAAAAATTAGGTAAACTGTGG  949
      ||||||   ||  ||||||||| |||||||  ||||| |||||    |||
seq2  ACCTTT--ATG-GTCCACAAGC-AACCGAT--AAATTTGGTAA---CTGG  933

seq1  GGAAATGATAA  960
      |||||||||||
seq2  GGAAATGATAA  944

seq1: chr11_86799954_86800594
seq2: B6Ng01-018L05.g_68_708 (reverse)

seq1  TGCCTCCACCCCTA-CCCACTGACTTCTGCTTTACCTAATTAGAGCTGTG  49
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGCCTCCACCCCTACCCCACTGACTTCTGCTTTACCTAATTAGAGCTGTG  50

seq1  TGTTCTTCTGCCCACTTAAGCCTTACATTTCTTTATATTTCTTTCTTTTT  99
      |||| |||||||||||||||||||||||||||||| |||||| |||||||
seq2  TGTT-TTCTGCCCACTTAAGCCTTACATTTCTTTAAATTTCTATCTTTTT  99

seq1  TTTTTCTTTTTTTTTTTTTTTTTTTTTGTTTTTGTTTTTGTTTTTTCGAG  149
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTATTTTTTTTTTTTTTTTTTGTTTTTGTTTTTGTTTTTTCGAG  149

seq1  ACAGGGTTCTCCGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATC  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTCTCAGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATC  199

seq1  AGGCTAGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTG  249

seq1  GGATTAAAGGCGTGTGCCACCATGCCCAGCTCTTTATATTTCTTATACCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGCGTGTGCCACCATGCCCAGCTCTTTATATTTCTTATACCT  299

seq1  TTATATTTCTAAAATGAAATTACCTAACTGAACTCAATTCCCAACCCAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTCTAAAATGAAATTACCTAACTGAACTCAATTCCCAACCCAGC  349

seq1  ACATATCCAGCTCATATCTAAAGTTACAAGTTATTCATATGAAACAAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCCAGCTCATATCTAAAGTTACAAGTTATTCATATGAAACAAAAA  399

seq1  AAAACAAACAAACAAAAACAAAAAACAAAAAATAAGGTTAACACTGGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAACAAAAACAAAAAACAAAAAATAAGGTTAACACTGGGAA  449

seq1  AAAAATTAGGATGCAGACCTCTGTGGAGCAAGCCACAGTTTTGGCTCTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAGGATGCAGACCTCTGTGGAGCAAGCCACAGTTTTGGCTCTGT  499

seq1  ACTTCCTTGGCAACCATAGCAAAAAGAGAAATATGAGCAGTTATAAATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTGGCAACCATAGCAAAAAGAGAAATATGAGCAGTTATAAATTT  549

seq1  CCAATTGTCCCAAAAAAAGAAAGAAAAAAAAAGGCATACCAGTCCCTCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGTCCCAAAAAAAGAAAGAAAAAAAAAGGCATACCAGTCCCTCTG  599

seq1  AAGGGCCAAAGCTTTTCCTGGCACTATGTTCTAAAAGAATTC  641
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCAAAGCTTTTCCTGGCACTATGTTCTAAAAGAATTC  641