BAC Information

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BAC

Clone NameB6Ng01-019H05
Chromosome11 (Build37)
Map Location 64,589,160 - 64,729,686
singlet/doubletdoublet
Overlap geneLOC626959
Upstream geneLOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik, EG544785, Hs3st3a1
Downstream geneElac2, AU040829, 1700086D15Rik, LOC100041790, Myocd, Map2k4, Zkscan6, Dnahc9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019H05.bB6Ng01-019H05.g
ACCDH852532DH852533
length718129
definitionDH852532|Mus musculus domesticus DNA, BAC clone: B6Ng01-019H05, 5' end.DH852533|Mus musculus domesticus DNA, BAC clone: B6Ng01-019H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,728,970 - 64,729,686)(64,589,160 - 64,589,288)
sequence
gaattcagctcctttgcatcttaccttataagatgggtattatagggatc
accaggtggtggctgaggaaattcaggcacctgagttttgagtctcctat
ccaaggtcacttatctagtttaaggcagagctgagcttcacaaagccagc
tagtgctggtacccacccttgcagtgcatcagacctagttgattggctca
cactcagacactgtggggcggagacttgggagcacatcctcagtccttgt
gtgtggctttttcactcattcatgtgggatctgatatctcaatttttttc
aacagatttttttccagtatattaaagtttattttaatatatgatgctta
atatataaaaggtaccttcctctcacttatttctagcttttatgactata
taacatgagaaagatatagaaatatagagtgagttttgtctctcacagag
gcctacataaagatccaaatccctcaaaaaccagtaaagcacatatatgt
ttatattacattggagatgaatagcagccatagaggaccatgattcgaca
gagggtgtgatataggaataaactggggactttttgaagcctgctgcttc
aggttcttccagagggaagcatgttctttgcctttgggtataaggaggac
accctgggaatgagggtcttcttaaatgtgcttcagatgaaaggagtggg
gggagatgagtggggacc
tttgttgcttgggatggaggtaaatttaggtcaggtgctactctaaaaag
aaaaaaaaacctgataaaacgtttgtcacaaattctctctctctctctct
ctctctctctctctgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_64728970_64729686
seq2: B6Ng01-019H05.b_46_763 (reverse)

seq1  GGTCCCC-CTCATCTCCCCCCACTCCTTTCATCTGAAGCACATTTAAGAA  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCACTCATCTCCCCCCACTCCTTTCATCTGAAGCACATTTAAGAA  50

seq1  GACCCTCATTCCCAGGGTGTCCTCCTTATACCCAAAGGCAAAGAACATGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCATTCCCAGGGTGTCCTCCTTATACCCAAAGGCAAAGAACATGC  100

seq1  TTCCCTCTGGAAGAACCTGAAGCAGCAGGCTTCAAAAAGTCCCCAGTTTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTGGAAGAACCTGAAGCAGCAGGCTTCAAAAAGTCCCCAGTTTA  150

seq1  TTCCTATATCACACCCTCTGTCGAATCATGGTCCTCTATGGCTGCTATTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATATCACACCCTCTGTCGAATCATGGTCCTCTATGGCTGCTATTC  200

seq1  ATCTCCAATGTAATATAAACATATATGTGCTTTACTGGTTTTTGAGGGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAATGTAATATAAACATATATGTGCTTTACTGGTTTTTGAGGGAT  250

seq1  TTGGATCTTTATGTAGGCCTCTGTGAGAGACAAAACTCACTCTATATTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCTTTATGTAGGCCTCTGTGAGAGACAAAACTCACTCTATATTTC  300

seq1  TATATCTTTCTCATGTTATATAGTCATAAAAGCTAGAAATAAGTGAGAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTTCTCATGTTATATAGTCATAAAAGCTAGAAATAAGTGAGAGG  350

seq1  AAGGTACCTTTTATATATTAAGCATCATATATTAAAATAAACTTTAATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACCTTTTATATATTAAGCATCATATATTAAAATAAACTTTAATAT  400

seq1  ACTGGAAAAAAATCTGTTGAAAAAAATTGAGATATCAGATCCCACATGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAAAAAATCTGTTGAAAAAAATTGAGATATCAGATCCCACATGAA  450

seq1  TGAGTGAAAAAGCCACACACAAGGACTGAGGATGTGCTCCCAAGTCTCCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAAAAAGCCACACACAAGGACTGAGGATGTGCTCCCAAGTCTCCG  500

seq1  CCCCACAGTGTCTGAGTGTGAGCCAATCAACTAGGTCTGATGCACTGCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGTGTCTGAGTGTGAGCCAATCAACTAGGTCTGATGCACTGCAA  550

seq1  GGGTGGGTACCAGCACTAGCTGGCTTTGTGAAGCTCAGCTCTGCCTTAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGTACCAGCACTAGCTGGCTTTGTGAAGCTCAGCTCTGCCTTAAA  600

seq1  CTAGATAAGTGACCTTGGATAGGAGACTCAAAACTCAGGTGCCTGAATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAAGTGACCTTGGATAGGAGACTCAAAACTCAGGTGCCTGAATTT  650

seq1  CCTCAGCCACCACCTGGTGATCCCTATAATACCCATCTTATAAGGTAAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCACCACCTGGTGATCCCTATAATACCCATCTTATAAGGTAAGA  700

seq1  TGCAAAGGAGCTGAATTC  717
      ||||||||||||||||||
seq2  TGCAAAGGAGCTGAATTC  718

seq1: chr11_64589160_64589288
seq2: B6Ng01-019H05.g_76_204

seq1  TTTGTTGCTTGGGATGGAGGTAAATTTAGGTCAGGTGCTACTCTAAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCTTGGGATGGAGGTAAATTTAGGTCAGGTGCTACTCTAAAAAG  50

seq1  AAAAAAAAACCTGATAAAACGTTTGTCACAAATTCTCTCTCTCTCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACCTGATAAAACGTTTGTCACAAATTCTCTCTCTCTCTCTCT  100

seq1  CTCTCTCTCTCTCTGTGTGTGTGTGTGTG  129
      |||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTGTGTGTGTGTGTGTG  129