BAC Information

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BAC

Clone NameB6Ng01-019B22
Chromosome11 (Build37)
Map Location 33,178,266 - 33,310,808
singlet/doubletdoublet
Overlap geneRanbp17, Anp32c
Upstream geneHba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, LOC666258
Downstream geneLOC669306, LOC666269, Gabrp, D130052B06Rik, Kcnip1, Kcnmb1, Lcp2, Foxi1, Dock2, EG574403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019B22.bB6Ng01-019B22.g
ACCDH852306DH852307
length1,0931,121
definitionDH852306|Mus musculus domesticus DNA, BAC clone: B6Ng01-019B22, 5' end.DH852307|Mus musculus domesticus DNA, BAC clone: B6Ng01-019B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,309,699 - 33,310,808)(33,178,266 - 33,179,387)
sequence
gaattccagttctgctttctccaggcagcctgccttcccaagtttaaagt
cttcatctatgtgatgacacgccactttaatgtacattccacaattgtga
ttaatcgtaactgtaattgatgtagtgcctttctcacaaaaatatgggct
tcattttaaaatttttattttatttttcacattccatagtccattccctg
ttccccccatctaccctctgtctgctccacatcccacacctcctcccacc
ccaccacgtttccatgtggaggcccccacctcttaagggaaaaaaatgta
cctgtcccgttgaccatgctatttctggtattaagtagttgataaatatt
tgtaaaatgaaataggatattttatgtttcaattgtcaccaaattctata
cttcatagttctttagggagattaagttctttggaagaattaggtcagga
agaatggcgatgctgctgtttaccgagctcgcccttctctgtgctgcacg
tgctatctgattctagcccttacaacagcaccacagtggacttatttttc
atcaagaaaaaaaaaaaaaaaaacaaaccaggcactaagaggttatttca
cttgccccaaaatagcagagacatgatctaaacacaggctggtccttctg
ttaaggtcctaaagtcctaccactaggtgttgcagcctccttttcctaag
atcacatggaaaagaaagtattaaaacaaagaaacatgtttttaaatttt
gactgaattgtaaatgaatttataataacaacctgtgttcagccttgttt
gtgagaggtaatgtgtaggctctcatctagctaaatttaacttattttgc
aagttttattgctgctgatttgttctatatattatttagagttgacattt
taatattaatgtatttattacattagttacattcgttgaatgttcagaaa
acaggtaaaagcttttcaaatgttttgaccatagaggccagactgtctgt
ttctagatgatgagcccgtgaattgggaagaaaatagcatattccagcat
catagactcatggcactcagactaagatctagaatacatgttt
gaattcagtctctgaaggcttccaaggatccaggttagctgactctgtcc
tcattgggttcctcagtcttcttcccaactattctgtaagaagctccatc
taatgtttgggtgtgagtctctgcatctctgtccattagcttctgggtag
agcctcttagaggacagttatgctaagtttctgtctctgcagactgtcac
agacagagcagctggggtgacaggtggagccaactaggataggtggtggg
gcagggctccaagctggctagttttggggcccctgaaggtttccatgtgg
aggcaagatgctcttgggtcctgcaaggctcctttggatataggggcaag
gccagaggtagacaatggtgctaaggggactgtgcgtgcctgtgccactc
acagggaccatttcttatcccttcaaaagaaatgtgtctgctctgccctt
ggagtttgaatgagaaatctctttcaggtttcttgggcaccgtgaagcat
agtcatagcatgagctcagtggattcttcattagtcatccatctaaacat
cctgctggtctcaagctgtcttagggaagaatctgctttttctgtgttta
tcttttcaccccttataagttccagcatcacacagcacatgctcagcaaa
catttgccacatgatgaaagaagtcattagtgttcttgtgcaaaggaggt
ttagtctaacccctgtagtttctgagacaccatggagtagactttaagga
ctttctcttgataaattagctgtttacgaatgttggggtcttcgagggat
aatcatttttattgcctccacaagacttccggaacctttaccaactgcat
gtcaaccataatgcccagaccacgcccatggctctgggactgtgtgtttc
ttacaactattatttcctgttggcatcttacaagatctctaagtgtttca
ggacctctgcagtcttcatctattgtctgttatcatcgtcatataaatat
atgaccaaagcttctactcttattgtggcattcaggaattttttctaatg
gggaataccctttacaaacaaatctgcaactatgtagccgctaggcttct
ctttcccctttcttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_33309699_33310808
seq2: B6Ng01-019B22.b_42_1134 (reverse)

seq1  AAACATGTATTTCTAGATTTCCCTTAAGTCTGAGGTTGCCATTGAAGTCT  50
      ||||||||| ||||||||    ||| ||||||||  ||||||   |||||
seq2  AAACATGTA-TTCTAGAT----CTT-AGTCTGAG--TGCCAT--GAGTCT  40

seq1  ATGATGCCTGTGAAATATGCTATTTTCTTCCCATTTCACGGGCTCATCAT  100
      |||||||   || |||||||||||||||||||| ||||||||||||||||
seq2  ATGATGC---TGGAATATGCTATTTTCTTCCCAATTCACGGGCTCATCAT  87

seq1  CTAAGAAACAGACAGTCTGGCCTCTATGGTTCAAAACATTTTGAAAAGCT  150
      || |||||||||||||||||||||||||| |||||||| |||||||||| 
seq2  CT-AGAAACAGACAGTCTGGCCTCTATGG-TCAAAACA-TTTGAAAAGC-  133

seq1  TTTTACCTG-TTTCTGAACATTCAACGAATGTAACTAATGTTAATAAATA  199
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  TTTTACCTGTTTTCTGAACATTCAACGAATGTAACTAATG-TAATAAATA  182

seq1  CATTAATATTAAAATGTCAACTCTAAATAATATATAGAACAAATCAGCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATATTAAAATGTCAACTCTAAATAATATATAGAACAAATCAGCAG  232

seq1  CAATAAAACTTGCAAAATAAGTTAAATTTAGCTAGATGAGAGCCTACACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAACTTGCAAAATAAGTTAAATTTAGCTAGATGAGAGCCTACACA  282

seq1  TTACCTCTCACAAACAAGGCTGAACACAGGTTGTTATTATAAATTCATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCTCACAAACAAGGCTGAACACAGGTTGTTATTATAAATTCATTT  332

seq1  ACAATTCAGTCAAAATTTAAAAACATGTTTCTTTGTTTTAATACTTTCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCAGTCAAAATTTAAAAACATGTTTCTTTGTTTTAATACTTTCTT  382

seq1  TTCCATGTGATCTTAGGAAAAGGAGGCTGCAACACCTAGTGGTAGGACTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTGATCTTAGGAAAAGGAGGCTGCAACACCTAGTGGTAGGACTT  432

seq1  TAGGACCTTAACAGAAGGACCAGCCTGTGTTTAGATCATGTCTCTGCTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCTTAACAGAAGGACCAGCCTGTGTTTAGATCATGTCTCTGCTAT  482

seq1  TTTGGGGCAAGTGAAATAACCTCTTAGTGCCTGGTTTGTTTTTTTTTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGCAAGTGAAATAACCTCTTAGTGCCTGGTTTGTTTTTTTTTTTT  532

seq1  TTTTTCTTGATGAAAAATAAGTCCACTGTGGTGCTGTTGTAAGGGCTAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTGATGAAAAATAAGTCCACTGTGGTGCTGTTGTAAGGGCTAGA  582

seq1  ATCAGATAGCACGTGCAGCACAGAGAAGGGCGAGCTCGGTAAACAGCAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATAGCACGTGCAGCACAGAGAAGGGCGAGCTCGGTAAACAGCAGC  632

seq1  ATCGCCATTCTTCCTGACCTAATTCTTCCAAAGAACTTAATCTCCCTAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCATTCTTCCTGACCTAATTCTTCCAAAGAACTTAATCTCCCTAAA  682

seq1  GAACTATGAAGTATAGAATTTGGTGACAATTGAAACATAAAATATCCTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATGAAGTATAGAATTTGGTGACAATTGAAACATAAAATATCCTAT  732

seq1  TTCATTTTACAAATATTTATCAACTACTTAATACCAGAAATAGCATGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTACAAATATTTATCAACTACTTAATACCAGAAATAGCATGGTC  782

seq1  AACGGGACAGGTACATTTTTTTCCCTTAAGAGGTGGGGGCCTCCACATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGACAGGTACATTTTTTTCCCTTAAGAGGTGGGGGCCTCCACATGG  832

seq1  AAACGTGGTGGGGTGGGAGGAGGTGTGGGATGTGGAGCAGACAGAGGGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTGGTGGGGTGGGAGGAGGTGTGGGATGTGGAGCAGACAGAGGGTA  882

seq1  GATGGGGGGAACAGGGAATGGACTATGGAATGTGAAAAATAAAATAAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGGGAACAGGGAATGGACTATGGAATGTGAAAAATAAAATAAAAA  932

seq1  TTTTAAAATGAAGCCCATATTTTTGTGAGAAAGGCACTACATCAATTACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATGAAGCCCATATTTTTGTGAGAAAGGCACTACATCAATTACA  982

seq1  GTTACGATTAATCACAATTGTGGAATGTACATTAAAGTGGCGTGTCATCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACGATTAATCACAATTGTGGAATGTACATTAAAGTGGCGTGTCATCA  1032

seq1  CATAGATGAAGACTTTAAACTTGGGAAGGCAGGCTGCCTGGAGAAAGCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATGAAGACTTTAAACTTGGGAAGGCAGGCTGCCTGGAGAAAGCAG  1082

seq1  AACTGGAATTC  1110
      |||||||||||
seq2  AACTGGAATTC  1093

seq1: chr11_33178266_33179387
seq2: B6Ng01-019B22.g_66_1186

seq1  GAATTCAGTCTCTGAAGGCTTCCAAGGATCCAGGTTAGCTGACTCTGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTCTGAAGGCTTCCAAGGATCCAGGTTAGCTGACTCTGTCC  50

seq1  TCATTGGGTTCCTCAGTCTTCTTCCCAACTATTCTGTAAGAAGCTCCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGGTTCCTCAGTCTTCTTCCCAACTATTCTGTAAGAAGCTCCATC  100

seq1  TAATGTTTGGGTGTGAGTCTCTGCATCTCTGTCCATTAGCTTCTGGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTGGGTGTGAGTCTCTGCATCTCTGTCCATTAGCTTCTGGGTAG  150

seq1  AGCCTCTTAGAGGACAGTTATGCTAAGTTTCTGTCTCTGCAGACTGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTAGAGGACAGTTATGCTAAGTTTCTGTCTCTGCAGACTGTCAC  200

seq1  AGACAGAGCAGCTGGGGTGACAGGTGGAGCCAACTAGGATAGGTGGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGCAGCTGGGGTGACAGGTGGAGCCAACTAGGATAGGTGGTGGG  250

seq1  GCAGGGCTCCAAGCTGGCTAGTTTTGGGGCCCCTGAAGGTTTCCATGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCTCCAAGCTGGCTAGTTTTGGGGCCCCTGAAGGTTTCCATGTGG  300

seq1  AGGCAAGATGCTCTTGGGTCCTGCAAGGCTCCTTTGGATATAGGGGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGATGCTCTTGGGTCCTGCAAGGCTCCTTTGGATATAGGGGCAAG  350

seq1  GCCAGAGGTAGACAATGGTGCTAAGGGGACTGTGCGTGCCTGTGCCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGGTAGACAATGGTGCTAAGGGGACTGTGCGTGCCTGTGCCACTC  400

seq1  ACAGGGACCATTTCTTATCCCTTCAAAAGAAATGTGTCTGCTCTGCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACCATTTCTTATCCCTTCAAAAGAAATGTGTCTGCTCTGCCCTT  450

seq1  GGAGTTTGAATGAGAAATCTCTTTCAGGTTTCTTGGGCACCGTGAAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTGAATGAGAAATCTCTTTCAGGTTTCTTGGGCACCGTGAAGCAT  500

seq1  AGTCATAGCATGAGCTCAGTGGATTCTTCATTAGTCATCCATCTAAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAGCATGAGCTCAGTGGATTCTTCATTAGTCATCCATCTAAACAT  550

seq1  CCTGCTGGTCTCAAGCTGTCTTAGGGAAGAATCTGCTTTTTCTGTGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGTCTCAAGCTGTCTTAGGGAAGAATCTGCTTTTTCTGTGTTTA  600

seq1  TCTTTTCACCCCTTATAAGTTCCAGCATCACACAGCACATGCTCAGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCACCCCTTATAAGTTCCAGCATCACACAGCACATGCTCAGCAAA  650

seq1  CATTTGCCACATGATGAAAGAAGTCATTAGTGTTCTTGTGCAAAGGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCCACATGATGAAAGAAGTCATTAGTGTTCTTGTGCAAAGGAGGT  700

seq1  TTAGTCTAACCCCTGTAGTTTCTGAGACACCATGGAGTAGACTTTAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTAACCCCTGTAGTTTCTGAGACACCATGGAGTAGACTTTAAGGA  750

seq1  CTTTCTCTTGATAAATTAGCTG-TTACGAATGTTGGGGTCTTCGAGGGAT  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTTCTCTTGATAAATTAGCTGTTTACGAATGTTGGGGTCTTCGAGGGAT  800

seq1  AATCA-TTTTATTGCCTCCACAAGACTTCCGGAACCTTTACCAACTGCAT  848
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTTTATTGCCTCCACAAGACTTCCGGAACCTTTACCAACTGCAT  850

seq1  GTCAACCATAATGCCCAGACCACGCCCATGGCCCT-GGACTGTGTGTTTC  897
      |||||||||||||||||||||||||||||||| || ||||||||||||||
seq2  GTCAACCATAATGCCCAGACCACGCCCATGGCTCTGGGACTGTGTGTTTC  900

seq1  TTACAACTATTATTTCCTGTTGGCATCTTACAAGACCTCTAAGTGTTTCA  947
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTACAACTATTATTTCCTGTTGGCATCTTACAAGATCTCTAAGTGTTTCA  950

seq1  GGACCTCTGCAGTCTTCATCTATTGTCCTGTTATCATCTTCATATAAATA  997
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  GGACCTCTGCAGTCTTCATCTATTGT-CTGTTATCATCGTCATATAAATA  999

seq1  TATGACCAAAGCTTCTACTCCTAATGTGGCATTCCAGGAATTTTTCTTAA  1047
      |||||||||||||||||||| || ||||||||| |||||||||||  |||
seq2  TATGACCAAAGCTTCTACTCTTATTGTGGCATT-CAGGAATTTTTTCTAA  1048

seq1  TGGGAGATACCCTTCACAAACAAATACTGCAACTATGTAGTCAGCTAGGC  1097
      ||||  |||||||| |||||||||| |||||||||||||| | |||||||
seq2  TGGGGAATACCCTTTACAAACAAAT-CTGCAACTATGTAG-CCGCTAGGC  1096

seq1  CTCCTCTTCCCCCTTCTTTTTTTTT  1122
       ||   |||||| ||||||||||||
seq2  TTCTCTTTCCCCTTTCTTTTTTTTT  1121