BAC Information

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BAC

Clone NameB6Ng01-019F22
Chromosome11 (Build37)
Map Location 25,867,936 - 25,964,139
singlet/doubletdoublet
Overlap gene5730522E02Rik, LOC100042328
Upstream genenone
Downstream geneLOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019F22.bB6Ng01-019F22.g
ACCDH852477DH852478
length1,135979
definitionDH852477|Mus musculus domesticus DNA, BAC clone: B6Ng01-019F22, 5' end.DH852478|Mus musculus domesticus DNA, BAC clone: B6Ng01-019F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,962,992 - 25,964,139)(25,867,936 - 25,868,921)
sequence
gaattcagacacaggccaggttgtggtcaaatcagagttattaaacaaga
ttatataaacctgcttagaaaatggacttcagagctctacagaagtgtag
agatctcagatcttttacccacatttaagtgatttctgttgctttttctt
ttgggacagggtctccctttgcagctcaggctagcttgggactcaagacc
ctccctctgtcttctgagtgctgagattgctaagagtgtgccagcatacc
agctaaatatctgtatttaaaggggagttaagagaactgaggaaaagcag
cattagtgagttagggcaatggcctttgtgttctcttctctctcccctct
ttgcccccagcccctctacctctccccttctagctccttcacttcacttt
cccatattctttagcaccgctgacaaaggaaatcagaagaaaatggaaat
aatagaaaagattacttttttttcttacccatggactccaaataaaaggg
acatagcattaactcctaaaatgatttgctctttgcttccatctgcatat
ctgatctaattatactattaaaaggcgaaggcaaagggagacattagact
aacaagtgaagttcttaacttgcaccagaaacacgatttgctccatgctc
agcctccttttaacagctctttgcagcccttgatgcacagcagggggagt
ggcattggccaccccaaggcaaaatggatcagtgtgcctctgtatggaaa
attggtccatgtgtgatttagctttgagttgtgttgtgtttcttatacta
atataatattgttctagtgcttgcccctgattaaagaaataacataaata
aataatttataatttaattaataaaggtataatatgcaaagcacagtaat
ttcaaacagcttgtaatgtctctaatgtactttcaattttttattttaca
taaggctatattcattatgtagttatgataaacatactaatgaattttat
tacagggacaatttaacatgtaaatgaagatcaaatagtattaaatgcaa
cgatgttgaaacttatacaaactaccttgccaaatacatgaatattgtat
tttaaacttttgtgagtgatctctaacaaggcatt
gaattctttcccaccttcaaagaacaccaaataccaacactctttaaact
attccaccaaagagaaacaaaaggaacgctacccaaccaattcattctat
gaagtcacagttacactgagtattctcccttggagatggaatgttttctg
tctaatcaggaacttgtcacaatttcctttcgtagaggacttcattagag
atttttttcaacttctatcatgtttaatgttccaaattgattttaaaaac
tggttgagtgcatattacttatagcttcagaggacagcatgtatatttaa
caggcatttaactattataaattattgtgataactttaaaaaatcaatac
tgagttgtatattttaaaataaattttattagtttaataaaaaataaaat
aaagaatagctgatctctatgcttatttcaaaaaaagaaaaagaaaaaga
aaaattacaagcccttcaaatttaaataaaaattataattttatcatttt
tgggacctagtataatttttcttgaatttattcactggtgaatcaagttg
taatacatcaatttagaagtcagcatggcaataagaaataaggttgtata
ttagtattaatattagtggaattgtattagattttttcagttccaaaatg
ctaaaaaaatattaaaagttaatacaagaaaacattataaccaaagtata
ctatgtaaatatatggacacatgaaaataaattcactgttttattgtaga
tttgaatgagaatgagtccataggctcatatatttgaatacttaatccct
aggcagtggaatggtttgggaagtatctggaggtgtaaccttgttgggag
aaggtgtgtctgtcactgggggcaaacttgagctttcaaagtccctgcca
ttcccatgtagcttctctcttcatctttgtgctgggatcaagggtgagct
ctagactgatccaatgctatgcctggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25962992_25964139
seq2: B6Ng01-019F22.b_46_1180 (reverse)

seq1  AATGCCTTTGTTTAAGAGATACAACTCACAAAGTTTTAAAATAACATCAT  50
      |||||| |||||  ||||||   |||||||||  |||||||| |||  ||
seq2  AATGCC-TTGTT--AGAGAT--CACTCACAAAAGTTTAAAAT-ACAATAT  44

seq1  TCCATGTATATTGGCAAGGTTAGTTTGTAATAAGTTTCACCATCGTTTGC  100
      | ||||||| ||||||||| |||||||| |||||||||| ||||| ||||
seq2  T-CATGTAT-TTGGCAAGG-TAGTTTGT-ATAAGTTTCAACATCG-TTGC  89

seq1  ATTTTAATACTATTTGATC-TCATTTACATGTTTAAATTTGTTCCTGTAA  149
      | ||||||||||||||||| |||||||||||||  || |||| |||||||
seq2  A-TTTAATACTATTTGATCTTCATTTACATGTT--AAATTGTCCCTGTAA  136

seq1  TAAAATTCATTAGTATGTTTATCATAACTACATAATGAATATAGCCCTTA  199
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAAAATTCATTAGTATGTTTATCATAACTACATAATGAATATAG-CCTTA  185

seq1  TGTAAAATAAAAAATTGAAAGTACATTAGAGACATTACAAGCTGTTTGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATAAAAAATTGAAAGTACATTAGAGACATTACAAGCTGTTTGAA  235

seq1  ATTACTGTGCTTTGCATATTATACC-TTATTAATTAAATTATAAATTATT  298
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTACTGTGCTTTGCATATTATACCTTTATTAATTAAATTATAAATTATT  285

seq1  TATTTATGTTATTTCTTTAATCAGGGGCAAGCACTAGAACAATATTATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGTTATTTCTTTAATCAGGGGCAAGCACTAGAACAATATTATAT  335

seq1  TAGTATAAGAAACACAACACAACTCAAAGCTAAATCACACATGGACCAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAAGAAACACAACACAACTCAAAGCTAAATCACACATGGACCAAT  385

seq1  TTTCCATACAGAGGCACACTGATCCATTTTGCCTTGGGGTGGCCAATGCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATACAGAGGCACACTGATCCATTTTGCCTTGGGGTGGCCAATGCC  435

seq1  ACTCCCCCTGCTGTGCATCAAGGGCTGCAAAGAGCTGTTAAAAGGAGGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCCTGCTGTGCATCAAGGGCTGCAAAGAGCTGTTAAAAGGAGGCT  485

seq1  GAGCATGGAGCAAATCGTGTTTCTGGTGCAAGTTAAGAACTTCACTTGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGGAGCAAATCGTGTTTCTGGTGCAAGTTAAGAACTTCACTTGTT  535

seq1  AGTCTAATGTCTCCCTTTGCCTTCGCCTTTTAATAGTATAATTAGATCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAATGTCTCCCTTTGCCTTCGCCTTTTAATAGTATAATTAGATCAG  585

seq1  ATATGCAGATGGAAGCAAAGAGCAAATCATTTTAGGAGTTAATGCTATGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAGATGGAAGCAAAGAGCAAATCATTTTAGGAGTTAATGCTATGT  635

seq1  CCCTTTTATTTGGAGTCCATGGGTAAGAAAAAAAAGTAATCTTTTCTATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTATTTGGAGTCCATGGGTAAGAAAAAAAAGTAATCTTTTCTATT  685

seq1  ATTTCCATTTTCTTCTGATTTCCTTTGTCAGCGGTGCTAAAGAATATGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATTTTCTTCTGATTTCCTTTGTCAGCGGTGCTAAAGAATATGGG  735

seq1  AAAGTGAAGTGAAGGAGCTAGAAGGGGAGAGGTAGAGGGGCTGGGGGCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAAGTGAAGGAGCTAGAAGGGGAGAGGTAGAGGGGCTGGGGGCAA  785

seq1  AGAGGGGAGAGAGAAGAGAACACAAAGGCCATTGCCCTAACTCACTAATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGAGAGAGAAGAGAACACAAAGGCCATTGCCCTAACTCACTAATG  835

seq1  CTGCTTTTCCTCAGTTCTCTTAACTCCCCTTTAAATACAGATATTTAGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTCCTCAGTTCTCTTAACTCCCCTTTAAATACAGATATTTAGCT  885

seq1  GGTATGCTGGCACACTCTTAGCAATCTCAGCACTCAGAAGACAGAGGGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGCTGGCACACTCTTAGCAATCTCAGCACTCAGAAGACAGAGGGAG  935

seq1  GGTCTTGAGTCCCAAGCTAGCCTGAGCTGCAAAGGGAGACCCTGTCCCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGAGTCCCAAGCTAGCCTGAGCTGCAAAGGGAGACCCTGTCCCAA  985

seq1  AAGAAAAAGCAACAGAAATCACTTAAATGTGGGTAAAAGATCTGAGATCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGCAACAGAAATCACTTAAATGTGGGTAAAAGATCTGAGATCT  1035

seq1  CTACACTTCTGTAGAGCTCTGAAGTCCATTTTCTAAGCAGGTTTATATAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTTCTGTAGAGCTCTGAAGTCCATTTTCTAAGCAGGTTTATATAA  1085

seq1  TCTTGTTTAATAACTCTGATTTGACCACAACCTGGCCTGTGTCTGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTAATAACTCTGATTTGACCACAACCTGGCCTGTGTCTGAATTC  1135

seq1: chr11_25867936_25868921
seq2: B6Ng01-019F22.g_66_1044

seq1  GAATTCTTTCCCACCTTCAAAGAACACCAAATACCAACACTCTTTAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCACCTTCAAAGAACACCAAATACCAACACTCTTTAAACT  50

seq1  ATTCCACCAAAGAGAAACAAAAGGAACGCTACCCAACCAATTCATTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACCAAAGAGAAACAAAAGGAACGCTACCCAACCAATTCATTCTAT  100

seq1  GAAGTCACAGTTACACTGAGTATTCTCCCTTGGAGATGGAATGTTTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCACAGTTACACTGAGTATTCTCCCTTGGAGATGGAATGTTTTCTG  150

seq1  TCTAATCAGGAACTTGTCACAATTTCCTTTCGTAGAGGACTTCATTAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCAGGAACTTGTCACAATTTCCTTTCGTAGAGGACTTCATTAGAG  200

seq1  ATTTTTTTCAACTTCTATCATGTTTAATGTTCCAAATTGATTTTAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCAACTTCTATCATGTTTAATGTTCCAAATTGATTTTAAAAAC  250

seq1  TGGTTGAGTGCATATTACTTATAGCTTCAGAGGACAGCATGTATATTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAGTGCATATTACTTATAGCTTCAGAGGACAGCATGTATATTTAA  300

seq1  CAGGCATTTAACTATTATAAATTATTGTGATAACTTTAAAAAATCAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATTTAACTATTATAAATTATTGTGATAACTTTAAAAAATCAATAC  350

seq1  TGAGTTGTATATTTTAAAATAAATTTTATTAGTTTAATAAAAAATAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGTATATTTTAAAATAAATTTTATTAGTTTAATAAAAAATAAAAT  400

seq1  AAAGAATAGCTGATCTCTATGCTTATTTCAAAAAAAGAAAAAGAAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAGCTGATCTCTATGCTTATTTCAAAAAAAGAAAAAGAAAAAGA  450

seq1  AAAATTACAAGCCCTTCAAATTTAAATAAAAATTATAATTTTATCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACAAGCCCTTCAAATTTAAATAAAAATTATAATTTTATCATTTT  500

seq1  TGGGACCTAGTATAATTTTTCTTGAATTTATTCACTGGTGAATCAAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCTAGTATAATTTTTCTTGAATTTATTCACTGGTGAATCAAGTTG  550

seq1  TAATACATCAATTTAGAAGTCAGCATGGCAATAAGAAATAAGGTTGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACATCAATTTAGAAGTCAGCATGGCAATAAGAAATAAGGTTGTATA  600

seq1  TTAGTATTAATATTAGTGGAATTGTATTAGATTTTTTCAGTTCCAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATTAATATTAGTGGAATTGTATTAGATTTTTTCAGTTCCAAAATG  650

seq1  CTAAAAAAATATTAAAAGTTAATACAAGAAAACATTATAACCAAAGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAAATATTAAAAGTTAATACAAGAAAACATTATAACCAAAGTATA  700

seq1  CTATGTAAATATATGGACACATGAAAATAAATTCACTGTTTTATTGTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAAATATATGGACACATGAAAATAAATTCACTGTTTTATTGTAGA  750

seq1  TTTGAATGAGAATGAGTCCATAGGCTCATATATTTGAATACTTAATCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGAGAATGAGTCCATAGGCTCATATATTTGAATACTTAATCCCT  800

seq1  AGGCAGTGGAATGGTTTGGGAAGTATCTGGAGGTGTAACCTTGTT-GGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGCAGTGGAATGGTTTGGGAAGTATCTGGAGGTGTAACCTTGTTGGGAG  850

seq1  AAGGTGTGTCTGTCACTGGGGGCAAGACTTGAGCTTTCAAAAGTCCCTGC  899
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  AAGGTGTGTCTGTCACTGGGGGCAA-ACTTGAGCTTTC-AAAGTCCCTGC  898

seq1  CATTCCCATGTAGCTTTCTCTCTTTCATCTTTGTGCTTGTGAATCAGGGG  949
      |||||||||||||| ||||||| ||||||||||||||   | |||| |||
seq2  CATTCCCATGTAGC-TTCTCTC-TTCATCTTTGTGCT--GGGATCAAGGG  944

seq1  TGAGCTCTTAGTACTGATCCAATGCTATGCCTGCCTG  986
      ||||||| ||| ||||||||||||||||||||| |||
seq2  TGAGCTC-TAG-ACTGATCCAATGCTATGCCTGGCTG  979