BAC Information

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BAC

Clone NameB6Ng01-019D17
Chromosome11 (Build37)
Map Location 109,639,425 - 109,746,221
singlet/doubletdoublet
Overlap gene1700012B07Rik, 1700023C21Rik, LOC100041492
Upstream geneCcdc46, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169
Downstream geneAbca8b, Abca8a, Abca9, Abca6, Abca5, Map2k6, LOC100041523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019D17.bB6Ng01-019D17.g
ACCDH852384DH852385
length1,0761,097
definitionDH852384|Mus musculus domesticus DNA, BAC clone: B6Ng01-019D17, 5' end.DH852385|Mus musculus domesticus DNA, BAC clone: B6Ng01-019D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,639,425 - 109,640,512)(109,745,118 - 109,746,221)
sequence
gaattccttcttgctttatgaggatcagcactctgctagtcttggtggtg
gcagagacgccccataaaacctacctcctggtttccaggggttgagattc
tttgttctgatcactcttccatcctctggtgatacctacacacttcactt
gttccactgagaacagtagtaacttgatttctgggttgtctagaacttca
ggatcctgtgtttatgagaccagaatgaagactcttccatgtgggtaaaa
atctactgcaccttaatggattttattttaacccagatgcaggtggcctc
ctgcatctatctcctatctatctatctatctatctatctatctatctatc
tatctatctatctatgtatctatctatctatctatcatttatctatgtat
ccaccatctatctatgtttctctctttctttctttctttctttctttctt
tctttctttctttctttctttctttctttctttcttccttccttccttcc
ttccttccttcctccctccctcccttcctctctctctctctcttccttcc
ttcctctttcattccctccttcttttctttttttcattcttttctttttt
cctatgtgaacacacatagggcattttcctaaactttctgtcattgttaa
actctactgctatagttacatcaagagtgggcaggtgtatctggagagaa
agaccatcacgagacttgtgccatagacaacagaagagagccaaacatca
cagctcccaagagagtgtgggaagttcagggcaagtaggagcaaggccag
gttgggctgctgcacttcatggcagactggtcaaattatatctcttgccc
agagttctcattaaggtctgtgccttggagacattttggcctaccaagtg
catcattaagcagcctgggcataataacagtgattcagatgatttaaaag
agaagtctaattagagcacacattcatgtttcctcttgaagtctatccgg
taaggaagtcactgaagatcattagcaaataccagtggaggtgatggtgc
aagtcgtccatgagcaaagttaagaa
gaattccatagaggaaagctgtcctgataacttacgagtctctagaagaa
gagttggtgctagaacaactactgtctaactcatggctctagcaacacat
gcttgacactggacatcagacaacagcttcctgatttggaaaatgcaaaa
tcttcaagacgtgtctagacctttgccctgcacaaaaacagtaccagtca
agagagccttccattgacgaaataatgaagctggatcctcgaccttactt
gatatacggaagtgagctcaagagttcaaaaacttaaactggacagttga
agtgattaaaacccttaacagagaacatagttgtgagcctttggattttg
gattaaacaatgctttcttagtaaccacaagcatgagcaagaataaaacc
cagaagtgagagaattgtaagttcaagttcactctcagctctctagcaag
tttgaggaagcagccaacagaacaggaagagccaataaacgttacattct
attggtgacttatcaggtgctgttcacacttactggaaaagggatctgga
gcaagaagccctctcttgactcagtttcaaagacatttatatcaagtgtc
ctccgagacctcctgtcccaagtcaggctgagccctggctcctgacaagg
agagggaaatgcagacagaaagtaaaccattcacaacagaggttgctatg
gttttccaatggcgtgaaatgcttgtagagagaacagtaaggcaaaaacc
aaagccatcaatggacagacccaatcagagctccgctggtctggccaccg
cttcctgagctggtttctgctgactgtctgttactactattacttgctat
ctgttcttttgcttgctccacaatcagtaaaacccacgaagacagttgtg
atcagagacctgaaagttgtaggagaaaagacaagtgtttcacccaataa
aataaacaagcagacatggctgcaggcacctgcgctgggctggcaagaag
agagcagaaactttatcccaaataatggcaagtagctctgtgcaaacata
ccgcagctattaactcagacatgccactacctcacagcatctatcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_109639425_109640512
seq2: B6Ng01-019D17.b_47_1122

seq1  GAATTCCTTCTTGCTTTATGAGGATCAGCACTCTGCTAGTCTTGGTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTTGCTTTATGAGGATCAGCACTCTGCTAGTCTTGGTGGTG  50

seq1  GCAGAGACGCCCCATAAAACCTACCTCCTGGTTTCCAGGGGTTGAGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACGCCCCATAAAACCTACCTCCTGGTTTCCAGGGGTTGAGATTC  100

seq1  TTTGTTCTGATCACTCTTCCATCCTCTGGTGATACCTACACACTTCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTGATCACTCTTCCATCCTCTGGTGATACCTACACACTTCACTT  150

seq1  GTTCCACTGAGAACAGTAGTAACTTGATTTCTGGGTTGTCTAGAACTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACTGAGAACAGTAGTAACTTGATTTCTGGGTTGTCTAGAACTTCA  200

seq1  GGATCCTGTGTTTATGAGACCAGAATGAAGACTCTTCCATGTGGGTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTGTGTTTATGAGACCAGAATGAAGACTCTTCCATGTGGGTAAAA  250

seq1  ATCTACTGCACCTTAATGGATTTTATTTTAACCCAGATGCAGGTGGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTGCACCTTAATGGATTTTATTTTAACCCAGATGCAGGTGGCCTC  300

seq1  CTGCATCTATCTCCTATCTATCTATCTATCTATCTATCTATCTATCTATC  350
      |||||||||||||    |||||||||||||||||||||||||||||||||
seq2  CTGCATCTATCTC----CTATCTATCTATCTATCTATCTATCTATCTATC  346

seq1  TATCTATCTATCTATCTATGTATCTATCTATCTATCTATCATTTATCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATGTATCTATCTATCTATCTATCATTTATCTAT  396

seq1  GTATCCACCATCTATCTATGTTTCTC----TCTTTCTTTCTTTCTTTCTT  446
      ||||||||||||||||||||||||||    ||||||||||||||||||||
seq2  GTATCCACCATCTATCTATGTTTCTCTCTTTCTTTCTTTCTTTCTTTCTT  446

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCC  496

seq1  TTCCTTCCTTCCTTCCTCCCTCCCTCCCTTCCTCTCTCTCTCTCTCTTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCCTTCCTCCCTCCCTCCCTTCCTCTCTCTCTCTCTCTTCC  546

seq1  TTCCTTCCTCTTTCATTCCCTCCTTCTTTTCTTTTTTTCATTCTTTTCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTCTTTCATTCCCTCCTTCTTTTCTTTTTTTCATTCTTTTCTT  596

seq1  TTTTCCTATGTGAACACACATAGGGCATTTTCCTAAACTTTCTGTCATTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTATGTGAACACACATAGGGCATTTTCCTAAACTTTCTGTCATTG  646

seq1  TTAAACTCTACTGCTATAGTTACATCAAGAGTGGGCAGGTGTATCTGGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTCTACTGCTATAGTTACATCAAGAGTGGGCAGGTGTATCTGGAG  696

seq1  AGAAAGACCATCAGGAGACTTGTGCCATAGACAACAGAAGAGAGCCAAAC  746
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACCATCACGAGACTTGTGCCATAGACAACAGAAGAGAGCCAAAC  746

seq1  ATCACAGCTCCCAAGAGAGTGTGGGAAGTTCAGGGCAAGTAGGAGCAAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGCTCCCAAGAGAGTGTGGGAAGTTCAGGGCAAGTAGGAGCAAGG  796

seq1  CCAGGTTGGGCTGCTGCACTTCATGGCAGACTGGTCAAATTATATCTCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTGGGCTGCTGCACTTCATGGCAGACTGGTCAAATTATATCTCTT  846

seq1  GCCCAGAGTTTCTCATTAAGGGTCTGTGCCTTGGAGACATTTTGGCCTAC  896
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  GCCCAGAG-TTCTCATTAA-GGTCTGTGCCTTGGAGACATTTTGGCCTAC  894

seq1  CAAGGTGCATCATTAAGGCAGCCTGGGCATAATAACAGTGATTCAGATGA  946
      ||| |||||||||||| |||||||||||||||||||||||||||||||| 
seq2  CAA-GTGCATCATTAA-GCAGCCTGGGCATAATAACAGTGATTCAGATG-  941

seq1  ATTTAAAAGAGAAGTCTAAATTAGAGCACACATTCATGTTT-CTCTTGAA  995
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  ATTTAAAAGAGAAGTCT-AATTAGAGCACACATTCATGTTTCCTCTTGAA  990

seq1  GTCTATCGGGTAAAGGAAGTTCACTGAAGGAATCATTAGCAAAATAACCA  1045
      ||||||| ||| ||||||| |||||||||  ||||||||||||   ||||
seq2  GTCTATCCGGT-AAGGAAG-TCACTGAAG--ATCATTAGCAAA--TACCA  1034

seq1  GGTGAGGTGATGGTTGCCAGTCGT-CATGAGCAAAAGTTAAGAA  1088
      |  |||||||||| ||| |||||| ||||||| |||||||||||
seq2  GTGGAGGTGATGG-TGCAAGTCGTCCATGAGC-AAAGTTAAGAA  1076

seq1: chr11_109745118_109746221
seq2: B6Ng01-019D17.g_70_1166 (reverse)

seq1  TGGATTTGATGCTGGTGAGGTAGTGGGCATGTCCTGAGTATATAGCTGCT  50
      |||| | |||||| |||||||||| ||||||| ||||||  |||||||| 
seq2  TGGA-TAGATGCT-GTGAGGTAGT-GGCATGT-CTGAGTTAATAGCTGC-  45

seq1  GGTATTGTTTTGCCAGAGCTACTTGGC-TTATATTGGGATAAGGTTTCTG  99
      |||| |||||   |||||||||||| | |||| ||||||||| |||||||
seq2  GGTA-TGTTTGCACAGAGCTACTTGCCATTAT-TTGGGATAAAGTTTCTG  93

seq1  CTTCTCTTCTTGCCAACCCAGCGCAGGTGCCTGCAGCCATGTTCTGCTTG  149
      | ||||||||||||| ||||||||||||||||||||||||| ||||||| 
seq2  C-TCTCTTCTTGCCAGCCCAGCGCAGGTGCCTGCAGCCATG-TCTGCTT-  140

seq1  GTTTATTTTATTGGGTGAAACACTTGTCTTTTCTCCTACACTTTTCAGGT  199
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  GTTTATTTTATTGGGTGAAACACTTGTCTTTTCTCCTACAACTTTCAGGT  190

seq1  CTCTGATCAC-ACTGTCTTCGTGGGTTTTACTGATTGTGGAGCAAGCAAA  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATCACAACTGTCTTCGTGGGTTTTACTGATTGTGGAGCAAGCAAA  240

seq1  AGAACAGATAGCAAGTAATAGTAGTAACAGACAGTCAGCAGAAACCAGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGATAGCAAGTAATAGTAGTAACAGACAGTCAGCAGAAACCAGCT  290

seq1  CAGGAAGCGGTGGCCAGACCAGCGGAGCTCTGATTGGGTCTGTCCATTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCGGTGGCCAGACCAGCGGAGCTCTGATTGGGTCTGTCCATTGA  340

seq1  TGGCTTTGGTTTTTGCCTTACTGTTCTCTCTACAAGCATTTCACGCCATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTGGTTTTTGCCTTACTGTTCTCTCTACAAGCATTTCACGCCATT  390

seq1  GG-AAACCATAGCAACCTCTGTTGTGAATGGTTTACTTTCTGTCTGCATT  447
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCATAGCAACCTCTGTTGTGAATGGTTTACTTTCTGTCTGCATT  440

seq1  TCCCTCTCCTTGTCAGGAGCCAGGGCTCAGCCTGACTTGGGACAGGAGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCCTTGTCAGGAGCCAGGGCTCAGCCTGACTTGGGACAGGAGGT  490

seq1  CTCGGAGGACACTTGATATAAATGTCTTTGAAACTGAGTCAAGAGAGGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGAGGACACTTGATATAAATGTCTTTGAAACTGAGTCAAGAGAGGGC  540

seq1  TTCTTGCTCCAGATCCCTTTTCCAGTAAGTGTGAACAGCACCTGATAAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTCCAGATCCCTTTTCCAGTAAGTGTGAACAGCACCTGATAAGT  590

seq1  CACCAATAGAATGTAACGTTTATTGGCTCTTCCTGTTCTGTTGGCTGCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATAGAATGTAACGTTTATTGGCTCTTCCTGTTCTGTTGGCTGCTT  640

seq1  CCTCAAACTTGCTAGAGAGCTGAGAGTGAACTTGAACTTACAATTCTCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACTTGCTAGAGAGCTGAGAGTGAACTTGAACTTACAATTCTCTC  690

seq1  ACTTCTGGGTTTTATTCTTGCTCATGCTTGTGGTTACTAAGAAAGCATTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGGGTTTTATTCTTGCTCATGCTTGTGGTTACTAAGAAAGCATTG  740

seq1  TTTAATCCAAAATCCAAAGGCTCACAACTATGTTCTCTGTTAAGGGTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCAAAATCCAAAGGCTCACAACTATGTTCTCTGTTAAGGGTTTT  790

seq1  AATCACTTCAACTGTCCAGTTTAAGTTTTTGAACTCTTGAGCTCACTTCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTCAACTGTCCAGTTTAAGTTTTTGAACTCTTGAGCTCACTTCC  840

seq1  GTATATCAAGTAAGGTCGAGGATCCAGCTTCATTATTTCGTCAATGGAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCAAGTAAGGTCGAGGATCCAGCTTCATTATTTCGTCAATGGAAG  890

seq1  GCTCTCTTGACTGGTACTGTTTTTGTGCAGGGCAAAGGTCTAGACACGTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTGACTGGTACTGTTTTTGTGCAGGGCAAAGGTCTAGACACGTC  940

seq1  TTGAAGATTTTGCATTTTCCAAATCAGGAAGCTGTTGTCTGATGTCCAGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATTTTGCATTTTCCAAATCAGGAAGCTGTTGTCTGATGTCCAGT  990

seq1  GTCAAGCATGTGTTGCTAGAGCCATGAGTTAGACAGTAGTTGTTCTAGCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCATGTGTTGCTAGAGCCATGAGTTAGACAGTAGTTGTTCTAGCA  1040

seq1  CCAACTCTTCTTCTAGAGACTCGTAAGTTATCAGGACAGCTTTCCTCTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCTTCTTCTAGAGACTCGTAAGTTATCAGGACAGCTTTCCTCTAT  1090

seq1  GGAATTC  1104
      |||||||
seq2  GGAATTC  1097